RNA–Protein interactions for RNA: ENST00000537178.5

CLIP1-209, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene CLIP1, Length 5,229 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-209ENST00000537178 SPRTNQ9H040 489 aaPredicted RBP10.97□□□□□ -0.65
CLIP1-209ENST00000537178 CLPBQ9H078 707 aa10.97□□□□□ -0.65
CLIP1-209ENST00000537178 FANCEQ9HB96 536 aa10.97□□□□□ -0.65
CLIP1-209ENST00000537178 KLHL3Q9UH77 587 aa10.97□□□□□ -0.65
CLIP1-209ENST00000537178 ZNF609O15014 1411 aa10.97□□□□□ -0.65
CLIP1-209ENST00000537178 FAM47E-STBD1D6RA91 191 aa10.97□□□□□ -0.65
CLIP1-209ENST00000537178 ATMINO43313 823 aaPredicted RBP10.97□□□□□ -0.65
CLIP1-209ENST00000537178 FKBP6O75344 327 aa10.97□□□□□ -0.65
CLIP1-209ENST00000537178 ASS1P00966 412 aaKnown RBP10.97□□□□□ -0.65
CLIP1-209ENST00000537178 NQO1P15559 274 aaKnown RBP10.97□□□□□ -0.65
CLIP1-209ENST00000537178 CNTFP26441 200 aa10.97□□□□□ -0.65
CLIP1-209ENST00000537178 ARMC4Q5T2S8 1044 aa10.97□□□□□ -0.65
CLIP1-209ENST00000537178 C11orf88Q6PI97 169 aa10.97□□□□□ -0.65
CLIP1-209ENST00000537178 VN1R5Q7Z5H4 357 aa10.97□□□□□ -0.65
CLIP1-209ENST00000537178 PARK7Q99497 189 aaKnown RBP10.97□□□□□ -0.65
CLIP1-209ENST00000537178 PACSIN1Q9BY11 444 aa10.97□□□□□ -0.65
CLIP1-209ENST00000537178 FHDC1Q9C0D6 1143 aaPredicted RBP10.97□□□□□ -0.65
CLIP1-209ENST00000537178 GANQ9H2C0 597 aa10.97□□□□□ -0.65
CLIP1-209ENST00000537178 SERHL2Q9H4I8 314 aa10.97□□□□□ -0.65
CLIP1-209ENST00000537178 SERHLQ9NQF3 203 aa10.97□□□□□ -0.65
CLIP1-209ENST00000537178 AVENQ9NQS1 362 aaPredicted RBP10.97□□□□□ -0.65
CLIP1-209ENST00000537178 M0QYT0 321 aa10.97□□□□□ -0.65
CLIP1-209ENST00000537178 ATP6V1B2P21281 511 aa10.97□□□□□ -0.65
CLIP1-209ENST00000537178 GARTP22102 1010 aa10.97□□□□□ -0.65
CLIP1-209ENST00000537178 ITGA9Q13797 1035 aa10.97□□□□□ -0.65
CLIP1-209ENST00000537178 PDK2Q15119 407 aa10.97□□□□□ -0.65
CLIP1-209ENST00000537178 ZC2HC1CQ53FD0 456 aaPredicted RBP10.97□□□□□ -0.65
CLIP1-209ENST00000537178 ZBTB49Q6ZSB9 765 aa10.97□□□□□ -0.65
CLIP1-209ENST00000537178 ATG16L2Q8NAA4 619 aa10.97□□□□□ -0.65
CLIP1-209ENST00000537178 NOA1Q8NC60 698 aaKnown RBP10.97□□□□□ -0.65
CLIP1-209ENST00000537178 NSUN4Q96CB9 384 aaKnown RBP10.97□□□□□ -0.65
