RNA–Protein interactions for RNA: ENST00000541770.1

CLSTN3-212, Transcript of calsyntenin 3, humanhuman

TSL 3

Gene CLSTN3, Length 568 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLSTN3-212ENST00000541770 WDR72Q3MJ13 1102 aa9.23□□□□□ -0.93
CLSTN3-212ENST00000541770 TCP11X2Q5H9J9 407 aa9.23□□□□□ -0.93
CLSTN3-212ENST00000541770 ZNF667Q5HYK9 610 aa9.23□□□□□ -0.93
CLSTN3-212ENST00000541770 LPCAT2Q7L5N7 544 aa9.23□□□□□ -0.93
CLSTN3-212ENST00000541770 DHX40Q8IX18 779 aaKnown RBP9.23□□□□□ -0.93
CLSTN3-212ENST00000541770 PDCL2Q8N4E4 241 aa9.23□□□□□ -0.93
CLSTN3-212ENST00000541770 HDDC3Q8N4P3 179 aa9.23□□□□□ -0.93
CLSTN3-212ENST00000541770 AOPEPQ8N6M6 819 aa9.23□□□□□ -0.93
CLSTN3-212ENST00000541770 ARL14EPQ8N8R7 260 aaPredicted RBP9.23□□□□□ -0.93
CLSTN3-212ENST00000541770 CCDC150Q8NCX0 1101 aa9.23□□□□□ -0.93
CLSTN3-212ENST00000541770 CCDC26Q8TAB7 109 aa9.23□□□□□ -0.93
CLSTN3-212ENST00000541770 USP33Q8TEY7 942 aa9.23□□□□□ -0.93
CLSTN3-212ENST00000541770 SPACA7Q96KW9 195 aa9.23□□□□□ -0.93
CLSTN3-212ENST00000541770 TUBGCP2Q9BSJ2 902 aa9.23□□□□□ -0.93
CLSTN3-212ENST00000541770 IMPG2Q9BZV3 1241 aa9.23□□□□□ -0.93
CLSTN3-212ENST00000541770 FAM124BQ9H5Z6 455 aaPredicted RBP9.23□□□□□ -0.93
CLSTN3-212ENST00000541770 MMRN2Q9H8L6 949 aa9.23□□□□□ -0.93
CLSTN3-212ENST00000541770 FANCLQ9NW38 375 aa9.23□□□□□ -0.93
CLSTN3-212ENST00000541770 UXTQ9UBK9 157 aaPredicted RBP9.23□□□□□ -0.93
CLSTN3-212ENST00000541770 L1RE1Q9UN81 338 aa9.23□□□□□ -0.93
CLSTN3-212ENST00000541770 MSRB2Q9Y3D2 182 aa9.23□□□□□ -0.93
CLSTN3-212ENST00000541770 FAM208BQ5VWN6 2430 aa9.23□□□□□ -0.93
CLSTN3-212ENST00000541770 GTPBP10A4D1E9 387 aaKnown RBP9.22□□□□□ -0.93
CLSTN3-212ENST00000541770 LRRC10BA6NIK2 292 aa9.22□□□□□ -0.93
CLSTN3-212ENST00000541770 ZNF18P17022 549 aa9.22□□□□□ -0.93
CLSTN3-212ENST00000541770 WARSP23381 471 aaKnown RBP9.22□□□□□ -0.93
CLSTN3-212ENST00000541770 TIE1P35590 1138 aa9.22□□□□□ -0.93
CLSTN3-212ENST00000541770 LHX1P48742 406 aa9.22□□□□□ -0.93
CLSTN3-212ENST00000541770 NOP14P78316 857 aaKnown RBP9.22□□□□□ -0.93
CLSTN3-212ENST00000541770 SMARCB1Q12824 385 aa9.22□□□□□ -0.93
CLSTN3-212ENST00000541770 ZNF268Q14587 947 aaPredicted RBP9.22□□□□□ -0.93
