RNA–Protein interactions for RNA: ENST00000540798.5

RTN3-210, Transcript of reticulon 3, humanhuman

TSL 1 (best) BASIC

Gene RTN3, Length 3,124 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTN3-210ENST00000540798 CHST12Q9NRB3 414 aa14.34□□□□□ -0.11
RTN3-210ENST00000540798 XPO7Q9UIA9 1087 aaKnown RBP14.34□□□□□ -0.11
RTN3-210ENST00000540798 PCNTO95613 3336 aa14.34□□□□□ -0.11
RTN3-210ENST00000540798 GOLGA8MH3BSY2 632 aa14.34□□□□□ -0.11
RTN3-210ENST00000540798 NRLP54845 237 aa14.34□□□□□ -0.11
RTN3-210ENST00000540798 ADCY1Q08828 1119 aa14.34□□□□□ -0.11
RTN3-210ENST00000540798 CACNA2D3Q8IZS8 1091 aa14.34□□□□□ -0.11
RTN3-210ENST00000540798 ATP11CQ8NB49 1132 aa14.34□□□□□ -0.11
RTN3-210ENST00000540798 TRAF3IP1Q8TDR0 691 aaPredicted RBP14.34□□□□□ -0.11
RTN3-210ENST00000540798 WNT8BQ93098 351 aa14.34□□□□□ -0.11
RTN3-210ENST00000540798 NT5C3BQ969T7 300 aa14.34□□□□□ -0.11
RTN3-210ENST00000540798 CXorf56Q9H5V9 222 aa14.34□□□□□ -0.11
RTN3-210ENST00000540798 NRDE2Q9H7Z3 1164 aa14.34□□□□□ -0.11
RTN3-210ENST00000540798 TBK1Q9UHD2 729 aa14.34□□□□□ -0.11
RTN3-210ENST00000540798 SUFUQ9UMX1 484 aa14.34□□□□□ -0.11
RTN3-210ENST00000540798 USP3Q9Y6I4 520 aa14.34□□□□□ -0.11
RTN3-210ENST00000540798 CASP8AP2Q9UKL3 1982 aa14.33□□□□□ -0.11
RTN3-210ENST00000540798 PRPF4O43172 522 aaKnown RBP eCLIP14.33□□□□□ -0.113e-8■□□□□ 10.6
RTN3-210ENST00000540798 CPP00450 1065 aa14.33□□□□□ -0.11
RTN3-210ENST00000540798 LCP1P13796 627 aa14.33□□□□□ -0.11
RTN3-210ENST00000540798 RNASELQ05823 741 aaKnown RBP14.33□□□□□ -0.11
RTN3-210ENST00000540798 EFHC1Q5JVL4 640 aa14.33□□□□□ -0.11
RTN3-210ENST00000540798 OTUD1Q5VV17 481 aaPredicted RBP14.33□□□□□ -0.11
RTN3-210ENST00000540798 GDF6Q6KF10 455 aaPredicted RBP14.33□□□□□ -0.11
RTN3-210ENST00000540798 C1orf228Q6PIY5 440 aa14.33□□□□□ -0.11
RTN3-210ENST00000540798 ZC3H18Q86VM9 953 aaKnown RBP14.33□□□□□ -0.11
RTN3-210ENST00000540798 PAK5Q9P286 719 aa14.33□□□□□ -0.11
RTN3-210ENST00000540798 DAB1O75553 588 aa14.33□□□□□ -0.12
RTN3-210ENST00000540798 TOMM70O94826 608 aa14.33□□□□□ -0.12
RTN3-210ENST00000540798 OAS1P00973 400 aaKnown RBP14.33□□□□□ -0.12
RTN3-210ENST00000540798 MATKP42679 507 aa14.33□□□□□ -0.12
RTN3-210ENST00000540798 BCAR1P56945 870 aa14.33□□□□□ -0.12
