RNA–Protein interactions for RNA: ENST00000540846.6

SMAD3-204, Transcript of SMAD family member 3, humanhuman

TSL 1 (best) BASIC

Gene SMAD3, Length 1,567 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMAD3-204ENST00000540846 FAM102AQ5T9C2 384 aaPredicted RBP13.06□□□□□ -0.32
SMAD3-204ENST00000540846 DUPD1Q68J44 220 aa13.06□□□□□ -0.32
SMAD3-204ENST00000540846 KIAA1841Q6NSI8 718 aa13.06□□□□□ -0.32
SMAD3-204ENST00000540846 RNF19BQ6ZMZ0 732 aa13.06□□□□□ -0.32
SMAD3-204ENST00000540846 FAM183BPQ6ZVS7 135 aa13.06□□□□□ -0.32
SMAD3-204ENST00000540846 TMEM110Q86TL2 294 aa13.06□□□□□ -0.32
SMAD3-204ENST00000540846 CCDC50Q8IVM0 306 aa13.06□□□□□ -0.32
SMAD3-204ENST00000540846 RCOR2Q8IZ40 523 aa13.06□□□□□ -0.32
SMAD3-204ENST00000540846 MREGQ8N565 214 aa13.06□□□□□ -0.32
SMAD3-204ENST00000540846 POF1BQ8WVV4 589 aa13.06□□□□□ -0.32
SMAD3-204ENST00000540846 SLITRK1Q96PX8 696 aa13.06□□□□□ -0.32
SMAD3-204ENST00000540846 SMOQ99835 787 aa13.06□□□□□ -0.32
SMAD3-204ENST00000540846 ERP44Q9BS26 406 aa13.06□□□□□ -0.32
SMAD3-204ENST00000540846 TRIM51Q9BSJ1 452 aa13.06□□□□□ -0.32
SMAD3-204ENST00000540846 OSBPL8Q9BZF1 889 aa13.06□□□□□ -0.32
SMAD3-204ENST00000540846 ST7Q9NRC1 585 aa13.06□□□□□ -0.32
SMAD3-204ENST00000540846 FAM114A2Q9NRY5 505 aa13.06□□□□□ -0.32
SMAD3-204ENST00000540846 KRT82Q9NSB4 513 aa13.06□□□□□ -0.32
SMAD3-204ENST00000540846 DDX56Q9NY93 547 aaKnown RBP13.06□□□□□ -0.32
SMAD3-204ENST00000540846 MSRAQ9UJ68 235 aa13.06□□□□□ -0.32
SMAD3-204ENST00000540846 UTP11Q9Y3A2 253 aaKnown RBP13.06□□□□□ -0.32
SMAD3-204ENST00000540846 MYO16Q9Y6X6 1858 aa13.05□□□□□ -0.32
SMAD3-204ENST00000540846 HHLA1C9JL84 531 aa13.05□□□□□ -0.32
SMAD3-204ENST00000540846 TEX28O15482 410 aa13.05□□□□□ -0.32
SMAD3-204ENST00000540846 DAPK3O43293 454 aa13.05□□□□□ -0.32
SMAD3-204ENST00000540846 ABLIM3O94929 683 aa13.05□□□□□ -0.32
SMAD3-204ENST00000540846 CNPP09543 421 aaKnown RBP13.05□□□□□ -0.32
SMAD3-204ENST00000540846 NPR3P17342 541 aa13.05□□□□□ -0.32
SMAD3-204ENST00000540846 OR1D2P34982 312 aa13.05□□□□□ -0.32
SMAD3-204ENST00000540846 IRS1P35568 1242 aa13.05□□□□□ -0.32
SMAD3-204ENST00000540846 GJC1P36383 396 aa13.05□□□□□ -0.32
SMAD3-204ENST00000540846 CETN2P41208 172 aa13.05□□□□□ -0.32