CLSTN3-212ENST00000541770 IQCB1Q15051 598 aa9.22□□□□□ -0.93
CLSTN3-212ENST00000541770 ZNF77Q15935 545 aa9.22□□□□□ -0.93
CLSTN3-212ENST00000541770 CRY1Q16526 586 aa9.22□□□□□ -0.93
CLSTN3-212ENST00000541770 SOWAHAQ2M3V2 549 aa9.22□□□□□ -0.93
CLSTN3-212ENST00000541770 EML3Q32P44 896 aa9.22□□□□□ -0.93
CLSTN3-212ENST00000541770 MIIPQ5JXC2 388 aa9.22□□□□□ -0.93
CLSTN3-212ENST00000541770 RASSF3Q86WH2 238 aa9.22□□□□□ -0.93
CLSTN3-212ENST00000541770 CREBRFQ8IUR6 639 aa9.22□□□□□ -0.93
CLSTN3-212ENST00000541770 SCN4BQ8IWT1 228 aa9.22□□□□□ -0.93
CLSTN3-212ENST00000541770 ADGRF2Q8IZF7 708 aa9.22□□□□□ -0.93
CLSTN3-212ENST00000541770 CHCHD4Q8N4Q1 142 aa9.22□□□□□ -0.93
CLSTN3-212ENST00000541770 DEFB119Q8N690 84 aa9.22□□□□□ -0.93
CLSTN3-212ENST00000541770 FRMD1Q8N878 549 aa9.22□□□□□ -0.93
CLSTN3-212ENST00000541770 TXNDC5Q8NBS9 432 aaKnown RBP9.22□□□□□ -0.93
CLSTN3-212ENST00000541770 LMO3Q8TAP4 145 aa9.22□□□□□ -0.93
CLSTN3-212ENST00000541770 SH3RF2Q8TEC5 729 aa9.22□□□□□ -0.93
CLSTN3-212ENST00000541770 SEMA4DQ92854 862 aa9.22□□□□□ -0.93
CLSTN3-212ENST00000541770 SLC22A12Q96S37 553 aa9.22□□□□□ -0.93
CLSTN3-212ENST00000541770 MMS19Q96T76 1030 aa9.22□□□□□ -0.93
CLSTN3-212ENST00000541770 ACBD6Q9BR61 282 aa9.22□□□□□ -0.93
CLSTN3-212ENST00000541770 HSD3B7Q9H2F3 369 aa9.22□□□□□ -0.93
CLSTN3-212ENST00000541770 LINC00597Q9H2U6 94 aa9.22□□□□□ -0.93
CLSTN3-212ENST00000541770 ZDHHC4Q9NPG8 344 aa9.22□□□□□ -0.93
CLSTN3-212ENST00000541770 TMEM74BQ9NUR3 256 aa9.22□□□□□ -0.93
CLSTN3-212ENST00000541770 TMLHEQ9NVH6 421 aa9.22□□□□□ -0.93
CLSTN3-212ENST00000541770 EVLQ9UI08 416 aaPredicted RBP9.22□□□□□ -0.93
CLSTN3-212ENST00000541770 MMP17Q9ULZ9 603 aa9.22□□□□□ -0.93
CLSTN3-212ENST00000541770 C2orf78A6NCI8 922 aa9.21□□□□□ -0.94
CLSTN3-212ENST00000541770 BECN2A8MW95 431 aa9.21□□□□□ -0.94
CLSTN3-212ENST00000541770 K7EQS6 105 aa9.21□□□□□ -0.94
CLSTN3-212ENST00000541770 TAF4O00268 1085 aa9.21□□□□□ -0.94
CLSTN3-212ENST00000541770 TADA3O75528 432 aa9.21□□□□□ -0.94
CLSTN3-212ENST00000541770 KLF8O95600 359 aaPredicted RBP9.21□□□□□ -0.94
CLSTN3-212ENST00000541770 NFATC1O95644 943 aa9.21□□□□□ -0.94
CLSTN3-212ENST00000541770 HDCP19113 662 aa9.21□□□□□ -0.94
CLSTN3-212ENST00000541770 ACAT1P24752 427 aaKnown RBP9.21□□□□□ -0.94
