RNA–Protein interactions for RNA: ENST00000543205.1

CLIP1-217, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

TSL 2

Gene CLIP1, Length 2,018 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-217ENST00000543205 LRRC63Q05C16 580 aa5.47□□□□□ -1.53
CLIP1-217ENST00000543205 SPAG1Q07617 926 aa5.47□□□□□ -1.53
CLIP1-217ENST00000543205 PAK1Q13153 545 aa5.47□□□□□ -1.53
CLIP1-217ENST00000543205 TUSC3Q13454 348 aa5.47□□□□□ -1.53
CLIP1-217ENST00000543205 MPP2Q14168 576 aa5.47□□□□□ -1.53
CLIP1-217ENST00000543205 SURF1Q15526 300 aa5.47□□□□□ -1.53
CLIP1-217ENST00000543205 SNRNP35Q16560 246 aaKnown RBP5.47□□□□□ -1.53
CLIP1-217ENST00000543205 EDRF1Q3B7T1 1238 aa5.47□□□□□ -1.53
CLIP1-217ENST00000543205 EPC2Q52LR7 807 aa5.47□□□□□ -1.53
CLIP1-217ENST00000543205 FAM133BQ5BKY9 247 aaKnown RBP5.47□□□□□ -1.53
CLIP1-217ENST00000543205 XKR4Q5GH76 650 aa5.47□□□□□ -1.53
CLIP1-217ENST00000543205 ANKRD40Q6AI12 368 aa5.47□□□□□ -1.53
CLIP1-217ENST00000543205 CENPPQ6IPU0 288 aa5.47□□□□□ -1.53
CLIP1-217ENST00000543205 MZT2BQ6NZ67 158 aa5.47□□□□□ -1.53
CLIP1-217ENST00000543205 KCNT2Q6UVM3 1135 aa5.47□□□□□ -1.53
CLIP1-217ENST00000543205 CRELD2Q6UXH1 353 aaPredicted RBP5.47□□□□□ -1.53
CLIP1-217ENST00000543205 FGD2Q7Z6J4 655 aa5.47□□□□□ -1.53
CLIP1-217ENST00000543205 CBWD2Q8IUF1 395 aa5.47□□□□□ -1.53
CLIP1-217ENST00000543205 BRSK2Q8IWQ3 736 aa5.47□□□□□ -1.53
CLIP1-217ENST00000543205 SULF2Q8IWU5 870 aa5.47□□□□□ -1.53
CLIP1-217ENST00000543205 COLGALT2Q8IYK4 626 aa5.47□□□□□ -1.53
CLIP1-217ENST00000543205 C19orf47Q8N9M1 422 aaKnown RBP5.47□□□□□ -1.53
CLIP1-217ENST00000543205 MLKLQ8NB16 471 aa5.47□□□□□ -1.53
CLIP1-217ENST00000543205 COLGALT1Q8NBJ5 622 aa5.47□□□□□ -1.53
CLIP1-217ENST00000543205 GSTCDQ8NEC7 633 aa5.47□□□□□ -1.53
CLIP1-217ENST00000543205 CACTINQ8WUQ7 758 aaKnown RBP5.47□□□□□ -1.53
CLIP1-217ENST00000543205 TTC17Q96AE7 1141 aa5.47□□□□□ -1.53
CLIP1-217ENST00000543205 TBC1D20Q96BZ9 403 aa5.47□□□□□ -1.53
CLIP1-217ENST00000543205 FUBP3Q96I24 572 aaKnown RBP eCLIP5.47□□□□□ -1.53
CLIP1-217ENST00000543205 TTC1Q99614 292 aa5.47□□□□□ -1.53
CLIP1-217ENST00000543205 TMEM175Q9BSA9 504 aa5.47□□□□□ -1.53
CLIP1-217ENST00000543205 C17orf80Q9BSJ5 609 aa5.47□□□□□ -1.53
