RNA–Protein interactions for RNA: ENST00000543140.5

COL4A1-204, Transcript of collagen type IV alpha 1 chain, humanhuman

TSL 1 (best) BASIC

Gene COL4A1, Length 2,547 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A1-204ENST00000543140 TADA2BQ86TJ2 420 aa16.99■□□□□ 0.31
COL4A1-204ENST00000543140 PDIK1LQ8N165 341 aa16.99■□□□□ 0.31
COL4A1-204ENST00000543140 PPP1R10Q96QC0 940 aaKnown RBP16.99■□□□□ 0.31
COL4A1-204ENST00000543140 ZIC5Q96T25 663 aa16.99■□□□□ 0.31
COL4A1-204ENST00000543140 RASSF4Q9H2L5 321 aa16.99■□□□□ 0.31
COL4A1-204ENST00000543140 TIMM13Q9Y5L4 95 aaPredicted RBP16.99■□□□□ 0.31
COL4A1-204ENST00000543140 SYNJ2BP-COX16A0A087WUM0 186 aa16.99■□□□□ 0.31
COL4A1-204ENST00000543140 TCP11X1B4DZS4 312 aa16.99■□□□□ 0.31
COL4A1-204ENST00000543140 MDM4O15151 490 aa16.99■□□□□ 0.31
COL4A1-204ENST00000543140 AVILO75366 819 aa16.99■□□□□ 0.31
COL4A1-204ENST00000543140 L1CAMP32004 1257 aa16.99■□□□□ 0.31
COL4A1-204ENST00000543140 PTPN9P43378 593 aa16.99■□□□□ 0.31
COL4A1-204ENST00000543140 C11orf84Q9BUA3 381 aaPredicted RBP16.99■□□□□ 0.31
COL4A1-204ENST00000543140 OSBPL7Q9BZF2 842 aa16.99■□□□□ 0.31
COL4A1-204ENST00000543140 CCDC134Q9H6E4 229 aa16.99■□□□□ 0.31
COL4A1-204ENST00000543140 NRDE2Q9H7Z3 1164 aa16.99■□□□□ 0.31
COL4A1-204ENST00000543140 RAB6BQ9NRW1 208 aa16.99■□□□□ 0.31
COL4A1-204ENST00000543140 COX16Q9P0S2 106 aa16.99■□□□□ 0.31
COL4A1-204ENST00000543140 GABRQQ9UN88 632 aa16.99■□□□□ 0.31
COL4A1-204ENST00000543140 AP4E1Q9UPM8 1137 aa16.99■□□□□ 0.31
COL4A1-204ENST00000543140 CHMP2BQ9UQN3 213 aa16.99■□□□□ 0.31
COL4A1-204ENST00000543140 ZBED1O96006 694 aa16.98■□□□□ 0.31
COL4A1-204ENST00000543140 NDUFV1P49821 464 aa16.98■□□□□ 0.31
COL4A1-204ENST00000543140 GBE1Q04446 702 aa16.98■□□□□ 0.31
COL4A1-204ENST00000543140 KIAA0319Q5VV43 1072 aa16.98■□□□□ 0.31
COL4A1-204ENST00000543140 SLC9A4Q6AI14 798 aa16.98■□□□□ 0.31
COL4A1-204ENST00000543140 TRABD2AQ86V40 505 aa16.98■□□□□ 0.31
COL4A1-204ENST00000543140 FAM131BQ86XD5 332 aa16.98■□□□□ 0.31
COL4A1-204ENST00000543140 IGDCC3Q8IVU1 814 aa16.98■□□□□ 0.31
COL4A1-204ENST00000543140 PALM2Q8IXS6 379 aa16.98■□□□□ 0.31
COL4A1-204ENST00000543140 PYROXD2Q8N2H3 581 aa16.98■□□□□ 0.31
COL4A1-204ENST00000543140 MICALL1Q8N3F8 863 aa16.98■□□□□ 0.31
