RNA–Protein interactions for RNA: ENST00000532560.5

CPSF1-208, Transcript of cleavage and polyadenylation specific factor 1, humanhuman

TSL 3

Gene CPSF1, Length 701 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF1-208ENST00000532560 GABBR2O75899 941 aa15.79■□□□□ 0.12
CPSF1-208ENST00000532560 TBX18O95935 607 aa15.79■□□□□ 0.12
CPSF1-208ENST00000532560 PNMA6AP0CW24 399 aaPredicted RBP15.79■□□□□ 0.12
CPSF1-208ENST00000532560 ARSAP15289 507 aa15.79■□□□□ 0.12
CPSF1-208ENST00000532560 TARSP26639 723 aaKnown RBP15.79■□□□□ 0.12
CPSF1-208ENST00000532560 CLCN1P35523 988 aa15.79■□□□□ 0.12
CPSF1-208ENST00000532560 ATP5C1P36542 298 aaKnown RBP15.79■□□□□ 0.12
CPSF1-208ENST00000532560 GPD2P43304 727 aa15.79■□□□□ 0.12
CPSF1-208ENST00000532560 RGS7P49802 495 aa15.79■□□□□ 0.12
CPSF1-208ENST00000532560 KLK7P49862 253 aa15.79■□□□□ 0.12
CPSF1-208ENST00000532560 BPIFB4P59827 614 aa15.79■□□□□ 0.12
CPSF1-208ENST00000532560 YWHAGP61981 247 aaKnown RBP eCLIP15.79■□□□□ 0.12
CPSF1-208ENST00000532560 UBXN1Q04323 297 aa15.79■□□□□ 0.12
CPSF1-208ENST00000532560 UBXN2BQ14CS0 331 aa15.79■□□□□ 0.12
CPSF1-208ENST00000532560 C10orf120Q5SQS8 335 aa15.79■□□□□ 0.12
CPSF1-208ENST00000532560 DENND1BQ6P3S1 775 aa15.79■□□□□ 0.12
CPSF1-208ENST00000532560 CPA6Q8N4T0 437 aa15.79■□□□□ 0.12
CPSF1-208ENST00000532560 STK32AQ8WU08 396 aa15.79■□□□□ 0.12
CPSF1-208ENST00000532560 FAM3CQ92520 227 aa15.79■□□□□ 0.12
CPSF1-208ENST00000532560 ANP32BQ92688 251 aaKnown RBP15.79■□□□□ 0.12
CPSF1-208ENST00000532560 ERGIC2Q96RQ1 377 aa15.79■□□□□ 0.12
CPSF1-208ENST00000532560 NELL2Q99435 816 aa15.79■□□□□ 0.12
CPSF1-208ENST00000532560 STK33Q9BYT3 514 aa15.79■□□□□ 0.12
CPSF1-208ENST00000532560 FAM207AQ9NSI2 230 aaPredicted RBP15.79■□□□□ 0.12
CPSF1-208ENST00000532560 DNMT3LQ9UJW3 386 aa15.79■□□□□ 0.12
CPSF1-208ENST00000532560 PCDHGC3Q9UN70 934 aa15.79■□□□□ 0.12
CPSF1-208ENST00000532560 SIT1Q9Y3P8 196 aa15.79■□□□□ 0.12
CPSF1-208ENST00000532560 F5P12259 2224 aa15.79■□□□□ 0.12
CPSF1-208ENST00000532560 FBXO21O94952 628 aa15.78■□□□□ 0.12
CPSF1-208ENST00000532560 NFATC1O95644 943 aa15.78■□□□□ 0.12
CPSF1-208ENST00000532560 LCP1P13796 627 aa15.78■□□□□ 0.12