CLIP1-217ENST00000543205 C11orf84Q9BUA3 381 aaPredicted RBP5.47□□□□□ -1.53
CLIP1-217ENST00000543205 CXCL16Q9H2A7 254 aa5.47□□□□□ -1.53
CLIP1-217ENST00000543205 SEMA6BQ9H3T3 888 aa5.47□□□□□ -1.53
CLIP1-217ENST00000543205 ASB7Q9H672 318 aa5.47□□□□□ -1.53
CLIP1-217ENST00000543205 NRDE2Q9H7Z3 1164 aa5.47□□□□□ -1.53
CLIP1-217ENST00000543205 PNMA8BQ9ULN7 279 aaPredicted RBP5.47□□□□□ -1.53
CLIP1-217ENST00000543205 CTNND2Q9UQB3 1225 aa5.47□□□□□ -1.53
CLIP1-217ENST00000543205 PIEZO1Q92508 2521 aa5.46□□□□□ -1.54
CLIP1-217ENST00000543205 CASTOR2A6NHX0 329 aa5.46□□□□□ -1.54
CLIP1-217ENST00000543205 RB1P06400 928 aa5.46□□□□□ -1.54
CLIP1-217ENST00000543205 PYGLP06737 847 aa5.46□□□□□ -1.54
CLIP1-217ENST00000543205 ADRB2P07550 413 aa5.46□□□□□ -1.54
CLIP1-217ENST00000543205 GALTP07902 379 aa5.46□□□□□ -1.54
CLIP1-217ENST00000543205 EPB41P11171 864 aaKnown RBP5.46□□□□□ -1.54
CLIP1-217ENST00000543205 NME2P22392 152 aa5.46□□□□□ -1.54
CLIP1-217ENST00000543205 CHKAP35790 457 aa5.46□□□□□ -1.54
CLIP1-217ENST00000543205 PPM1AP35813 382 aa5.46□□□□□ -1.54
CLIP1-217ENST00000543205 PSMC2P35998 433 aaKnown RBP5.46□□□□□ -1.54
CLIP1-217ENST00000543205 SLC11A1P49279 550 aa5.46□□□□□ -1.54
CLIP1-217ENST00000543205 STX17P56962 302 aa5.46□□□□□ -1.54
CLIP1-217ENST00000543205 FKBP3Q00688 224 aaKnown RBP5.46□□□□□ -1.54
CLIP1-217ENST00000543205 KRT17Q04695 432 aa5.46□□□□□ -1.54
CLIP1-217ENST00000543205 TMEM132DQ14C87 1099 aa5.46□□□□□ -1.54
CLIP1-217ENST00000543205 NFKBIBQ15653 356 aa5.46□□□□□ -1.54
CLIP1-217ENST00000543205 NFIL3Q16649 462 aa5.46□□□□□ -1.54
CLIP1-217ENST00000543205 AGAP9Q5VTM2 703 aa5.46□□□□□ -1.54
CLIP1-217ENST00000543205 JADE1Q6IE81 842 aa5.46□□□□□ -1.54
CLIP1-217ENST00000543205 VHLLQ6RSH7 139 aa5.46□□□□□ -1.54
CLIP1-217ENST00000543205 RBM43Q6ZSC3 357 aaKnown RBP5.46□□□□□ -1.54
CLIP1-217ENST00000543205 BEST2Q8NFU1 509 aa5.46□□□□□ -1.54
CLIP1-217ENST00000543205 SLC7A14Q8TBB6 771 aa5.46□□□□□ -1.54
CLIP1-217ENST00000543205 UBASH3BQ8TF42 649 aa5.46□□□□□ -1.54
CLIP1-217ENST00000543205 TMEM174Q8WUU8 243 aa5.46□□□□□ -1.54
CLIP1-217ENST00000543205 FBXL18Q96ME1 805 aa5.46□□□□□ -1.54