COL4A1-204ENST00000543140 GSTCDQ8NEC7 633 aa16.98■□□□□ 0.31
COL4A1-204ENST00000543140 FAF2Q96CS3 445 aa16.98■□□□□ 0.31
COL4A1-204ENST00000543140 MTG1Q9BT17 334 aaPredicted RBP16.98■□□□□ 0.31
COL4A1-204ENST00000543140 TSPYL2Q9H2G4 693 aaPredicted RBP16.98■□□□□ 0.31
COL4A1-204ENST00000543140 FAM105AQ9NUU6 356 aa16.98■□□□□ 0.31
COL4A1-204ENST00000543140 FASTKD2Q9NYY8 710 aaKnown RBP eCLIP16.98■□□□□ 0.31
COL4A1-204ENST00000543140 GTF2IRD1Q9UHL9 959 aa16.98■□□□□ 0.31
COL4A1-204ENST00000543140 RABGEF1Q9UJ41 708 aa16.98■□□□□ 0.31
COL4A1-204ENST00000543140 ZNF638Q14966 1978 aaKnown RBP16.98■□□□□ 0.31
COL4A1-204ENST00000543140 CHRNA1P02708 482 aa16.98■□□□□ 0.31
COL4A1-204ENST00000543140 PTPN1P18031 435 aaKnown RBP16.98■□□□□ 0.31
COL4A1-204ENST00000543140 WARSP23381 471 aaKnown RBP16.98■□□□□ 0.31
COL4A1-204ENST00000543140 PITX1P78337 314 aaPredicted RBP16.98■□□□□ 0.31
COL4A1-204ENST00000543140 RNASELQ05823 741 aaKnown RBP16.98■□□□□ 0.31
COL4A1-204ENST00000543140 TRIM32Q13049 653 aa16.98■□□□□ 0.31
COL4A1-204ENST00000543140 MDH1BQ5I0G3 518 aa16.98■□□□□ 0.31
COL4A1-204ENST00000543140 DEFB106AQ8N104 65 aa16.98■□□□□ 0.31
COL4A1-204ENST00000543140 C4orf33Q8N1A6 199 aa16.98■□□□□ 0.31
COL4A1-204ENST00000543140 RIBC1Q8N443 379 aaPredicted RBP16.98■□□□□ 0.31
COL4A1-204ENST00000543140 TOP6BLQ8N6T0 577 aa16.98■□□□□ 0.31
COL4A1-204ENST00000543140 ATP11CQ8NB49 1132 aa16.98■□□□□ 0.31
COL4A1-204ENST00000543140 FBF1Q8TES7 1133 aa16.98■□□□□ 0.31
COL4A1-204ENST00000543140 TRIB2Q92519 343 aa16.98■□□□□ 0.31
COL4A1-204ENST00000543140 CENPIQ92674 756 aaPredicted RBP16.98■□□□□ 0.31
COL4A1-204ENST00000543140 PAIP2Q9BPZ3 127 aaKnown RBP16.98■□□□□ 0.31
COL4A1-204ENST00000543140 ZNF670Q9BS34 389 aa16.98■□□□□ 0.31
COL4A1-204ENST00000543140 MED10Q9BTT4 135 aa16.98■□□□□ 0.31
COL4A1-204ENST00000543140 DUSP16Q9BY84 665 aa16.98■□□□□ 0.31
COL4A1-204ENST00000543140 FGFR1OP2Q9NVK5 253 aa16.98■□□□□ 0.31
COL4A1-204ENST00000543140 MIOSQ9NXC5 875 aa16.98■□□□□ 0.31
COL4A1-204ENST00000543140 NKIRAS1Q9NYS0 192 aa16.98■□□□□ 0.31
COL4A1-204ENST00000543140 GGA2Q9UJY4 613 aa16.98■□□□□ 0.31
COL4A1-204ENST00000543140 TGM2P21980 687 aa16.97■□□□□ 0.31
COL4A1-204ENST00000543140 LRPAP1P30533 357 aa16.97■□□□□ 0.31