RTN3-210ENST00000540798 XRCC4Q13426 336 aa14.33□□□□□ -0.12
RTN3-210ENST00000540798 TMED2Q15363 201 aa14.33□□□□□ -0.12
RTN3-210ENST00000540798 NBPF20Q3BBV1 942 aa14.33□□□□□ -0.12
RTN3-210ENST00000540798 HP1BP3Q5SSJ5 553 aaPredicted RBP14.33□□□□□ -0.12
RTN3-210ENST00000540798 SERINC5Q86VE9 423 aa14.33□□□□□ -0.12
RTN3-210ENST00000540798 ZFP42Q96MM3 310 aa14.33□□□□□ -0.12
RTN3-210ENST00000540798 ACSS3Q9H6R3 686 aa14.33□□□□□ -0.12
RTN3-210ENST00000540798 VPS37BQ9H9H4 285 aa14.33□□□□□ -0.12
RTN3-210ENST00000540798 SLC38A7Q9NVC3 462 aa14.33□□□□□ -0.12
RTN3-210ENST00000540798 FASTKD2Q9NYY8 710 aaKnown RBP eCLIP14.33□□□□□ -0.12
RTN3-210ENST00000540798 CYB561D2O14569 222 aa14.32□□□□□ -0.12
RTN3-210ENST00000540798 CHRNA1P02708 482 aa14.32□□□□□ -0.12
RTN3-210ENST00000540798 C6orf222P0C671 652 aaPredicted RBP14.32□□□□□ -0.12
RTN3-210ENST00000540798 PTPN1P18031 435 aaKnown RBP14.32□□□□□ -0.12
RTN3-210ENST00000540798 CYP2F1P24903 491 aa14.32□□□□□ -0.12
RTN3-210ENST00000540798 ATXN1P54253 815 aaKnown RBP14.32□□□□□ -0.12
RTN3-210ENST00000540798 ITIH4Q14624 930 aa14.32□□□□□ -0.12
RTN3-210ENST00000540798 KIAA0319Q5VV43 1072 aa14.32□□□□□ -0.12
RTN3-210ENST00000540798 PIGZQ86VD9 579 aa14.32□□□□□ -0.12
RTN3-210ENST00000540798 ANKMY2Q8IV38 441 aa14.32□□□□□ -0.12
RTN3-210ENST00000540798 PSTKQ8IV42 348 aaKnown RBP14.32□□□□□ -0.12
RTN3-210ENST00000540798 SRRM1Q8IYB3 904 aaKnown RBP14.32□□□□□ -0.12
RTN3-210ENST00000540798 DENND1AQ8TEH3 1009 aa14.32□□□□□ -0.12
RTN3-210ENST00000540798 PYROXD1Q8WU10 500 aa14.32□□□□□ -0.12
RTN3-210ENST00000540798 KCTD15Q96SI1 283 aaPredicted RBP14.32□□□□□ -0.12
RTN3-210ENST00000540798 FAM105AQ9NUU6 356 aa14.32□□□□□ -0.12
RTN3-210ENST00000540798 SENP1Q9P0U3 644 aa14.32□□□□□ -0.12
RTN3-210ENST00000540798 ST3GAL5Q9UNP4 418 aa14.32□□□□□ -0.12
RTN3-210ENST00000540798 RASA4BC9J798 803 aa14.32□□□□□ -0.12
RTN3-210ENST00000540798 RASA4O43374 803 aa14.32□□□□□ -0.12
RTN3-210ENST00000540798 ATP2C2O75185 946 aa14.32□□□□□ -0.12
RTN3-210ENST00000540798 KIAA0754O94854 1291 aa14.32□□□□□ -0.12
RTN3-210ENST00000540798 IGFBP6P24592 240 aaPredicted RBP14.32□□□□□ -0.12
RTN3-210ENST00000540798 PHBP35232 272 aa14.32□□□□□ -0.12
