RNA–Protein interactions for RNA: ENST00000545608.5

USP28-215, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 5

Gene USP28, Length 733 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-215ENST00000545608 DMAP1Q9NPF5 467 aaPredicted RBP8.97□□□□□ -0.97
USP28-215ENST00000545608 ZDHHC4Q9NPG8 344 aa8.97□□□□□ -0.97
USP28-215ENST00000545608 VPS45Q9NRW7 570 aa8.97□□□□□ -0.97
USP28-215ENST00000545608 EXOC1Q9NV70 894 aa8.97□□□□□ -0.97
USP28-215ENST00000545608 GMIPQ9P107 970 aa8.97□□□□□ -0.97
USP28-215ENST00000545608 HMGXB4Q9UGU5 601 aa8.97□□□□□ -0.97
USP28-215ENST00000545608 CFAP45Q9UL16 551 aa8.97□□□□□ -0.97
USP28-215ENST00000545608 GREB1Q4ZG55 1949 aa8.97□□□□□ -0.97
USP28-215ENST00000545608 DMXL1Q9Y485 3027 aa8.97□□□□□ -0.97
USP28-215ENST00000545608 WDR87Q6ZQQ6 2873 aa8.96□□□□□ -0.97
USP28-215ENST00000545608 FAM92AA1XBS5 289 aa8.96□□□□□ -0.98
USP28-215ENST00000545608 SGK1O00141 431 aa8.96□□□□□ -0.98
USP28-215ENST00000545608 PDXKO00764 312 aa8.96□□□□□ -0.98
USP28-215ENST00000545608 KAT7O95251 611 aa8.96□□□□□ -0.98
USP28-215ENST00000545608 KLF8O95600 359 aaPredicted RBP8.96□□□□□ -0.98
USP28-215ENST00000545608 ADH1CP00326 375 aa8.96□□□□□ -0.98
USP28-215ENST00000545608 NR3C1P04150 777 aa8.96□□□□□ -0.98
USP28-215ENST00000545608 RPN1P04843 607 aaKnown RBP8.96□□□□□ -0.98
USP28-215ENST00000545608 APODP05090 189 aa8.96□□□□□ -0.98
USP28-215ENST00000545608 ADH5P11766 374 aa8.96□□□□□ -0.98
USP28-215ENST00000545608 PFKFB1P16118 471 aa8.96□□□□□ -0.98
USP28-215ENST00000545608 CMA1P23946 247 aa8.96□□□□□ -0.98
USP28-215ENST00000545608 EIF2DP41214 584 aaKnown RBP8.96□□□□□ -0.98
USP28-215ENST00000545608 GRIA2P42262 883 aa8.96□□□□□ -0.98
USP28-215ENST00000545608 KIR2DL1P43626 348 aaPredicted RBP8.96□□□□□ -0.98
USP28-215ENST00000545608 MAP3K7CLP57077 242 aa8.96□□□□□ -0.98
USP28-215ENST00000545608 KDSRQ06136 332 aa8.96□□□□□ -0.98
USP28-215ENST00000545608 SGSM1Q2NKQ1 1148 aa8.96□□□□□ -0.98
USP28-215ENST00000545608 CEP135Q66GS9 1140 aa8.96□□□□□ -0.98
USP28-215ENST00000545608 PMS2CLQ68D20 193 aa8.96□□□□□ -0.98
USP28-215ENST00000545608 LYPD8Q6UX82 237 aa8.96□□□□□ -0.98
USP28-215ENST00000545608 TTC30AQ86WT1 665 aa8.96□□□□□ -0.98
USP28-215ENST00000545608 DDX42Q86XP3 938 aaKnown RBP eCLIP8.96□□□□□ -0.98
USP28-215ENST00000545608 BBS7Q8IWZ6 715 aa8.96□□□□□ -0.98
USP28-215ENST00000545608 PHTF2Q8N3S3 785 aa8.96□□□□□ -0.98
USP28-215ENST00000545608 NAT16Q8N8M0 369 aa8.96□□□□□ -0.98
USP28-215ENST00000545608 C12orf29Q8N999 325 aa8.96□□□□□ -0.98
USP28-215ENST00000545608 IL17RCQ8NAC3 791 aa8.96□□□□□ -0.98
USP28-215ENST00000545608 TXNDC5Q8NBS9 432 aaKnown RBP8.96□□□□□ -0.98
USP28-215ENST00000545608 SLC2A14Q8TDB8 520 aa8.96□□□□□ -0.98
USP28-215ENST00000545608 RLN3Q8WXF3 142 aa8.96□□□□□ -0.98
USP28-215ENST00000545608 DDX1Q92499 740 aaKnown RBP8.96□□□□□ -0.98
USP28-215ENST00000545608 SMARCD1Q96GM5 515 aa8.96□□□□□ -0.98
USP28-215ENST00000545608 LSM14BQ9BX40 385 aaKnown RBP8.96□□□□□ -0.98
USP28-215ENST00000545608 ALG2Q9H553 416 aa8.96□□□□□ -0.98
USP28-215ENST00000545608 UTP3Q9NQZ2 479 aaKnown RBP eCLIP8.96□□□□□ -0.98
USP28-215ENST00000545608 ARHGEF4Q9NR80 690 aa8.96□□□□□ -0.98
USP28-215ENST00000545608 KRT82Q9NSB4 513 aa8.96□□□□□ -0.98
USP28-215ENST00000545608 COMMD8Q9NX08 183 aa8.96□□□□□ -0.98
