RNA–Protein interactions for RNA: ENST00000539982.5

CLSTN3-209, Transcript of calsyntenin 3, humanhuman

TSL 4

Gene CLSTN3, Length 570 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLSTN3-209ENST00000539982 PRRT4C9JH25 899 aa12.33□□□□□ -0.44
CLSTN3-209ENST00000539982 CLDN5O00501 218 aa12.33□□□□□ -0.44
CLSTN3-209ENST00000539982 CACNG3O60359 315 aa12.33□□□□□ -0.44
CLSTN3-209ENST00000539982 PRPF6O94906 941 aaKnown RBP12.33□□□□□ -0.44
CLSTN3-209ENST00000539982 DKK1O94907 266 aa12.33□□□□□ -0.44
CLSTN3-209ENST00000539982 CST3P01034 146 aaPredicted RBP12.33□□□□□ -0.44
CLSTN3-209ENST00000539982 CYP4F3Q08477 520 aa12.33□□□□□ -0.44
CLSTN3-209ENST00000539982 IL27RAQ6UWB1 636 aa12.33□□□□□ -0.44
CLSTN3-209ENST00000539982 HTR3DQ70Z44 454 aa12.33□□□□□ -0.44
CLSTN3-209ENST00000539982 SV2BQ7L1I2 683 aa12.33□□□□□ -0.44
CLSTN3-209ENST00000539982 TRAPPC11Q7Z392 1133 aa12.33□□□□□ -0.44
CLSTN3-209ENST00000539982 SCUBE3Q8IX30 993 aa12.33□□□□□ -0.44
CLSTN3-209ENST00000539982 CADM4Q8NFZ8 388 aa12.33□□□□□ -0.44
CLSTN3-209ENST00000539982 SCAMP5Q8TAC9 235 aa12.33□□□□□ -0.44
CLSTN3-209ENST00000539982 BAHD1Q8TBE0 780 aaPredicted RBP12.33□□□□□ -0.44
CLSTN3-209ENST00000539982 WBP2Q969T9 261 aa12.33□□□□□ -0.44
CLSTN3-209ENST00000539982 EPSTI1Q96J88 318 aa12.33□□□□□ -0.44
CLSTN3-209ENST00000539982 KCNK16Q96T55 309 aa12.33□□□□□ -0.44
CLSTN3-209ENST00000539982 CDC6Q99741 560 aa12.33□□□□□ -0.44
CLSTN3-209ENST00000539982 GAREM1Q9H706 876 aa12.33□□□□□ -0.44
CLSTN3-209ENST00000539982 CCSER2Q9H7U1 834 aa12.33□□□□□ -0.44
CLSTN3-209ENST00000539982 IL21RQ9HBE5 538 aa12.33□□□□□ -0.44
CLSTN3-209ENST00000539982 ITM2CQ9NQX7 267 aa12.33□□□□□ -0.44
CLSTN3-209ENST00000539982 TM7SF3Q9NS93 570 aa12.33□□□□□ -0.44
CLSTN3-209ENST00000539982 TOR4AQ9NXH8 423 aa12.33□□□□□ -0.44
CLSTN3-209ENST00000539982 CACNA2D2Q9NY47 1150 aa12.33□□□□□ -0.44
CLSTN3-209ENST00000539982 WSB2Q9NYS7 404 aaPredicted RBP12.33□□□□□ -0.44
CLSTN3-209ENST00000539982 IL37Q9NZH6 218 aa12.33□□□□□ -0.44
CLSTN3-209ENST00000539982 WDR35Q9P2L0 1181 aa12.33□□□□□ -0.44
CLSTN3-209ENST00000539982 CCDC39Q9UFE4 941 aa12.33□□□□□ -0.44
CLSTN3-209ENST00000539982 RAD54BQ9Y620 910 aa12.33□□□□□ -0.44
CLSTN3-209ENST00000539982 ASXL3Q9C0F0 2248 aa12.33□□□□□ -0.44