RTN3-210ENST00000540798 IFT88Q13099 833 aa14.32□□□□□ -0.12
RTN3-210ENST00000540798 SLC25A52Q3SY17 297 aa14.32□□□□□ -0.12
RTN3-210ENST00000540798 MRPL10Q7Z7H8 261 aaKnown RBP14.32□□□□□ -0.12
RTN3-210ENST00000540798 PDIK1LQ8N165 341 aa14.32□□□□□ -0.12
RTN3-210ENST00000540798 FBXO36Q8NEA4 188 aa14.32□□□□□ -0.12
RTN3-210ENST00000540798 PSMC3IPQ9P2W1 217 aaPredicted RBP14.32□□□□□ -0.12
RTN3-210ENST00000540798 AP4E1Q9UPM8 1137 aa14.32□□□□□ -0.12
RTN3-210ENST00000540798 GTF3C5Q9Y5Q8 519 aaPredicted RBP14.32□□□□□ -0.12
RTN3-210ENST00000540798 TEX264Q9Y6I9 313 aa14.32□□□□□ -0.12
RTN3-210ENST00000540798 MEIS3P2A8K0S8 358 aa14.32□□□□□ -0.12
RTN3-210ENST00000540798 H7C0C1 242 aa14.32□□□□□ -0.12
RTN3-210ENST00000540798 FSBPO95073 299 aa14.32□□□□□ -0.12
RTN3-210ENST00000540798 ZFXP17010 805 aaPredicted RBP14.32□□□□□ -0.12
RTN3-210ENST00000540798 NPR3P17342 541 aa14.32□□□□□ -0.12
RTN3-210ENST00000540798 ATP5OP48047 213 aa14.32□□□□□ -0.12
RTN3-210ENST00000540798 TM4SF4P48230 202 aa14.32□□□□□ -0.12
RTN3-210ENST00000540798 NR2C2P49116 596 aa14.32□□□□□ -0.12
RTN3-210ENST00000540798 GEMIN4P57678 1058 aaKnown RBP14.32□□□□□ -0.12
RTN3-210ENST00000540798 CCDC185Q8N715 623 aa14.32□□□□□ -0.12
RTN3-210ENST00000540798 MZB1Q8WU39 189 aa14.32□□□□□ -0.12
RTN3-210ENST00000540798 TRIB2Q92519 343 aa14.32□□□□□ -0.12
RTN3-210ENST00000540798 FRMD8Q9BZ67 464 aaPredicted RBP14.32□□□□□ -0.12
RTN3-210ENST00000540798 TSPYL2Q9H2G4 693 aaPredicted RBP14.32□□□□□ -0.12
RTN3-210ENST00000540798 PRDM16Q9HAZ2 1276 aa14.32□□□□□ -0.12
RTN3-210ENST00000540798 SSU72Q9NP77 194 aaKnown RBP14.32□□□□□ -0.12
RTN3-210ENST00000540798 RCOR3Q9P2K3 495 aaPredicted RBP14.32□□□□□ -0.12
RTN3-210ENST00000540798 ZNF638Q14966 1978 aaKnown RBP14.31□□□□□ -0.12
RTN3-210ENST00000540798 M0QZ92 97 aa14.31□□□□□ -0.12
RTN3-210ENST00000540798 RBL1P28749 1068 aa14.31□□□□□ -0.12
RTN3-210ENST00000540798 IFNAR2P48551 515 aa14.31□□□□□ -0.12
RTN3-210ENST00000540798 BASP1P80723 227 aaKnown RBP14.31□□□□□ -0.12
RTN3-210ENST00000540798 LRRC14Q15048 493 aa14.31□□□□□ -0.12
RTN3-210ENST00000540798 GNASQ5JWF2 1037 aa14.31□□□□□ -0.12
RTN3-210ENST00000540798 WSCD1Q658N2 575 aa14.31□□□□□ -0.12
Retrieved 100 of 20,778 RNA–protein pairs in 49.5 ms