COL4A1-204ENST00000543140 STX2P32856 288 aa16.97■□□□□ 0.31
COL4A1-204ENST00000543140 ACADSBP45954 432 aa16.97■□□□□ 0.31
COL4A1-204ENST00000543140 RPL34P49207 117 aaKnown RBP16.97■□□□□ 0.31
COL4A1-204ENST00000543140 SLC10A2Q12908 348 aaPredicted RBP16.97■□□□□ 0.31
COL4A1-204ENST00000543140 DCAF6Q58WW2 860 aa16.97■□□□□ 0.31
COL4A1-204ENST00000543140 PAQR9Q6ZVX9 377 aa16.97■□□□□ 0.31
COL4A1-204ENST00000543140 CCDC110Q8TBZ0 833 aa16.97■□□□□ 0.31
COL4A1-204ENST00000543140 HSFY1Q96LI6 401 aa16.97■□□□□ 0.31
COL4A1-204ENST00000543140 HNRNPABQ99729 332 aaKnown RBP16.97■□□□□ 0.31
COL4A1-204ENST00000543140 TRABDQ9H4I3 376 aa16.97■□□□□ 0.31
COL4A1-204ENST00000543140 TMPRSS4Q9NRS4 437 aa16.97■□□□□ 0.31
COL4A1-204ENST00000543140 MFHAS1Q9Y4C4 1052 aa16.97■□□□□ 0.31
COL4A1-204ENST00000543140 TRPV2Q9Y5S1 764 aa16.97■□□□□ 0.31
COL4A1-204ENST00000543140 A0A1W2PPM1 405 aa16.97■□□□□ 0.31
COL4A1-204ENST00000543140 XPO1O14980 1071 aaKnown RBP16.97■□□□□ 0.31
COL4A1-204ENST00000543140 SLC10A3P09131 477 aa16.97■□□□□ 0.31
COL4A1-204ENST00000543140 ELK3P41970 407 aa16.97■□□□□ 0.31
COL4A1-204ENST00000543140 CLCNKBP51801 687 aa16.97■□□□□ 0.31
COL4A1-204ENST00000543140 CCDC121Q6ZUS5 278 aa16.97■□□□□ 0.31
COL4A1-204ENST00000543140 NETO2Q8NC67 525 aa16.97■□□□□ 0.31
COL4A1-204ENST00000543140 RNF169Q8NCN4 708 aa16.97■□□□□ 0.31
COL4A1-204ENST00000543140 CCDC197Q8NCU1 140 aa16.97■□□□□ 0.31
COL4A1-204ENST00000543140 SENP8Q96LD8 212 aa16.97■□□□□ 0.31
COL4A1-204ENST00000543140 KCTD15Q96SI1 283 aaPredicted RBP16.97■□□□□ 0.31
COL4A1-204ENST00000543140 TSPAN18Q96SJ8 248 aa16.97■□□□□ 0.31
COL4A1-204ENST00000543140 MTMR10Q9NXD2 777 aa16.97■□□□□ 0.31
COL4A1-204ENST00000543140 DDX43Q9NXZ2 648 aaKnown RBP16.97■□□□□ 0.31
COL4A1-204ENST00000543140 ZMYND8Q9ULU4 1186 aaPredicted RBP16.97■□□□□ 0.31
COL4A1-204ENST00000543140 NR2E3Q9Y5X4 410 aa16.97■□□□□ 0.31
COL4A1-204ENST00000543140 SCN10AQ9Y5Y9 1956 aa16.96■□□□□ 0.31
COL4A1-204ENST00000543140 ATXN2Q99700 1313 aaKnown RBP16.96■□□□□ 0.31
COL4A1-204ENST00000543140 E7ESA3 106 aa16.96■□□□□ 0.31
COL4A1-204ENST00000543140 PHBP35232 272 aa16.96■□□□□ 0.31
COL4A1-204ENST00000543140 SULT1E1P49888 294 aa16.96■□□□□ 0.31
Retrieved 100 of 20,778 RNA–protein pairs in 23.9 ms