RNA–Protein interactions for RNA: ENST00000540797.5

USP3-204, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 2 BASIC

Gene USP3, Length 5,474 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-204ENST00000540797 USP17L7P0C7H9 530 aa14.57□□□□□ -0.08
USP3-204ENST00000540797 PTPN1P18031 435 aaKnown RBP14.57□□□□□ -0.08
USP3-204ENST00000540797 CTNNB1P35222 781 aa14.57□□□□□ -0.08
USP3-204ENST00000540797 RENBPP51606 427 aa14.57□□□□□ -0.08
USP3-204ENST00000540797 SLC6A3Q01959 620 aa14.57□□□□□ -0.08
USP3-204ENST00000540797 TMEM161BQ8NDZ6 487 aa14.57□□□□□ -0.08
USP3-204ENST00000540797 PPTC7Q8NI37 304 aa14.57□□□□□ -0.08
USP3-204ENST00000540797 KIF17Q9P2E2 1029 aa14.57□□□□□ -0.08
USP3-204ENST00000540797 SF3B1O75533 1304 aaKnown RBP eCLIP14.57□□□□□ -0.081e-6■■■■■ 175.4
USP3-204ENST00000540797 H0Y3Z8 333 aa14.57□□□□□ -0.08
USP3-204ENST00000540797 GRK4P32298 578 aa14.57□□□□□ -0.08
USP3-204ENST00000540797 CCDC149Q6ZUS6 474 aa14.57□□□□□ -0.08
USP3-204ENST00000540797 DNAAF5Q86Y56 855 aa14.57□□□□□ -0.08
USP3-204ENST00000540797 LGI2Q8N0V4 545 aa14.57□□□□□ -0.08
USP3-204ENST00000540797 SH2D3CQ8N5H7 860 aa14.57□□□□□ -0.08
USP3-204ENST00000540797 SGF29Q96ES7 293 aa14.57□□□□□ -0.08
USP3-204ENST00000540797 ZCCHC17Q9NP64 241 aaKnown RBP14.57□□□□□ -0.08
USP3-204ENST00000540797 RNF103-CHMP3A0A140T963 221 aa14.57□□□□□ -0.08
USP3-204ENST00000540797 C5orf58C9J3I9 102 aa14.57□□□□□ -0.08
USP3-204ENST00000540797 CLASP2O75122 1294 aaKnown RBP14.57□□□□□ -0.08
USP3-204ENST00000540797 PCDH8O95206 1070 aa14.57□□□□□ -0.08
USP3-204ENST00000540797 RPSAP08865 295 aaKnown RBP14.57□□□□□ -0.08
USP3-204ENST00000540797 HDAC4P56524 1084 aa14.57□□□□□ -0.08
USP3-204ENST00000540797 CBWD6Q4V339 395 aa14.57□□□□□ -0.08
USP3-204ENST00000540797 PABPC1LQ4VXU2 614 aaKnown RBP14.57□□□□□ -0.08
USP3-204ENST00000540797 CBWD3Q5JTY5 395 aa14.57□□□□□ -0.08
USP3-204ENST00000540797 CBWD5Q5RIA9 395 aa14.57□□□□□ -0.08
USP3-204ENST00000540797 RGS9BPQ6ZS82 235 aa14.57□□□□□ -0.08
USP3-204ENST00000540797 ACO2Q99798 780 aaKnown RBP14.57□□□□□ -0.08
USP3-204ENST00000540797 CLPBQ9H078 707 aa14.57□□□□□ -0.08
USP3-204ENST00000540797 CDT1Q9H211 546 aa14.57□□□□□ -0.08
USP3-204ENST00000540797 VIPAS39Q9H9C1 493 aa14.57□□□□□ -0.08
USP3-204ENST00000540797 ETNK1Q9HBU6 452 aa14.57□□□□□ -0.08
USP3-204ENST00000540797 DRG1Q9Y295 367 aaKnown RBP14.57□□□□□ -0.08
USP3-204ENST00000540797 NFICP08651 508 aa14.56□□□□□ -0.08
USP3-204ENST00000540797 PTPN7P35236 360 aa14.56□□□□□ -0.08
USP3-204ENST00000540797 SLC29A2Q14542 456 aa14.56□□□□□ -0.08
USP3-204ENST00000540797 LPPQ93052 612 aa14.56□□□□□ -0.08
USP3-204ENST00000540797 TMA16Q96EY4 203 aaKnown RBP14.56□□□□□ -0.08
USP3-204ENST00000540797 FMN2Q9NZ56 1722 aa14.56□□□□□ -0.08
USP3-204ENST00000540797 UNC93AQ86WB7 457 aa14.56□□□□□ -0.08
USP3-204ENST00000540797 FBXO36Q8NEA4 188 aa14.56□□□□□ -0.08
USP3-204ENST00000540797 CSGALNACT1Q8TDX6 532 aa14.56□□□□□ -0.08
USP3-204ENST00000540797 ULBP1Q9BZM6 244 aa14.56□□□□□ -0.08
USP3-204ENST00000540797 UBE2OQ9C0C9 1292 aaKnown RBP14.56□□□□□ -0.08
USP3-204ENST00000540797 TBC1D13Q9NVG8 400 aa14.56□□□□□ -0.08
USP3-204ENST00000540797 PSD3Q9NYI0 1048 aa14.56□□□□□ -0.08
USP3-204ENST00000540797 H2AFYO75367 372 aaKnown RBP14.56□□□□□ -0.08