CLSTN3-212ENST00000541770 CYP2F1P24903 491 aa9.21□□□□□ -0.94
CLSTN3-212ENST00000541770 PCSK1P29120 753 aa9.21□□□□□ -0.94
CLSTN3-212ENST00000541770 PTGER3P43115 390 aa9.21□□□□□ -0.94
CLSTN3-212ENST00000541770 ASPAP45381 313 aa9.21□□□□□ -0.94
CLSTN3-212ENST00000541770 ZNF445P59923 1031 aa9.21□□□□□ -0.94
CLSTN3-212ENST00000541770 RPL10AP62906 217 aaKnown RBP9.21□□□□□ -0.94
CLSTN3-212ENST00000541770 USP4Q13107 963 aa9.21□□□□□ -0.94
CLSTN3-212ENST00000541770 KRT31Q15323 416 aa9.21□□□□□ -0.94
CLSTN3-212ENST00000541770 NFE2Q16621 373 aaPredicted RBP9.21□□□□□ -0.94
CLSTN3-212ENST00000541770 VWA3BQ502W6 1294 aa9.21□□□□□ -0.94
CLSTN3-212ENST00000541770 HSP90AA4PQ58FG1 418 aa9.21□□□□□ -0.94
CLSTN3-212ENST00000541770 LYSMD4Q5XG99 296 aa9.21□□□□□ -0.94
CLSTN3-212ENST00000541770 TMEM92Q6UXU6 159 aa9.21□□□□□ -0.94
CLSTN3-212ENST00000541770 SYT12Q8IV01 421 aa9.21□□□□□ -0.94
CLSTN3-212ENST00000541770 ALLCQ8N6M5 410 aa9.21□□□□□ -0.94
CLSTN3-212ENST00000541770 EHBP1Q8NDI1 1231 aa9.21□□□□□ -0.94
CLSTN3-212ENST00000541770 ANKRD20A12PQ8NF67 263 aa9.21□□□□□ -0.94
CLSTN3-212ENST00000541770 WHAMMQ8TF30 809 aa9.21□□□□□ -0.94
CLSTN3-212ENST00000541770 KBTBD7Q8WVZ9 684 aa9.21□□□□□ -0.94
CLSTN3-212ENST00000541770 HMGB4Q8WW32 186 aa9.21□□□□□ -0.94
CLSTN3-212ENST00000541770 COL26A1Q96A83 441 aa9.21□□□□□ -0.94
CLSTN3-212ENST00000541770 NIF3L1Q9GZT8 377 aa9.21□□□□□ -0.94
CLSTN3-212ENST00000541770 NDST4Q9H3R1 872 aa9.21□□□□□ -0.94
CLSTN3-212ENST00000541770 CYP3A43Q9HB55 503 aa9.21□□□□□ -0.94
CLSTN3-212ENST00000541770 APOBEC3GQ9HC16 384 aaKnown RBP9.21□□□□□ -0.94
CLSTN3-212ENST00000541770 CBX8Q9HC52 389 aa9.21□□□□□ -0.94
CLSTN3-212ENST00000541770 POLMQ9NP87 494 aaPredicted RBP9.21□□□□□ -0.94
CLSTN3-212ENST00000541770 DDX43Q9NXZ2 648 aaKnown RBP9.21□□□□□ -0.94
CLSTN3-212ENST00000541770 NXF1Q9UBU9 619 aaKnown RBP9.21□□□□□ -0.94
CLSTN3-212ENST00000541770 LIMA1Q9UHB6 759 aaKnown RBP9.21□□□□□ -0.94
CLSTN3-212ENST00000541770 MBD1Q9UIS9 605 aaPredicted RBP9.21□□□□□ -0.94
CLSTN3-212ENST00000541770 ASCC3Q8N3C0 2202 aaKnown RBP9.21□□□□□ -0.94
CLSTN3-212ENST00000541770 PI4KAP42356 2102 aa9.2□□□□□ -0.94
Retrieved 100 of 20,778 RNA–protein pairs in 18.5 ms