CLSTN3-209ENST00000539982 ASH1LQ9NR48 2969 aaKnown RBP12.32□□□□□ -0.44
CLSTN3-209ENST00000539982 A0A087WV48 116 aa12.32□□□□□ -0.44
CLSTN3-209ENST00000539982 TRABD2BA6NFA1 517 aa12.32□□□□□ -0.44
CLSTN3-209ENST00000539982 MEI4A8MW99 385 aa12.32□□□□□ -0.44
CLSTN3-209ENST00000539982 A8MXQ7 604 aa12.32□□□□□ -0.44
CLSTN3-209ENST00000539982 WASH3PC4AMC7 463 aa12.32□□□□□ -0.44
CLSTN3-209ENST00000539982 NEDD8-MDP1E9PL57 170 aa12.32□□□□□ -0.44
CLSTN3-209ENST00000539982 CER1O95813 267 aa12.32□□□□□ -0.44
CLSTN3-209ENST00000539982 CISD3P0C7P0 127 aa12.32□□□□□ -0.44
CLSTN3-209ENST00000539982 ATXN1LP0C7T5 689 aaKnown RBP12.32□□□□□ -0.44
CLSTN3-209ENST00000539982 ZDHHC11BP0C7U3 371 aa12.32□□□□□ -0.44
CLSTN3-209ENST00000539982 TYRP14679 529 aa12.32□□□□□ -0.44
CLSTN3-209ENST00000539982 KIAA1324Q6UXG2 1013 aaKnown RBP12.32□□□□□ -0.44
CLSTN3-209ENST00000539982 USP49Q70CQ1 688 aa12.32□□□□□ -0.44
CLSTN3-209ENST00000539982 WDR49Q8IV35 697 aa12.32□□□□□ -0.44
CLSTN3-209ENST00000539982 GALNT15Q8N3T1 639 aa12.32□□□□□ -0.44
CLSTN3-209ENST00000539982 ADAM32Q8TC27 787 aa12.32□□□□□ -0.44
CLSTN3-209ENST00000539982 RHBDD1Q8TEB9 315 aa12.32□□□□□ -0.44
CLSTN3-209ENST00000539982 TOE1Q96GM8 510 aaKnown RBP12.32□□□□□ -0.44
CLSTN3-209ENST00000539982 KIF2CQ99661 725 aa12.32□□□□□ -0.44
CLSTN3-209ENST00000539982 BBS2Q9BXC9 721 aa12.32□□□□□ -0.44
CLSTN3-209ENST00000539982 NACA2Q9H009 215 aa12.32□□□□□ -0.44
CLSTN3-209ENST00000539982 MIR1-1HGQ9H1L0 117 aa12.32□□□□□ -0.44
CLSTN3-209ENST00000539982 DPEP3Q9H4B8 488 aa12.32□□□□□ -0.44
CLSTN3-209ENST00000539982 COMMD8Q9NX08 183 aa12.32□□□□□ -0.44
CLSTN3-209ENST00000539982 MARK1Q9P0L2 795 aa12.32□□□□□ -0.44
CLSTN3-209ENST00000539982 PCDHGB2Q9Y5G2 931 aa12.32□□□□□ -0.44
CLSTN3-209ENST00000539982 FAM92AA1XBS5 289 aa12.31□□□□□ -0.44
CLSTN3-209ENST00000539982 METTL12A8MUP2 240 aa12.31□□□□□ -0.44
CLSTN3-209ENST00000539982 BCAT2O15382 392 aaPredicted RBP12.31□□□□□ -0.44
CLSTN3-209ENST00000539982 GREM1O60565 184 aa12.31□□□□□ -0.44
CLSTN3-209ENST00000539982 CILPO75339 1184 aa12.31□□□□□ -0.44
CLSTN3-209ENST00000539982 IRF1P10914 325 aa12.31□□□□□ -0.44
CLSTN3-209ENST00000539982 NCAM1P13591 858 aa12.31□□□□□ -0.44
