RNA–Protein interactions for RNA: ENST00000538995.1

RTN3-209, Transcript of reticulon 3, humanhuman

TSL 2

Gene RTN3, Length 814 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTN3-209ENST00000538995 STILQ15468 1287 aa12.16□□□□□ -0.46
RTN3-209ENST00000538995 GOLGA7BQ2TAP0 167 aa12.16□□□□□ -0.46
RTN3-209ENST00000538995 PREPLQ4J6C6 727 aaPredicted RBP12.16□□□□□ -0.46
RTN3-209ENST00000538995 C10orf120Q5SQS8 335 aa12.16□□□□□ -0.46
RTN3-209ENST00000538995 LY6G5CQ5SRR4 150 aa12.16□□□□□ -0.46
RTN3-209ENST00000538995 SMYD5Q6GMV2 418 aa12.16□□□□□ -0.46
RTN3-209ENST00000538995 PKN3Q6P5Z2 889 aa12.16□□□□□ -0.46
RTN3-209ENST00000538995 RHBDF2Q6PJF5 856 aa12.16□□□□□ -0.46
RTN3-209ENST00000538995 TMEM270Q6UE05 265 aa12.16□□□□□ -0.46
RTN3-209ENST00000538995 SYT13Q7L8C5 426 aa12.16□□□□□ -0.46
RTN3-209ENST00000538995 SCD5Q86SK9 330 aa12.16□□□□□ -0.46
RTN3-209ENST00000538995 BBS7Q8IWZ6 715 aa12.16□□□□□ -0.46
RTN3-209ENST00000538995 PPM1KQ8N3J5 372 aa12.16□□□□□ -0.46
RTN3-209ENST00000538995 CAMKK1Q8N5S9 505 aa12.16□□□□□ -0.46
RTN3-209ENST00000538995 EZH1Q92800 747 aaPredicted RBP12.16□□□□□ -0.46
RTN3-209ENST00000538995 C2orf42Q9NWW7 574 aa12.16□□□□□ -0.46
RTN3-209ENST00000538995 RAB23Q9ULC3 237 aa12.16□□□□□ -0.46
RTN3-209ENST00000538995 SLC8A2Q9UPR5 921 aa12.16□□□□□ -0.46
RTN3-209ENST00000538995 TBX18O95935 607 aa12.15□□□□□ -0.46
RTN3-209ENST00000538995 ZBED1O96006 694 aa12.15□□□□□ -0.46
RTN3-209ENST00000538995 IRF1P10914 325 aa12.15□□□□□ -0.46
RTN3-209ENST00000538995 FNTBP49356 437 aa12.15□□□□□ -0.46
RTN3-209ENST00000538995 TKTL1P51854 596 aa12.15□□□□□ -0.46
RTN3-209ENST00000538995 PDE4CQ08493 712 aa12.15□□□□□ -0.46
RTN3-209ENST00000538995 HSF5Q4G112 596 aaPredicted RBP12.15□□□□□ -0.46
RTN3-209ENST00000538995 PKDCCQ504Y2 493 aa12.15□□□□□ -0.46
RTN3-209ENST00000538995 BTBD8Q5XKL5 378 aa12.15□□□□□ -0.46
RTN3-209ENST00000538995 PM20D1Q6GTS8 502 aa12.15□□□□□ -0.46
RTN3-209ENST00000538995 LCLAT1Q6UWP7 414 aa12.15□□□□□ -0.46
RTN3-209ENST00000538995 ETFBKMTQ8IXQ9 262 aa12.15□□□□□ -0.46
RTN3-209ENST00000538995 SCML4Q8N228 414 aa12.15□□□□□ -0.46
RTN3-209ENST00000538995 GPR161Q8N6U8 529 aaKnown RBP12.15□□□□□ -0.46
RTN3-209ENST00000538995 EHBP1Q8NDI1 1231 aa12.15□□□□□ -0.46
RTN3-209ENST00000538995 RPLP0P6Q8NHW5 317 aa12.15□□□□□ -0.46
RTN3-209ENST00000538995 KCTD13Q8WZ19 329 aa12.15□□□□□ -0.46
RTN3-209ENST00000538995 FAM81BQ96LP2 452 aa12.15□□□□□ -0.46
RTN3-209ENST00000538995 PNKPQ96T60 521 aa12.15□□□□□ -0.46
RTN3-209ENST00000538995 HINFPQ9BQA5 517 aa12.15□□□□□ -0.46
RTN3-209ENST00000538995 SPHK2Q9NRA0 654 aa12.15□□□□□ -0.46
RTN3-209ENST00000538995 MARK1Q9P0L2 795 aa12.15□□□□□ -0.46
RTN3-209ENST00000538995 NCDNQ9UBB6 729 aa12.15□□□□□ -0.46
RTN3-209ENST00000538995 A0A0A0MRY4 1105 aa12.14□□□□□ -0.47
RTN3-209ENST00000538995 K7EQS6 105 aa12.14□□□□□ -0.47
RTN3-209ENST00000538995 SCAMP3O14828 347 aaKnown RBP12.14□□□□□ -0.47
RTN3-209ENST00000538995 KAT7O95251 611 aa12.14□□□□□ -0.47
RTN3-209ENST00000538995 APODP05090 189 aa12.14□□□□□ -0.47
RTN3-209ENST00000538995 GRIA2P42262 883 aa12.14□□□□□ -0.47
RTN3-209ENST00000538995 ZNF132P52740 706 aa12.14□□□□□ -0.47
RTN3-209ENST00000538995 MRPS21P82921 87 aaKnown RBP12.14□□□□□ -0.47
RTN3-209ENST00000538995 COG7P83436 770 aa12.14□□□□□ -0.47