CPSF1-208ENST00000532560 CD72P21854 359 aa15.78■□□□□ 0.12
CPSF1-208ENST00000532560 MAGEA9P43362 315 aa15.78■□□□□ 0.12
CPSF1-208ENST00000532560 ACADSBP45954 432 aa15.78■□□□□ 0.12
CPSF1-208ENST00000532560 SOX9P48436 509 aa15.78■□□□□ 0.12
CPSF1-208ENST00000532560 DAOAP59103 153 aa15.78■□□□□ 0.12
CPSF1-208ENST00000532560 GOLGA8FQ08AF8 430 aa15.78■□□□□ 0.12
CPSF1-208ENST00000532560 GOLGA8DPQ0D2H9 430 aa15.78■□□□□ 0.12
CPSF1-208ENST00000532560 SYCP1Q15431 976 aa15.78■□□□□ 0.12
CPSF1-208ENST00000532560 SLC47A2Q86VL8 602 aa15.78■□□□□ 0.12
CPSF1-208ENST00000532560 ZNF687Q8N1G0 1237 aa15.78■□□□□ 0.12
CPSF1-208ENST00000532560 IRGQQ8WZA9 623 aa15.78■□□□□ 0.12
CPSF1-208ENST00000532560 OTUB2Q96DC9 234 aa15.78■□□□□ 0.12
CPSF1-208ENST00000532560 PRRX2Q99811 253 aa15.78■□□□□ 0.12
CPSF1-208ENST00000532560 KLF16Q9BXK1 252 aaPredicted RBP15.78■□□□□ 0.12
CPSF1-208ENST00000532560 ECT2Q9H8V3 914 aa15.78■□□□□ 0.12
CPSF1-208ENST00000532560 CBX8Q9HC52 389 aa15.78■□□□□ 0.12
CPSF1-208ENST00000532560 DLGAP2Q9P1A6 1054 aa15.78■□□□□ 0.12
CPSF1-208ENST00000532560 TBC1D14Q9P2M4 693 aa15.78■□□□□ 0.12
CPSF1-208ENST00000532560 RAPGEFL1Q9UHV5 662 aa15.78■□□□□ 0.12
CPSF1-208ENST00000532560 SH3BP1Q9Y3L3 701 aa15.78■□□□□ 0.12
CPSF1-208ENST00000532560 ARIH1Q9Y4X5 557 aaPredicted RBP15.78■□□□□ 0.12
CPSF1-208ENST00000532560 OTOL1A6NHN0 477 aaPredicted RBP15.77■□□□□ 0.12
CPSF1-208ENST00000532560 FAM170BA6NMN3 283 aa15.77■□□□□ 0.12
CPSF1-208ENST00000532560 EPHB6O15197 1021 aa15.77■□□□□ 0.12
CPSF1-208ENST00000532560 SART1O43290 800 aaKnown RBP15.77■□□□□ 0.12
CPSF1-208ENST00000532560 PDCLQ13371 301 aa15.77■□□□□ 0.12
CPSF1-208ENST00000532560 TXNDC11Q6PKC3 985 aa15.77■□□□□ 0.12
CPSF1-208ENST00000532560 TTC8Q8TAM2 541 aa15.77■□□□□ 0.12
CPSF1-208ENST00000532560 CLDN23Q96B33 292 aa15.77■□□□□ 0.12
CPSF1-208ENST00000532560 CHFRQ96EP1 664 aa15.77■□□□□ 0.12
CPSF1-208ENST00000532560 SLC4A5Q9BY07 1137 aa15.77■□□□□ 0.12
CPSF1-208ENST00000532560 LHX5Q9H2C1 402 aa15.77■□□□□ 0.12
CPSF1-208ENST00000532560 LINC00597Q9H2U6 94 aa15.77■□□□□ 0.12
CPSF1-208ENST00000532560 OLA1Q9NTK5 396 aaKnown RBP15.77■□□□□ 0.12
CPSF1-208ENST00000532560 NUDT5Q9UKK9 219 aa15.77■□□□□ 0.12