CLIP1-217ENST00000543205 UROC1Q96N76 676 aa5.46□□□□□ -1.54
CLIP1-217ENST00000543205 ZMAT2Q96NC0 199 aaKnown RBP5.46□□□□□ -1.54
CLIP1-217ENST00000543205 PPP1R10Q96QC0 940 aaKnown RBP5.46□□□□□ -1.54
CLIP1-217ENST00000543205 FNBP1Q96RU3 617 aa5.46□□□□□ -1.54
CLIP1-217ENST00000543205 CORO1BQ9BR76 489 aa5.46□□□□□ -1.54
CLIP1-217ENST00000543205 COLEC11Q9BWP8 271 aa5.46□□□□□ -1.54
CLIP1-217ENST00000543205 SMOC1Q9H4F8 434 aa5.46□□□□□ -1.54
CLIP1-217ENST00000543205 CBX8Q9HC52 389 aa5.46□□□□□ -1.54
CLIP1-217ENST00000543205 CD248Q9HCU0 757 aa5.46□□□□□ -1.54
CLIP1-217ENST00000543205 DMAC2Q9NW81 257 aa5.46□□□□□ -1.54
CLIP1-217ENST00000543205 KCNK4Q9NYG8 393 aa5.46□□□□□ -1.54
CLIP1-217ENST00000543205 SPG21Q9NZD8 308 aa5.46□□□□□ -1.54
CLIP1-217ENST00000543205 DNAJB4Q9UDY4 337 aa5.46□□□□□ -1.54
CLIP1-217ENST00000543205 UBQLN1Q9UMX0 589 aaKnown RBP5.46□□□□□ -1.54
CLIP1-217ENST00000543205 PLAGL2Q9UPG8 496 aa5.46□□□□□ -1.54
CLIP1-217ENST00000543205 ANKRD6Q9Y2G4 727 aa5.46□□□□□ -1.54
CLIP1-217ENST00000543205 PRG3Q9Y2Y8 225 aaPredicted RBP5.46□□□□□ -1.54
CLIP1-217ENST00000543205 DERAQ9Y315 318 aa5.46□□□□□ -1.54
CLIP1-217ENST00000543205 PCDHB14Q9Y5E9 798 aa5.46□□□□□ -1.54
CLIP1-217ENST00000543205 TRIM49BA6NDI0 452 aa5.45□□□□□ -1.54
CLIP1-217ENST00000543205 NT5C1B-RDH14C9J2C7 533 aa5.45□□□□□ -1.54
CLIP1-217ENST00000543205 C5orf67F2Z3F1 127 aa5.45□□□□□ -1.54
CLIP1-217ENST00000543205 NRP1O14786 923 aa5.45□□□□□ -1.54
CLIP1-217ENST00000543205 MEFVO15553 781 aaPredicted RBP5.45□□□□□ -1.54
CLIP1-217ENST00000543205 ADAM11O75078 769 aa5.45□□□□□ -1.54
CLIP1-217ENST00000543205 TADA2AO75478 443 aa5.45□□□□□ -1.54
CLIP1-217ENST00000543205 FGF18O76093 207 aa5.45□□□□□ -1.54
CLIP1-217ENST00000543205 SNUPNO95149 360 aaKnown RBP5.45□□□□□ -1.54
CLIP1-217ENST00000543205 FGFR1OPO95684 399 aaKnown RBP5.45□□□□□ -1.54
CLIP1-217ENST00000543205 CYP11A1P05108 521 aa5.45□□□□□ -1.54
CLIP1-217ENST00000543205 NFICP08651 508 aa5.45□□□□□ -1.54
CLIP1-217ENST00000543205 TMEM191BP0C7N4 346 aa5.45□□□□□ -1.54
CLIP1-217ENST00000543205 LINC00271P0C7V0 271 aa5.45□□□□□ -1.54
CLIP1-217ENST00000543205 DLATP10515 647 aaKnown RBP5.45□□□□□ -1.54
Retrieved 100 of 20,778 RNA–protein pairs in 21.3 ms