RTN3-209ENST00000538995 DMWDQ09019 674 aa12.14□□□□□ -0.47
RTN3-209ENST00000538995 CNGA2Q16280 664 aa12.14□□□□□ -0.47
RTN3-209ENST00000538995 MEA1Q16626 185 aa12.14□□□□□ -0.47
RTN3-209ENST00000538995 LAIR1Q6GTX8 287 aa12.14□□□□□ -0.47
RTN3-209ENST00000538995 Q6ZNB5 142 aa12.14□□□□□ -0.47
RTN3-209ENST00000538995 ENOSF1Q7L5Y1 443 aa12.14□□□□□ -0.47
RTN3-209ENST00000538995 RBBP8NLQ8NC74 664 aaPredicted RBP12.14□□□□□ -0.47
RTN3-209ENST00000538995 USP33Q8TEY7 942 aa12.14□□□□□ -0.47
RTN3-209ENST00000538995 CNOT6LQ96LI5 555 aaKnown RBP12.14□□□□□ -0.47
RTN3-209ENST00000538995 INTS2Q9H0H0 1204 aaKnown RBP12.14□□□□□ -0.47
RTN3-209ENST00000538995 NUP62CLQ9H1M0 184 aa12.14□□□□□ -0.47
RTN3-209ENST00000538995 LRRC4Q9HBW1 653 aa12.14□□□□□ -0.47
RTN3-209ENST00000538995 OLA1Q9NTK5 396 aaKnown RBP12.14□□□□□ -0.47
RTN3-209ENST00000538995 DACH1Q9UI36 760 aa12.14□□□□□ -0.47
RTN3-209ENST00000538995 GMEB2Q9UKD1 530 aa12.14□□□□□ -0.47
RTN3-209ENST00000538995 STRIP2Q9ULQ0 834 aa12.14□□□□□ -0.47
RTN3-209ENST00000538995 WDR3Q9UNX4 943 aaKnown RBP eCLIP12.14□□□□□ -0.47
RTN3-209ENST00000538995 CNTN6Q9UQ52 1028 aa12.14□□□□□ -0.47
RTN3-209ENST00000538995 ZNF510Q9Y2H8 683 aa12.14□□□□□ -0.47
RTN3-209ENST00000538995 PCDHB4Q9Y5E5 795 aa12.14□□□□□ -0.47
RTN3-209ENST00000538995 SPTBN4Q9H254 2564 aa12.14□□□□□ -0.47
RTN3-209ENST00000538995 MYO16Q9Y6X6 1858 aa12.13□□□□□ -0.47
RTN3-209ENST00000538995 GTPBP10A4D1E9 387 aaKnown RBP12.13□□□□□ -0.47
RTN3-209ENST00000538995 CACNG3O60359 315 aa12.13□□□□□ -0.47
RTN3-209ENST00000538995 STC2O76061 302 aa12.13□□□□□ -0.47
RTN3-209ENST00000538995 APBB3O95704 486 aa12.13□□□□□ -0.47
RTN3-209ENST00000538995 PRKCSHP14314 528 aaPredicted RBP12.13□□□□□ -0.47
RTN3-209ENST00000538995 TNFRSF4P43489 277 aa12.13□□□□□ -0.47
RTN3-209ENST00000538995 YWHAGP61981 247 aaKnown RBP eCLIP12.13□□□□□ -0.47
RTN3-209ENST00000538995 SIM2Q14190 667 aaPredicted RBP12.13□□□□□ -0.47
RTN3-209ENST00000538995 DMC1Q14565 340 aa12.13□□□□□ -0.47
RTN3-209ENST00000538995 HEATR6Q6AI08 1181 aaKnown RBP12.13□□□□□ -0.47
RTN3-209ENST00000538995 NUDT18Q6ZVK8 323 aa12.13□□□□□ -0.47
RTN3-209ENST00000538995 RSRC2Q7L4I2 434 aaKnown RBP12.13□□□□□ -0.47
RTN3-209ENST00000538995 C12orf40Q86WS4 652 aa12.13□□□□□ -0.47
RTN3-209ENST00000538995 ARHGEF19Q8IW93 802 aa12.13□□□□□ -0.47
RTN3-209ENST00000538995 SIX6OS1Q8N1H7 587 aa12.13□□□□□ -0.47
RTN3-209ENST00000538995 PHTF2Q8N3S3 785 aa12.13□□□□□ -0.47
RTN3-209ENST00000538995 KCNV2Q8TDN2 545 aa12.13□□□□□ -0.47
RTN3-209ENST00000538995 TFAP2BQ92481 460 aa12.13□□□□□ -0.47
RTN3-209ENST00000538995 KAT5Q92993 513 aa12.13□□□□□ -0.47
RTN3-209ENST00000538995 WBP2Q969T9 261 aa12.13□□□□□ -0.47
RTN3-209ENST00000538995 IPO9Q96P70 1041 aaKnown RBP12.13□□□□□ -0.47
RTN3-209ENST00000538995 MED15Q96RN5 788 aa12.13□□□□□ -0.47
RTN3-209ENST00000538995 ULBP1Q9BZM6 244 aa12.13□□□□□ -0.47
RTN3-209ENST00000538995 DCLK3Q9C098 648 aa12.13□□□□□ -0.47
RTN3-209ENST00000538995 THAP9Q9H5L6 903 aa12.13□□□□□ -0.47
RTN3-209ENST00000538995 CNGB3Q9NQW8 809 aa12.13□□□□□ -0.47
RTN3-209ENST00000538995 ARHGEF4Q9NR80 690 aa12.13□□□□□ -0.47
RTN3-209ENST00000538995 WDR35Q9P2L0 1181 aa12.13□□□□□ -0.47
Retrieved 100 of 20,778 RNA–protein pairs in 19.9 ms