CPSF1-208ENST00000532560 MTF2Q9Y483 593 aaPredicted RBP15.77■□□□□ 0.12
CPSF1-208ENST00000532560 YJEFN3A6XGL0 299 aa15.76■□□□□ 0.11
CPSF1-208ENST00000532560 E7ENQ6 273 aa15.76■□□□□ 0.11
CPSF1-208ENST00000532560 MDM4O15151 490 aa15.76■□□□□ 0.11
CPSF1-208ENST00000532560 NCAM2O15394 837 aa15.76■□□□□ 0.11
CPSF1-208ENST00000532560 GREM1O60565 184 aa15.76■□□□□ 0.11
CPSF1-208ENST00000532560 CYP17A1P05093 508 aa15.76■□□□□ 0.11
CPSF1-208ENST00000532560 DCNP07585 359 aaKnown RBP15.76■□□□□ 0.11
CPSF1-208ENST00000532560 IRF1P10914 325 aa15.76■□□□□ 0.11
CPSF1-208ENST00000532560 CYP11B1P15538 503 aa15.76■□□□□ 0.11
CPSF1-208ENST00000532560 RPS9P46781 194 aaKnown RBP15.76■□□□□ 0.11
CPSF1-208ENST00000532560 JAM2P57087 298 aa15.76■□□□□ 0.11
CPSF1-208ENST00000532560 POLR2FP61218 127 aaKnown RBP15.76■□□□□ 0.11
CPSF1-208ENST00000532560 TPM4P67936 248 aa15.76■□□□□ 0.11
CPSF1-208ENST00000532560 AMPD2Q01433 879 aa15.76■□□□□ 0.11
CPSF1-208ENST00000532560 BSPRYQ5W0U4 402 aa15.76■□□□□ 0.11
CPSF1-208ENST00000532560 BTBD8Q5XKL5 378 aa15.76■□□□□ 0.11
CPSF1-208ENST00000532560 RSRC2Q7L4I2 434 aaKnown RBP15.76■□□□□ 0.11
CPSF1-208ENST00000532560 LUZP1Q86V48 1076 aa15.76■□□□□ 0.11
CPSF1-208ENST00000532560 NEK11Q8NG66 645 aa15.76■□□□□ 0.11
CPSF1-208ENST00000532560 NDRG1Q92597 394 aaKnown RBP15.76■□□□□ 0.11
CPSF1-208ENST00000532560 RTN4Q9NQC3 1192 aaKnown RBP15.76■□□□□ 0.11
CPSF1-208ENST00000532560 ST7Q9NRC1 585 aa15.76■□□□□ 0.11
CPSF1-208ENST00000532560 ABCC13Q9NSE7 274 aa15.76■□□□□ 0.11
CPSF1-208ENST00000532560 MARCH2Q9P0N8 246 aa15.76■□□□□ 0.11
CPSF1-208ENST00000532560 CYTH4Q9UIA0 394 aa15.76■□□□□ 0.11
CPSF1-208ENST00000532560 RASAL2Q9UJF2 1139 aa15.76■□□□□ 0.11
CPSF1-208ENST00000532560 NDRG2Q9UN36 371 aaKnown RBP15.76■□□□□ 0.11
CPSF1-208ENST00000532560 PIK3R2O00459 728 aa15.75■□□□□ 0.11
CPSF1-208ENST00000532560 SCAMP3O14828 347 aaKnown RBP15.75■□□□□ 0.11
CPSF1-208ENST00000532560 GALR2O43603 387 aaPredicted RBP15.75■□□□□ 0.11
CPSF1-208ENST00000532560 LTFP02788 710 aa15.75■□□□□ 0.11
CPSF1-208ENST00000532560 GJA4P35212 333 aa15.75■□□□□ 0.11
CPSF1-208ENST00000532560 KRT9P35527 623 aa15.75■□□□□ 0.11
Retrieved 100 of 20,778 RNA–protein pairs in 37 ms