RNA–Protein interactions for RNA: ENST00000536483.1

PRKDC-207, Transcript of protein kinase, DNA-activated, catalytic subunit, humanhuman

TSL 2

Gene PRKDC, Length 834 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PRKDC-207ENST00000536483 FMO5P49326 533 aa13.15□□□□□ -0.3
PRKDC-207ENST00000536483 SHC2P98077 582 aa13.15□□□□□ -0.3
PRKDC-207ENST00000536483 TAF10Q12962 218 aa13.15□□□□□ -0.3
PRKDC-207ENST00000536483 GAB4Q2WGN9 574 aa13.15□□□□□ -0.3
PRKDC-207ENST00000536483 USP39Q53GS9 565 aaKnown RBP13.15□□□□□ -0.3
PRKDC-207ENST00000536483 ANO7Q6IWH7 933 aa13.15□□□□□ -0.3
PRKDC-207ENST00000536483 PSAPL1Q6NUJ1 521 aa13.15□□□□□ -0.3
PRKDC-207ENST00000536483 TRIM59Q8IWR1 403 aa13.15□□□□□ -0.3
PRKDC-207ENST00000536483 ZNF276Q8N554 614 aa13.15□□□□□ -0.3
PRKDC-207ENST00000536483 CCDC33Q8N5R6 958 aa13.15□□□□□ -0.3
PRKDC-207ENST00000536483 UBR7Q8N806 425 aa13.15□□□□□ -0.3
PRKDC-207ENST00000536483 C12orf29Q8N999 325 aa13.15□□□□□ -0.3
PRKDC-207ENST00000536483 CCDC26Q8TAB7 109 aa13.15□□□□□ -0.3
PRKDC-207ENST00000536483 LMO3Q8TAP4 145 aa13.15□□□□□ -0.3
PRKDC-207ENST00000536483 SLC2A14Q8TDB8 520 aa13.15□□□□□ -0.3
PRKDC-207ENST00000536483 NELFBQ8WX92 580 aa13.15□□□□□ -0.3
PRKDC-207ENST00000536483 CYFIP2Q96F07 1278 aa13.15□□□□□ -0.3
PRKDC-207ENST00000536483 SLITRK1Q96PX8 696 aa13.15□□□□□ -0.3
PRKDC-207ENST00000536483 RNF38Q9H0F5 515 aa13.15□□□□□ -0.3
PRKDC-207ENST00000536483 SCAMP3O14828 347 aaKnown RBP13.14□□□□□ -0.31
PRKDC-207ENST00000536483 AP1G2O75843 785 aa13.14□□□□□ -0.31
PRKDC-207ENST00000536483 BEST1O76090 585 aa13.14□□□□□ -0.31
PRKDC-207ENST00000536483 ABL1P00519 1130 aa13.14□□□□□ -0.31
PRKDC-207ENST00000536483 SLC6A11P48066 632 aa13.14□□□□□ -0.31
PRKDC-207ENST00000536483 SLC5A3P53794 718 aa13.14□□□□□ -0.31
PRKDC-207ENST00000536483 PAK1Q13153 545 aa13.14□□□□□ -0.31
PRKDC-207ENST00000536483 CRY1Q16526 586 aa13.14□□□□□ -0.31
PRKDC-207ENST00000536483 PMS2CLQ68D20 193 aa13.14□□□□□ -0.31
PRKDC-207ENST00000536483 ARHGAP17Q68EM7 881 aa13.14□□□□□ -0.31
PRKDC-207ENST00000536483 ISM2Q6H9L7 571 aa13.14□□□□□ -0.31
PRKDC-207ENST00000536483 CLEC20AQ6ZU45 233 aa13.14□□□□□ -0.31
PRKDC-207ENST00000536483 RASSF3Q86WH2 238 aa13.14□□□□□ -0.31