SMAD3-204ENST00000540846 DRG2P55039 364 aaKnown RBP13.05□□□□□ -0.32
SMAD3-204ENST00000540846 SMC1AQ14683 1233 aaKnown RBP13.05□□□□□ -0.32
SMAD3-204ENST00000540846 PPP2R2DQ66LE6 453 aa13.05□□□□□ -0.32
SMAD3-204ENST00000540846 PMF1Q6P1K2 205 aa13.05□□□□□ -0.32
SMAD3-204ENST00000540846 CCDC137Q6PK04 289 aaKnown RBP13.05□□□□□ -0.32
SMAD3-204ENST00000540846 OLFML1Q6UWY5 402 aa13.05□□□□□ -0.32
SMAD3-204ENST00000540846 ZDHHC17Q8IUH5 632 aa13.05□□□□□ -0.32
SMAD3-204ENST00000540846 DCP1BQ8IZD4 617 aaKnown RBP13.05□□□□□ -0.32
SMAD3-204ENST00000540846 ARFGAP1Q8N6T3 406 aa13.05□□□□□ -0.32
SMAD3-204ENST00000540846 EMC1Q8N766 993 aa13.05□□□□□ -0.32
SMAD3-204ENST00000540846 FUBP3Q96I24 572 aaKnown RBP eCLIP13.05□□□□□ -0.32
SMAD3-204ENST00000540846 GDAP1L1Q96MZ0 367 aa13.05□□□□□ -0.32
SMAD3-204ENST00000540846 DUSP16Q9BY84 665 aa13.05□□□□□ -0.32
SMAD3-204ENST00000540846 TLR9Q9NR96 1032 aa13.05□□□□□ -0.32
SMAD3-204ENST00000540846 MRPL17Q9NRX2 175 aaKnown RBP13.05□□□□□ -0.32
SMAD3-204ENST00000540846 A0A1W2PPC1 479 aa13.04□□□□□ -0.32
SMAD3-204ENST00000540846 C2orf71A6NGG8 1288 aa13.04□□□□□ -0.32
SMAD3-204ENST00000540846 C2CD4BA6NLJ0 364 aa13.04□□□□□ -0.32
SMAD3-204ENST00000540846 HIDE1A8MVS5 230 aa13.04□□□□□ -0.32
SMAD3-204ENST00000540846 DPYSL4O14531 572 aa13.04□□□□□ -0.32
SMAD3-204ENST00000540846 FAM153BP0C7A2 387 aa13.04□□□□□ -0.32
SMAD3-204ENST00000540846 CPB1P15086 417 aa13.04□□□□□ -0.32
SMAD3-204ENST00000540846 GPD1P21695 349 aa13.04□□□□□ -0.32
SMAD3-204ENST00000540846 BDNFP23560 247 aa13.04□□□□□ -0.32
SMAD3-204ENST00000540846 SCNN1AP37088 669 aa13.04□□□□□ -0.32
SMAD3-204ENST00000540846 RGS7P49802 495 aa13.04□□□□□ -0.32
SMAD3-204ENST00000540846 ZNF143P52747 638 aaPredicted RBP13.04□□□□□ -0.32
SMAD3-204ENST00000540846 GPS2Q13227 327 aa13.04□□□□□ -0.32
SMAD3-204ENST00000540846 RAB33AQ14088 237 aa13.04□□□□□ -0.32
SMAD3-204ENST00000540846 HLTFQ14527 1009 aaKnown RBP eCLIP13.04□□□□□ -0.32
SMAD3-204ENST00000540846 NFE2Q16621 373 aaPredicted RBP13.04□□□□□ -0.32
SMAD3-204ENST00000540846 FAM153CQ494X1 144 aa13.04□□□□□ -0.32
SMAD3-204ENST00000540846 TXNRD3NBQ6F5E7 133 aa13.04□□□□□ -0.32
SMAD3-204ENST00000540846 OR6B2Q6IFH4 312 aa13.04□□□□□ -0.32