CLIP1-209ENST00000537178 MAML3Q96JK9 1138 aa10.97□□□□□ -0.65
CLIP1-209ENST00000537178 NCKIPSDQ9NZQ3 722 aa10.97□□□□□ -0.65
CLIP1-209ENST00000537178 DYRK1BQ9Y463 629 aa10.97□□□□□ -0.65
CLIP1-209ENST00000537178 NHSL1Q5SYE7 1610 aa10.97□□□□□ -0.65
CLIP1-209ENST00000537178 ZC3H11BA0A1B0GUI2 810 aaPredicted RBP10.96□□□□□ -0.65
CLIP1-209ENST00000537178 H7C0S8 307 aa10.96□□□□□ -0.65
CLIP1-209ENST00000537178 CLPTM1O96005 669 aa10.96□□□□□ -0.65
CLIP1-209ENST00000537178 CALB2P22676 271 aa10.96□□□□□ -0.65
CLIP1-209ENST00000537178 PPP2R1BP30154 601 aa10.96□□□□□ -0.65
CLIP1-209ENST00000537178 HNRNPH1P31943 449 aaKnown RBP10.96□□□□□ -0.65
CLIP1-209ENST00000537178 SERPINB5P36952 375 aa10.96□□□□□ -0.65
CLIP1-209ENST00000537178 PLIN5Q00G26 463 aa10.96□□□□□ -0.65
CLIP1-209ENST00000537178 ZNF284Q2VY69 593 aa10.96□□□□□ -0.65
CLIP1-209ENST00000537178 CDK20Q8IZL9 346 aa10.96□□□□□ -0.65
CLIP1-209ENST00000537178 OR8H2Q8N162 312 aa10.96□□□□□ -0.65
CLIP1-209ENST00000537178 MAGEB18Q96M61 343 aa10.96□□□□□ -0.65
CLIP1-209ENST00000537178 MXRA8Q9BRK3 442 aa10.96□□□□□ -0.65
CLIP1-209ENST00000537178 TARS2Q9BW92 718 aaKnown RBP10.96□□□□□ -0.65
CLIP1-209ENST00000537178 VCPKMTQ9H867 229 aa10.96□□□□□ -0.65
CLIP1-209ENST00000537178 CHST12Q9NRB3 414 aa10.96□□□□□ -0.65
CLIP1-209ENST00000537178 PRR12Q9ULL5 1215 aa10.96□□□□□ -0.65
CLIP1-209ENST00000537178 O00370 1275 aa10.96□□□□□ -0.65
CLIP1-209ENST00000537178 MKRN4PQ13434 485 aaPredicted RBP10.96□□□□□ -0.65
CLIP1-209ENST00000537178 OASLQ15646 514 aaKnown RBP10.96□□□□□ -0.65
CLIP1-209ENST00000537178 GALNTL6Q49A17 601 aa10.96□□□□□ -0.65
CLIP1-209ENST00000537178 EFCAB12Q6NXP0 572 aa10.96□□□□□ -0.65
CLIP1-209ENST00000537178 C1orf131Q8NDD1 294 aaKnown RBP10.96□□□□□ -0.65
CLIP1-209ENST00000537178 FAM120BQ96EK7 910 aaKnown RBP10.96□□□□□ -0.65
CLIP1-209ENST00000537178 SMAD5Q99717 465 aaKnown RBP10.96□□□□□ -0.65
CLIP1-209ENST00000537178 RERGLQ9H628 205 aa10.96□□□□□ -0.65
CLIP1-209ENST00000537178 ELP3Q9H9T3 547 aa10.96□□□□□ -0.65
CLIP1-209ENST00000537178 SLC25A13Q9UJS0 675 aa10.96□□□□□ -0.65
CLIP1-209ENST00000537178 RUVBL2Q9Y230 463 aaKnown RBP10.96□□□□□ -0.65
CLIP1-209ENST00000537178 ACOT9Q9Y305 439 aa10.96□□□□□ -0.65
