RNA–Protein interactions for RNA: ENST00000546744.5

PTCH1-212, Transcript of patched 1, humanhuman

TSL 2

Gene PTCH1, Length 4,389 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCH1-212ENST00000546744 NEK10Q6ZWH5 1172 aa13.2□□□□□ -0.3
PTCH1-212ENST00000546744 DHX30Q7L2E3 1194 aaKnown RBP eCLIP13.2□□□□□ -0.3
PTCH1-212ENST00000546744 ZNF34Q8IZ26 560 aa13.2□□□□□ -0.3
PTCH1-212ENST00000546744 AADATQ8N5Z0 425 aa13.2□□□□□ -0.3
PTCH1-212ENST00000546744 SHCBP1Q8NEM2 672 aa13.2□□□□□ -0.3
PTCH1-212ENST00000546744 ETNPPLQ8TBG4 499 aa13.2□□□□□ -0.3
PTCH1-212ENST00000546744 PHF21AQ96BD5 680 aa13.2□□□□□ -0.3
PTCH1-212ENST00000546744 DCUN1D5Q9BTE7 237 aa13.2□□□□□ -0.3
PTCH1-212ENST00000546744 FAM53CQ9NYF3 392 aa13.2□□□□□ -0.3
PTCH1-212ENST00000546744 RGS5O15539 181 aa13.2□□□□□ -0.3
PTCH1-212ENST00000546744 VPS4BO75351 444 aa13.2□□□□□ -0.3
PTCH1-212ENST00000546744 IL18RAPO95256 599 aa13.2□□□□□ -0.3
PTCH1-212ENST00000546744 CYP11B1P15538 503 aa13.2□□□□□ -0.3
PTCH1-212ENST00000546744 POLR2EP19388 210 aaKnown RBP13.2□□□□□ -0.3
PTCH1-212ENST00000546744 TPI1P60174 286 aa13.2□□□□□ -0.3
PTCH1-212ENST00000546744 NAA20P61599 178 aa13.2□□□□□ -0.3
PTCH1-212ENST00000546744 KCNA1Q09470 495 aa13.2□□□□□ -0.3
PTCH1-212ENST00000546744 NCF4Q15080 339 aa13.2□□□□□ -0.3
PTCH1-212ENST00000546744 RBBP7Q16576 425 aa13.2□□□□□ -0.3
PTCH1-212ENST00000546744 CCDC81Q6ZN84 652 aa13.2□□□□□ -0.3
PTCH1-212ENST00000546744 UNC45BQ8IWX7 931 aa13.2□□□□□ -0.3
PTCH1-212ENST00000546744 LEMD2Q8NC56 503 aa13.2□□□□□ -0.3
PTCH1-212ENST00000546744 C19orf18Q8NEA5 215 aa13.2□□□□□ -0.3
PTCH1-212ENST00000546744 CDC26Q8NHZ8 85 aa13.2□□□□□ -0.3
PTCH1-212ENST00000546744 RNF217Q8TC41 542 aa13.2□□□□□ -0.3
PTCH1-212ENST00000546744 COX4I2Q96KJ9 171 aa13.2□□□□□ -0.3
PTCH1-212ENST00000546744 SRPK1Q96SB4 655 aaKnown RBP13.2□□□□□ -0.3
PTCH1-212ENST00000546744 EGFL8Q99944 293 aa13.2□□□□□ -0.3
PTCH1-212ENST00000546744 DUSP9Q99956 384 aaKnown RBP13.2□□□□□ -0.3
PTCH1-212ENST00000546744 LRRC19Q9H756 370 aa13.2□□□□□ -0.3
PTCH1-212ENST00000546744 IGSF9BQ9UPX0 1349 aa13.19□□□□□ -0.3
PTCH1-212ENST00000546744 KLHL33A6NCF5 533 aa13.19□□□□□ -0.3
PTCH1-212ENST00000546744 H7C0S8 307 aa13.19□□□□□ -0.3
PTCH1-212ENST00000546744 HLA-DRAP01903 254 aa13.19□□□□□ -0.3
PTCH1-212ENST00000546744 SERPINB5P36952 375 aa13.19□□□□□ -0.3
PTCH1-212ENST00000546744 MSLNQ13421 630 aaPredicted RBP13.19□□□□□ -0.3
PTCH1-212ENST00000546744 DPYSQ14117 519 aa13.19□□□□□ -0.3
PTCH1-212ENST00000546744 SLC10A5Q5PT55 438 aa13.19□□□□□ -0.3
PTCH1-212ENST00000546744 FAM45BPQ6NSW5 357 aa13.19□□□□□ -0.3
PTCH1-212ENST00000546744 ABRAXAS1Q6UWZ7 409 aa13.19□□□□□ -0.3
PTCH1-212ENST00000546744 C4orf50Q6ZRC1 276 aa13.19□□□□□ -0.3
PTCH1-212ENST00000546744 TRIM74Q86UV6 250 aa13.19□□□□□ -0.3
PTCH1-212ENST00000546744 TRIM73Q86UV7 250 aa13.19□□□□□ -0.3
PTCH1-212ENST00000546744 TMEM139Q8IV31 216 aa13.19□□□□□ -0.3
PTCH1-212ENST00000546744 FAM71DQ8N9W8 422 aa13.19□□□□□ -0.3
PTCH1-212ENST00000546744 RAB26Q9ULW5 256 aa13.19□□□□□ -0.3
PTCH1-212ENST00000546744 ANKRD6Q9Y2G4 727 aa13.19□□□□□ -0.3
PTCH1-212ENST00000546744 CSADQ9Y600 493 aa13.19□□□□□ -0.3
PTCH1-212ENST00000546744 NCANO14594 1321 aa13.19□□□□□ -0.3