SMAD3-204ENST00000540846 C4orf50Q6ZRC1 276 aa13.04□□□□□ -0.32
SMAD3-204ENST00000540846 ANKS1BQ7Z6G8 1248 aa13.04□□□□□ -0.32
SMAD3-204ENST00000540846 MRPL43Q8N983 215 aaKnown RBP13.04□□□□□ -0.32
SMAD3-204ENST00000540846 ATAD1Q8NBU5 361 aa13.04□□□□□ -0.32
SMAD3-204ENST00000540846 SMARCD1Q96GM5 515 aa13.04□□□□□ -0.32
SMAD3-204ENST00000540846 PIWIL1Q96J94 861 aaKnown RBP13.04□□□□□ -0.32
SMAD3-204ENST00000540846 PGLYRP2Q96PD5 576 aa13.04□□□□□ -0.32
SMAD3-204ENST00000540846 KCNK16Q96T55 309 aa13.04□□□□□ -0.32
SMAD3-204ENST00000540846 TCF25Q9BQ70 676 aa13.04□□□□□ -0.32
SMAD3-204ENST00000540846 CNPY3Q9BT09 278 aa13.04□□□□□ -0.32
SMAD3-204ENST00000540846 CERS4Q9HA82 394 aa13.04□□□□□ -0.32
SMAD3-204ENST00000540846 APOBEC3CQ9NRW3 190 aaKnown RBP eCLIP13.04□□□□□ -0.32
SMAD3-204ENST00000540846 HOMER3Q9NSC5 361 aa13.04□□□□□ -0.32
SMAD3-204ENST00000540846 FAM153AQ9UHL3 310 aa13.04□□□□□ -0.32
SMAD3-204ENST00000540846 MYO9BQ13459 2157 aa13.04□□□□□ -0.32
SMAD3-204ENST00000540846 XPO1O14980 1071 aaKnown RBP13.03□□□□□ -0.32
SMAD3-204ENST00000540846 LPXNO60711 386 aa13.03□□□□□ -0.32
SMAD3-204ENST00000540846 AP1G2O75843 785 aa13.03□□□□□ -0.32
SMAD3-204ENST00000540846 KRT7P08729 469 aa13.03□□□□□ -0.32
SMAD3-204ENST00000540846 FAM200BP0CF97 657 aa13.03□□□□□ -0.32
SMAD3-204ENST00000540846 CYP2F1P24903 491 aa13.03□□□□□ -0.32
SMAD3-204ENST00000540846 GBP1P32455 592 aa13.03□□□□□ -0.32
SMAD3-204ENST00000540846 PCK1P35558 622 aa13.03□□□□□ -0.32
SMAD3-204ENST00000540846 MAGEA11P43364 429 aa13.03□□□□□ -0.32
SMAD3-204ENST00000540846 NDUFV1P49821 464 aa13.03□□□□□ -0.32
SMAD3-204ENST00000540846 CBX1P83916 185 aa13.03□□□□□ -0.32
SMAD3-204ENST00000540846 SLC6A3Q01959 620 aa13.03□□□□□ -0.32
SMAD3-204ENST00000540846 SMARCB1Q12824 385 aa13.03□□□□□ -0.32
SMAD3-204ENST00000540846 GPM6BQ13491 265 aa13.03□□□□□ -0.32
SMAD3-204ENST00000540846 HADHQ16836 314 aaKnown RBP13.03□□□□□ -0.32
SMAD3-204ENST00000540846 LRIT3Q3SXY7 679 aa13.03□□□□□ -0.32
SMAD3-204ENST00000540846 ATP13A4Q4VNC1 1196 aa13.03□□□□□ -0.32
SMAD3-204ENST00000540846 TRNP1Q6NT89 227 aa13.03□□□□□ -0.32
SMAD3-204ENST00000540846 MFSD7Q6UXD7 560 aa13.03□□□□□ -0.32
Retrieved 100 of 20,778 RNA–protein pairs in 32.6 ms