USP28-215ENST00000545608 TBC1D14Q9P2M4 693 aa8.96□□□□□ -0.98
USP28-215ENST00000545608 HPSEQ9Y251 543 aa8.96□□□□□ -0.98
USP28-215ENST00000545608 SH3BP1Q9Y3L3 701 aa8.96□□□□□ -0.98
USP28-215ENST00000545608 ATP8B3O60423 1300 aa8.96□□□□□ -0.98
USP28-215ENST00000545608 RALGAPA1Q6GYQ0 2036 aa8.95□□□□□ -0.98
USP28-215ENST00000545608 C4orf47A7E2U8 309 aa8.95□□□□□ -0.98
USP28-215ENST00000545608 PATE3B3GLJ2 98 aa8.95□□□□□ -0.98
USP28-215ENST00000545608 TRIM24O15164 1050 aa8.95□□□□□ -0.98
USP28-215ENST00000545608 GREM1O60565 184 aa8.95□□□□□ -0.98
USP28-215ENST00000545608 ADAM23O75077 832 aa8.95□□□□□ -0.98
USP28-215ENST00000545608 KRT37O76014 449 aa8.95□□□□□ -0.98
USP28-215ENST00000545608 TBX18O95935 607 aa8.95□□□□□ -0.98
USP28-215ENST00000545608 ASS1P00966 412 aaKnown RBP8.95□□□□□ -0.98
USP28-215ENST00000545608 HLA-DRAP01903 254 aa8.95□□□□□ -0.98
USP28-215ENST00000545608 IRF1P10914 325 aa8.95□□□□□ -0.98
USP28-215ENST00000545608 ADORA2BP29275 332 aa8.95□□□□□ -0.98
USP28-215ENST00000545608 TNFRSF4P43489 277 aa8.95□□□□□ -0.98
USP28-215ENST00000545608 ASPAP45381 313 aa8.95□□□□□ -0.98
USP28-215ENST00000545608 TUBP50607 506 aa8.95□□□□□ -0.98
USP28-215ENST00000545608 GAD2Q05329 585 aa8.95□□□□□ -0.98
USP28-215ENST00000545608 RNF43Q68DV7 783 aa8.95□□□□□ -0.98
USP28-215ENST00000545608 GPRIN1Q7Z2K8 1008 aa8.95□□□□□ -0.98
USP28-215ENST00000545608 UNC93AQ86WB7 457 aa8.95□□□□□ -0.98
USP28-215ENST00000545608 TMEM25Q86YD3 366 aa8.95□□□□□ -0.98
USP28-215ENST00000545608 ETFBKMTQ8IXQ9 262 aa8.95□□□□□ -0.98
USP28-215ENST00000545608 FRMD1Q8N878 549 aa8.95□□□□□ -0.98
USP28-215ENST00000545608 OLIG1Q8TAK6 271 aa8.95□□□□□ -0.98
USP28-215ENST00000545608 TAF4BQ92750 862 aa8.95□□□□□ -0.98
USP28-215ENST00000545608 OTUB2Q96DC9 234 aa8.95□□□□□ -0.98
USP28-215ENST00000545608 TWNKQ96RR1 684 aa8.95□□□□□ -0.98
USP28-215ENST00000545608 USB1Q9BQ65 265 aaKnown RBP8.95□□□□□ -0.98
USP28-215ENST00000545608 EDEM2Q9BV94 578 aa8.95□□□□□ -0.98
USP28-215ENST00000545608 KLF16Q9BXK1 252 aaPredicted RBP8.95□□□□□ -0.98
USP28-215ENST00000545608 APOBEC3GQ9HC16 384 aaKnown RBP8.95□□□□□ -0.98
USP28-215ENST00000545608 CSNK1G1Q9HCP0 422 aa8.95□□□□□ -0.98
USP28-215ENST00000545608 SPHK2Q9NRA0 654 aa8.95□□□□□ -0.98
USP28-215ENST00000545608 FAM49BQ9NUQ9 324 aa8.95□□□□□ -0.98
USP28-215ENST00000545608 OSER1Q9NX31 292 aa8.95□□□□□ -0.98
USP28-215ENST00000545608 USP25Q9UHP3 1055 aa8.95□□□□□ -0.98
USP28-215ENST00000545608 HCN2Q9UL51 889 aa8.95□□□□□ -0.98
USP28-215ENST00000545608 TRAF3IP3Q9Y228 551 aa8.95□□□□□ -0.98
USP28-215ENST00000545608 ZDHHC9Q9Y397 364 aa8.95□□□□□ -0.98
USP28-215ENST00000545608 CNOT1A5YKK6 2376 aaKnown RBP8.95□□□□□ -0.98
USP28-215ENST00000545608 PTPRDP23468 1912 aa8.95□□□□□ -0.98
USP28-215ENST00000545608 EML5Q05BV3 1969 aa8.94□□□□□ -0.98
USP28-215ENST00000545608 TBC1D3BA6NDS4 549 aa8.94□□□□□ -0.98
USP28-215ENST00000545608 PALM2-AKAP2B1ALY0 433 aaPredicted RBP8.94□□□□□ -0.98
USP28-215ENST00000545608 HHLA1C9JL84 531 aa8.94□□□□□ -0.98
USP28-215ENST00000545608 IKBKBO14920 756 aa8.94□□□□□ -0.98
USP28-215ENST00000545608 HOXC11O43248 304 aaPredicted RBP8.94□□□□□ -0.98
USP28-215ENST00000545608 CALUO43852 315 aaPredicted RBP8.94□□□□□ -0.98
Retrieved 100 of 20,778 RNA–protein pairs in 33 ms