CLIP1-209ENST00000537178 F5H5T6 163 aa10.96□□□□□ -0.66
CLIP1-209ENST00000537178 LRG1P02750 347 aa10.96□□□□□ -0.66
CLIP1-209ENST00000537178 GYPCP04921 128 aa10.96□□□□□ -0.66
CLIP1-209ENST00000537178 FLT3P36888 993 aa10.96□□□□□ -0.66
CLIP1-209ENST00000537178 MFSD4BQ5TF39 518 aa10.96□□□□□ -0.66
CLIP1-209ENST00000537178 MDM1Q8TC05 714 aa10.96□□□□□ -0.66
CLIP1-209ENST00000537178 ROGDIQ9GZN7 287 aa10.96□□□□□ -0.66
CLIP1-209ENST00000537178 FAM153AQ9UHL3 310 aa10.96□□□□□ -0.66
CLIP1-209ENST00000537178 SPATA2Q9UM82 520 aa10.96□□□□□ -0.66
CLIP1-209ENST00000537178 FAM220BPB1ANY3 271 aa10.96□□□□□ -0.66
CLIP1-209ENST00000537178 ZNF862O60290 1169 aa10.96□□□□□ -0.66
CLIP1-209ENST00000537178 ZNF682O95780 498 aa10.96□□□□□ -0.66
CLIP1-209ENST00000537178 ODC1P11926 461 aa10.96□□□□□ -0.66
CLIP1-209ENST00000537178 RARGP13631 454 aa10.96□□□□□ -0.66
CLIP1-209ENST00000537178 SNAPC2Q13487 334 aa10.96□□□□□ -0.66
CLIP1-209ENST00000537178 CRYMQ14894 314 aa10.96□□□□□ -0.66
CLIP1-209ENST00000537178 INAQ16352 499 aa10.96□□□□□ -0.66
CLIP1-209ENST00000537178 STRIP1Q5VSL9 837 aa10.96□□□□□ -0.66
CLIP1-209ENST00000537178 TPCN2Q8NHX9 752 aa10.96□□□□□ -0.66
CLIP1-209ENST00000537178 COLEC11Q9BWP8 271 aa10.96□□□□□ -0.66
CLIP1-209ENST00000537178 AAASQ9NRG9 546 aa10.96□□□□□ -0.66
CLIP1-209ENST00000537178 DAGLAQ9Y4D2 1042 aa10.96□□□□□ -0.66
CLIP1-209ENST00000537178 STON1Q9Y6Q2 735 aa10.96□□□□□ -0.66
CLIP1-209ENST00000537178 KDM6AO15550 1401 aaPredicted RBP10.96□□□□□ -0.66
CLIP1-209ENST00000537178 SMIM31A0A1B0GVY4 71 aa10.95□□□□□ -0.66
CLIP1-209ENST00000537178 CUL2Q13617 745 aa10.95□□□□□ -0.66
CLIP1-209ENST00000537178 TYW3Q6IPR3 259 aaKnown RBP10.95□□□□□ -0.66
CLIP1-209ENST00000537178 PLEKHA7Q6IQ23 1121 aa10.95□□□□□ -0.66
CLIP1-209ENST00000537178 HEATR4Q86WZ0 1026 aa10.95□□□□□ -0.66
CLIP1-209ENST00000537178 CD302Q8IX05 232 aa10.95□□□□□ -0.66
CLIP1-209ENST00000537178 ZNF513Q8N8E2 541 aaPredicted RBP10.95□□□□□ -0.66
CLIP1-209ENST00000537178 B3GALNT2Q8NCR0 500 aa10.95□□□□□ -0.66
CLIP1-209ENST00000537178 ARMC7Q9H6L4 198 aa10.95□□□□□ -0.66
CLIP1-209ENST00000537178 ENOPH1Q9UHY7 261 aa10.95□□□□□ -0.66
CLIP1-209ENST00000537178 ZNRF3Q9ULT6 936 aa10.95□□□□□ -0.66
Retrieved 100 of 20,778 RNA–protein pairs in 60 ms