USP3-204ENST00000540797 LTFP02788 710 aa14.56□□□□□ -0.08
USP3-204ENST00000540797 FGRP09769 529 aa14.56□□□□□ -0.08
USP3-204ENST00000540797 AGAP9Q5VTM2 703 aa14.56□□□□□ -0.08
USP3-204ENST00000540797 C11orf63Q6NUN7 778 aa14.56□□□□□ -0.08
USP3-204ENST00000540797 LBX2Q6XYB7 198 aa14.56□□□□□ -0.08
USP3-204ENST00000540797 IL17RAQ96F46 866 aa14.56□□□□□ -0.08
USP3-204ENST00000540797 POPDC2Q9HBU9 364 aa14.56□□□□□ -0.08
USP3-204ENST00000540797 NPHS2Q9NP85 383 aa14.56□□□□□ -0.08
USP3-204ENST00000540797 ATRNO75882 1429 aa14.56□□□□□ -0.08
USP3-204ENST00000540797 FAM95CA0A1B0GW59 222 aa14.56□□□□□ -0.08
USP3-204ENST00000540797 ALDH1A2O94788 518 aa14.56□□□□□ -0.08
USP3-204ENST00000540797 FARP2O94887 1054 aaPredicted RBP14.56□□□□□ -0.08
USP3-204ENST00000540797 PBLDP30039 288 aaPredicted RBP14.56□□□□□ -0.08
USP3-204ENST00000540797 PREPLQ4J6C6 727 aaPredicted RBP14.56□□□□□ -0.08
USP3-204ENST00000540797 AGBL2Q5U5Z8 902 aa14.56□□□□□ -0.08
USP3-204ENST00000540797 LRP10Q7Z4F1 713 aa14.56□□□□□ -0.08
USP3-204ENST00000540797 LRRC6Q86X45 466 aa14.56□□□□□ -0.08
USP3-204ENST00000540797 NKX2-3Q8TAU0 364 aa14.56□□□□□ -0.08
USP3-204ENST00000540797 CD99L2Q8TCZ2 262 aa14.56□□□□□ -0.08
USP3-204ENST00000540797 OTUB1Q96FW1 271 aaPredicted RBP14.56□□□□□ -0.08
USP3-204ENST00000540797 NAT9Q9BTE0 207 aa14.56□□□□□ -0.08
USP3-204ENST00000540797 DCLK3Q9C098 648 aa14.56□□□□□ -0.08
USP3-204ENST00000540797 LACRTQ9GZZ8 138 aa14.56□□□□□ -0.08
USP3-204ENST00000540797 RIC8BQ9NVN3 520 aa14.56□□□□□ -0.08
USP3-204ENST00000540797 UBP1Q9NZI7 540 aa14.56□□□□□ -0.08
USP3-204ENST00000540797 BAZ2BQ9UIF8 2168 aaKnown RBP14.56□□□□□ -0.08
USP3-204ENST00000540797 PHLPP1O60346 1717 aa14.56□□□□□ -0.08
USP3-204ENST00000540797 SERPINF2P08697 491 aa14.55□□□□□ -0.08
USP3-204ENST00000540797 MDH1P40925 334 aaKnown RBP14.55□□□□□ -0.08
USP3-204ENST00000540797 CASP5P51878 434 aa14.55□□□□□ -0.08
USP3-204ENST00000540797 PTENP60484 403 aa14.55□□□□□ -0.08
USP3-204ENST00000540797 TMEM259Q4ZIN3 620 aa14.55□□□□□ -0.08
USP3-204ENST00000540797 CES5AQ6NT32 575 aa14.55□□□□□ -0.08
USP3-204ENST00000540797 ILDR2Q71H61 639 aa14.55□□□□□ -0.08
USP3-204ENST00000540797 EFL1Q7Z2Z2 1120 aaKnown RBP14.55□□□□□ -0.08
USP3-204ENST00000540797 COLGALT1Q8NBJ5 622 aa14.55□□□□□ -0.08
USP3-204ENST00000540797 MTMR14Q8NCE2 650 aa14.55□□□□□ -0.08
USP3-204ENST00000540797 KAT2BQ92831 832 aa14.55□□□□□ -0.08
USP3-204ENST00000540797 IARS2Q9NSE4 1012 aaKnown RBP14.55□□□□□ -0.08
USP3-204ENST00000540797 CCDC157Q569K6 752 aa14.55□□□□□ -0.08
USP3-204ENST00000540797 PPP4R4Q6NUP7 873 aa14.55□□□□□ -0.08
USP3-204ENST00000540797 LPCAT1Q8NF37 534 aa14.55□□□□□ -0.08
USP3-204ENST00000540797 ETNPPLQ8TBG4 499 aa14.55□□□□□ -0.08
USP3-204ENST00000540797 ACTL9Q8TC94 416 aa14.55□□□□□ -0.08
USP3-204ENST00000540797 ANLNQ9NQW6 1124 aa14.55□□□□□ -0.08
USP3-204ENST00000540797 CCNG2Q16589 344 aa14.55□□□□□ -0.08
USP3-204ENST00000540797 LVRNQ6Q4G3 990 aa14.55□□□□□ -0.08
USP3-204ENST00000540797 FAM167BQ9BTA0 163 aa14.55□□□□□ -0.08
USP3-204ENST00000540797 ECT2Q9H8V3 914 aa14.55□□□□□ -0.08
USP3-204ENST00000540797 CDYLQ9Y232 598 aa14.55□□□□□ -0.08
USP3-204ENST00000540797 CCDC85CA6NKD9 419 aa14.55□□□□□ -0.08
USP3-204ENST00000540797 E5RJQ4 531 aa14.55□□□□□ -0.08
Retrieved 100 of 20,778 RNA–protein pairs in 18 ms