PTCH1-212ENST00000546744 RNF103O00237 685 aa13.19□□□□□ -0.3
PTCH1-212ENST00000546744 ZBTB39O15060 712 aa13.19□□□□□ -0.3
PTCH1-212ENST00000546744 BIRC5O15392 142 aa13.19□□□□□ -0.3
PTCH1-212ENST00000546744 MAFGO15525 162 aa13.19□□□□□ -0.3
PTCH1-212ENST00000546744 NMT2O60551 498 aa13.19□□□□□ -0.3
PTCH1-212ENST00000546744 TLR2O60603 784 aa13.19□□□□□ -0.3
PTCH1-212ENST00000546744 FKBP9O95302 570 aa13.19□□□□□ -0.3
PTCH1-212ENST00000546744 SERPINA6P08185 405 aa13.19□□□□□ -0.3
PTCH1-212ENST00000546744 GP5P40197 560 aa13.19□□□□□ -0.3
PTCH1-212ENST00000546744 SLC1A6P48664 564 aa13.19□□□□□ -0.3
PTCH1-212ENST00000546744 TRAF3Q13114 568 aa13.19□□□□□ -0.3
PTCH1-212ENST00000546744 XKR3Q5GH77 459 aa13.19□□□□□ -0.3
PTCH1-212ENST00000546744 SPOCD1Q6ZMY3 1216 aa13.19□□□□□ -0.3
PTCH1-212ENST00000546744 FKBP9P1Q75LS8 142 aa13.19□□□□□ -0.3
PTCH1-212ENST00000546744 SPICE1Q8N0Z3 855 aa13.19□□□□□ -0.3
PTCH1-212ENST00000546744 FBXW8Q8N3Y1 598 aa13.19□□□□□ -0.3
PTCH1-212ENST00000546744 MINDY2Q8NBR6 621 aa13.19□□□□□ -0.3
PTCH1-212ENST00000546744 FAM13CQ8NE31 585 aa13.19□□□□□ -0.3
PTCH1-212ENST00000546744 NSMCE2Q96MF7 247 aa13.19□□□□□ -0.3
PTCH1-212ENST00000546744 UGT2B28Q9BY64 529 aa13.19□□□□□ -0.3
PTCH1-212ENST00000546744 PRRG3Q9BZD7 231 aa13.19□□□□□ -0.3
PTCH1-212ENST00000546744 RPAP3Q9H6T3 665 aaPredicted RBP13.19□□□□□ -0.3
PTCH1-212ENST00000546744 CLK4Q9HAZ1 481 aaKnown RBP13.19□□□□□ -0.3
PTCH1-212ENST00000546744 INTS13Q9NVM9 706 aa13.19□□□□□ -0.3
PTCH1-212ENST00000546744 OPLAHO14841 1288 aa13.19□□□□□ -0.3
PTCH1-212ENST00000546744 UBDO15205 165 aa13.19□□□□□ -0.3
PTCH1-212ENST00000546744 CD3EAPO15446 510 aaKnown RBP13.19□□□□□ -0.3
PTCH1-212ENST00000546744 EXTL3O43909 919 aa13.19□□□□□ -0.3
PTCH1-212ENST00000546744 ENTPD5O75356 428 aa13.19□□□□□ -0.3
PTCH1-212ENST00000546744 AKR1B1P15121 316 aa13.19□□□□□ -0.3
PTCH1-212ENST00000546744 EIF2AK2P19525 551 aaKnown RBP13.19□□□□□ -0.3
PTCH1-212ENST00000546744 SCNN1DP51172 638 aa13.19□□□□□ -0.3
PTCH1-212ENST00000546744 CCNA1P78396 465 aa13.19□□□□□ -0.3
PTCH1-212ENST00000546744 CBX3Q13185 183 aa13.19□□□□□ -0.3
PTCH1-212ENST00000546744 ACAP1Q15027 740 aa13.19□□□□□ -0.3
PTCH1-212ENST00000546744 ARMCX6Q7L4S7 300 aa13.19□□□□□ -0.3
PTCH1-212ENST00000546744 ELMO2Q96JJ3 720 aa13.19□□□□□ -0.3
PTCH1-212ENST00000546744 GCNAQ96QF7 691 aa13.19□□□□□ -0.3
PTCH1-212ENST00000546744 RMDN3Q96TC7 470 aa13.19□□□□□ -0.3
PTCH1-212ENST00000546744 POLR3FQ9H1D9 316 aaPredicted RBP13.19□□□□□ -0.3
PTCH1-212ENST00000546744 NOL6Q9H6R4 1146 aaKnown RBP13.19□□□□□ -0.3
PTCH1-212ENST00000546744 MTMR4Q9NYA4 1195 aa13.19□□□□□ -0.3
PTCH1-212ENST00000546744 DRG1Q9Y295 367 aaKnown RBP13.19□□□□□ -0.3
PTCH1-212ENST00000546744 INPP5FQ9Y2H2 1132 aa13.19□□□□□ -0.3
PTCH1-212ENST00000546744 NHSL1Q5SYE7 1610 aa13.18□□□□□ -0.3
PTCH1-212ENST00000546744 TGDSO95455 350 aa13.18□□□□□ -0.3
PTCH1-212ENST00000546744 CCNA2P20248 432 aa13.18□□□□□ -0.3
PTCH1-212ENST00000546744 PRDX5P30044 214 aa13.18□□□□□ -0.3
PTCH1-212ENST00000546744 YWHABP31946 246 aaKnown RBP13.18□□□□□ -0.3
PTCH1-212ENST00000546744 CA8P35219 290 aa13.18□□□□□ -0.3
PTCH1-212ENST00000546744 TALDO1P37837 337 aa13.18□□□□□ -0.3
Retrieved 100 of 20,778 RNA–protein pairs in 46.5 ms