PRKDC-207ENST00000536483 TTC30AQ86WT1 665 aa13.14□□□□□ -0.31
PRKDC-207ENST00000536483 ADGRG2Q8IZP9 1017 aa13.14□□□□□ -0.31
PRKDC-207ENST00000536483 TATDN2Q93075 761 aa13.14□□□□□ -0.31
PRKDC-207ENST00000536483 FBXO44Q9H4M3 255 aa13.14□□□□□ -0.31
PRKDC-207ENST00000536483 KRT82Q9NSB4 513 aa13.14□□□□□ -0.31
PRKDC-207ENST00000536483 CISHQ9NSE2 258 aa13.14□□□□□ -0.31
PRKDC-207ENST00000536483 SMPD4Q9NXE4 827 aa13.14□□□□□ -0.31
PRKDC-207ENST00000536483 RWDD2AQ9UIY3 292 aa13.14□□□□□ -0.31
PRKDC-207ENST00000536483 MMP17Q9ULZ9 603 aa13.14□□□□□ -0.31
PRKDC-207ENST00000536483 CPQQ9Y646 472 aa13.14□□□□□ -0.31
PRKDC-207ENST00000536483 USP3Q9Y6I4 520 aa13.14□□□□□ -0.31
PRKDC-207ENST00000536483 MYO16Q9Y6X6 1858 aa13.14□□□□□ -0.31
PRKDC-207ENST00000536483 FRYQ5TBA9 3013 aa13.13□□□□□ -0.31
PRKDC-207ENST00000536483 ASPMQ8IZT6 3477 aa13.13□□□□□ -0.31
PRKDC-207ENST00000536483 LNP1A1A4G5 178 aa13.13□□□□□ -0.31
PRKDC-207ENST00000536483 GIPC1O14908 333 aa13.13□□□□□ -0.31
PRKDC-207ENST00000536483 CYP17A1P05093 508 aa13.13□□□□□ -0.31
PRKDC-207ENST00000536483 FAM200BP0CF97 657 aa13.13□□□□□ -0.31
PRKDC-207ENST00000536483 CCDC130P13994 396 aa13.13□□□□□ -0.31
PRKDC-207ENST00000536483 BCKDHBP21953 392 aa13.13□□□□□ -0.31
PRKDC-207ENST00000536483 TBXAS1P24557 533 aaPredicted RBP13.13□□□□□ -0.31
PRKDC-207ENST00000536483 NOVA1P51513 510 aaKnown RBP13.13□□□□□ -0.31
PRKDC-207ENST00000536483 RAD23BP54727 409 aa13.13□□□□□ -0.31
PRKDC-207ENST00000536483 MESP2Q0VG99 397 aa13.13□□□□□ -0.31
PRKDC-207ENST00000536483 CUL2Q13617 745 aa13.13□□□□□ -0.31
PRKDC-207ENST00000536483 DHCR24Q15392 516 aa13.13□□□□□ -0.31
PRKDC-207ENST00000536483 DCAF17Q5H9S7 520 aaPredicted RBP13.13□□□□□ -0.31
PRKDC-207ENST00000536483 TCERG1LQ5VWI1 586 aa13.13□□□□□ -0.31
PRKDC-207ENST00000536483 TMEM92Q6UXU6 159 aa13.13□□□□□ -0.31
PRKDC-207ENST00000536483 C11orf74Q86VG3 221 aa13.13□□□□□ -0.31
PRKDC-207ENST00000536483 SFTPA1Q8IWL2 248 aa13.13□□□□□ -0.31
PRKDC-207ENST00000536483 MLKLQ8NB16 471 aa13.13□□□□□ -0.31
PRKDC-207ENST00000536483 SLC4A11Q8NBS3 891 aa13.13□□□□□ -0.31
PRKDC-207ENST00000536483 MDGA1Q8NFP4 955 aa13.13□□□□□ -0.31
PRKDC-207ENST00000536483 SCAMP5Q8TAC9 235 aa13.13□□□□□ -0.31