CLSTN3-209ENST00000539982 IDEP14735 1019 aa12.31□□□□□ -0.44
CLSTN3-209ENST00000539982 GJB2P29033 226 aa12.31□□□□□ -0.44
CLSTN3-209ENST00000539982 MATKP42679 507 aa12.31□□□□□ -0.44
CLSTN3-209ENST00000539982 DGKGP49619 791 aa12.31□□□□□ -0.44
CLSTN3-209ENST00000539982 TNNC1P63316 161 aa12.31□□□□□ -0.44
CLSTN3-209ENST00000539982 C19orf57Q0VDD7 668 aa12.31□□□□□ -0.44
CLSTN3-209ENST00000539982 CAMK2BQ13554 666 aa12.31□□□□□ -0.44
CLSTN3-209ENST00000539982 SF3A1Q15459 793 aaKnown RBP12.31□□□□□ -0.44
CLSTN3-209ENST00000539982 HLA-BQ31612 363 aa12.31□□□□□ -0.44
CLSTN3-209ENST00000539982 WDR72Q3MJ13 1102 aa12.31□□□□□ -0.44
CLSTN3-209ENST00000539982 RRAGBQ5VZM2 374 aa12.31□□□□□ -0.44
CLSTN3-209ENST00000539982 CBWD2Q8IUF1 395 aa12.31□□□□□ -0.44
CLSTN3-209ENST00000539982 ZCCHC9Q8N567 271 aaKnown RBP12.31□□□□□ -0.44
CLSTN3-209ENST00000539982 B3GALNT2Q8NCR0 500 aa12.31□□□□□ -0.44
CLSTN3-209ENST00000539982 GPR174Q9BXC1 333 aa12.31□□□□□ -0.44
CLSTN3-209ENST00000539982 KLF16Q9BXK1 252 aaPredicted RBP12.31□□□□□ -0.44
CLSTN3-209ENST00000539982 FGFBP2Q9BYJ0 223 aa12.31□□□□□ -0.44
CLSTN3-209ENST00000539982 PRDM16Q9HAZ2 1276 aa12.31□□□□□ -0.44
CLSTN3-209ENST00000539982 KIAA1586Q9HCI6 787 aa12.31□□□□□ -0.44
CLSTN3-209ENST00000539982 USP36Q9P275 1121 aaKnown RBP12.31□□□□□ -0.44
CLSTN3-209ENST00000539982 STON1Q9Y6Q2 735 aa12.31□□□□□ -0.44
CLSTN3-209ENST00000539982 BPTFQ12830 3046 aa12.31□□□□□ -0.44
CLSTN3-209ENST00000539982 FRMD3A2A2Y4 597 aa12.3□□□□□ -0.44
CLSTN3-209ENST00000539982 FLRT2O43155 660 aa12.3□□□□□ -0.44
CLSTN3-209ENST00000539982 OXTRP30559 389 aa12.3□□□□□ -0.44
CLSTN3-209ENST00000539982 ZNF132P52740 706 aa12.3□□□□□ -0.44
CLSTN3-209ENST00000539982 SLC5A3P53794 718 aa12.3□□□□□ -0.44
CLSTN3-209ENST00000539982 BNC1Q01954 994 aa12.3□□□□□ -0.44
CLSTN3-209ENST00000539982 STARD3Q14849 445 aa12.3□□□□□ -0.44
CLSTN3-209ENST00000539982 SUZ12Q15022 739 aaKnown RBP12.3□□□□□ -0.44
CLSTN3-209ENST00000539982 FUT11Q495W5 492 aa12.3□□□□□ -0.44
CLSTN3-209ENST00000539982 DCAF12L1Q5VU92 463 aa12.3□□□□□ -0.44
CLSTN3-209ENST00000539982 TPGS1Q6ZTW0 290 aa12.3□□□□□ -0.44
CLSTN3-209ENST00000539982 MARCH9Q86YJ5 346 aa12.3□□□□□ -0.44
Retrieved 100 of 20,778 RNA–protein pairs in 28.6 ms