PRKDC-207ENST00000536483 TMEM176AQ96HP8 235 aa13.13□□□□□ -0.31
PRKDC-207ENST00000536483 CNOT6LQ96LI5 555 aaKnown RBP13.13□□□□□ -0.31
PRKDC-207ENST00000536483 MED15Q96RN5 788 aa13.13□□□□□ -0.31
PRKDC-207ENST00000536483 MED10Q9BTT4 135 aa13.13□□□□□ -0.31
PRKDC-207ENST00000536483 DUSP16Q9BY84 665 aa13.13□□□□□ -0.31
PRKDC-207ENST00000536483 CLSTN2Q9H4D0 955 aa13.13□□□□□ -0.31
PRKDC-207ENST00000536483 MMRN2Q9H8L6 949 aa13.13□□□□□ -0.31
PRKDC-207ENST00000536483 KIAA1257Q9ULG3 409 aa13.13□□□□□ -0.31
PRKDC-207ENST00000536483 SCML2Q9UQR0 700 aa13.13□□□□□ -0.31
PRKDC-207ENST00000536483 CEP295Q9C0D2 2601 aa13.13□□□□□ -0.31
PRKDC-207ENST00000536483 KIAA1549LQ6ZVL6 1849 aa13.12□□□□□ -0.31
PRKDC-207ENST00000536483 PATE3B3GLJ2 98 aa13.12□□□□□ -0.31
PRKDC-207ENST00000536483 BIN1O00499 593 aa13.12□□□□□ -0.31
PRKDC-207ENST00000536483 KHNYNO15037 678 aaKnown RBP13.12□□□□□ -0.31
PRKDC-207ENST00000536483 FGFR1OPO95684 399 aaKnown RBP13.12□□□□□ -0.31
PRKDC-207ENST00000536483 HNRNPLP14866 589 aaKnown RBP eCLIP13.12□□□□□ -0.31
PRKDC-207ENST00000536483 KIF11P52732 1056 aa13.12□□□□□ -0.31
PRKDC-207ENST00000536483 YWHAEP62258 255 aaKnown RBP13.12□□□□□ -0.31
PRKDC-207ENST00000536483 MRPS21P82921 87 aaKnown RBP13.12□□□□□ -0.31
PRKDC-207ENST00000536483 IFRD2Q12894 506 aaPredicted RBP13.12□□□□□ -0.31
PRKDC-207ENST00000536483 CT47A1Q5JQC4 288 aaPredicted RBP13.12□□□□□ -0.31
PRKDC-207ENST00000536483 HECTD3Q5T447 861 aa13.12□□□□□ -0.31
PRKDC-207ENST00000536483 EMC10Q5UCC4 262 aa13.12□□□□□ -0.31
PRKDC-207ENST00000536483 DAB2IPQ5VWQ8 1189 aa13.12□□□□□ -0.31
PRKDC-207ENST00000536483 KLHL10Q6JEL2 608 aa13.12□□□□□ -0.31
PRKDC-207ENST00000536483 KLHDC10Q6PID8 442 aa13.12□□□□□ -0.31
PRKDC-207ENST00000536483 RHBDF2Q6PJF5 856 aa13.12□□□□□ -0.31
PRKDC-207ENST00000536483 ALLCQ8N6M5 410 aa13.12□□□□□ -0.31
PRKDC-207ENST00000536483 ZFRQ96KR1 1074 aaKnown RBP13.12□□□□□ -0.31
PRKDC-207ENST00000536483 PNKPQ96T60 521 aa13.12□□□□□ -0.31
PRKDC-207ENST00000536483 ARID3AQ99856 593 aa13.12□□□□□ -0.31
PRKDC-207ENST00000536483 SRRTQ9BXP5 876 aaKnown RBP13.12□□□□□ -0.31
PRKDC-207ENST00000536483 CYLDQ9NQC7 956 aa13.12□□□□□ -0.31
Retrieved 100 of 20,778 RNA–protein pairs in 14 ms