RNA–Protein interactions for RNA: ENST00000531480.2

CPSF1-206, Transcript of cleavage and polyadenylation specific factor 1, humanhuman

TSL 3

Gene CPSF1, Length 789 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF1-206ENST00000531480 CCL26Q9Y258 94 aa15.18■□□□□ 0.02
CPSF1-206ENST00000531480 BZW2Q9Y6E2 419 aaKnown RBP15.18■□□□□ 0.02
CPSF1-206ENST00000531480 HEPACAM2A8MVW5 462 aa15.17■□□□□ 0.02
CPSF1-206ENST00000531480 LTFP02788 710 aa15.17■□□□□ 0.02
CPSF1-206ENST00000531480 ERBB2P04626 1255 aa15.17■□□□□ 0.02
CPSF1-206ENST00000531480 FYNP06241 537 aa15.17■□□□□ 0.02
CPSF1-206ENST00000531480 ASGR2P07307 311 aa15.17■□□□□ 0.02
CPSF1-206ENST00000531480 GLI1P08151 1106 aa15.17■□□□□ 0.02
CPSF1-206ENST00000531480 RARGP13631 454 aa15.17■□□□□ 0.02
CPSF1-206ENST00000531480 MMP8P22894 467 aa15.17■□□□□ 0.02
CPSF1-206ENST00000531480 VIPR2P41587 438 aa15.17■□□□□ 0.02
CPSF1-206ENST00000531480 SNX16P57768 344 aa15.17■□□□□ 0.02
CPSF1-206ENST00000531480 PTP4A2Q12974 167 aa15.17■□□□□ 0.02
CPSF1-206ENST00000531480 TDGQ13569 410 aa15.17■□□□□ 0.02
CPSF1-206ENST00000531480 ZNF77Q15935 545 aa15.17■□□□□ 0.02
CPSF1-206ENST00000531480 CLEC16AQ2KHT3 1053 aa15.17■□□□□ 0.02
CPSF1-206ENST00000531480 BSPRYQ5W0U4 402 aa15.17■□□□□ 0.02
CPSF1-206ENST00000531480 MSANTD2Q6P1R3 559 aa15.17■□□□□ 0.02
CPSF1-206ENST00000531480 OLFML1Q6UWY5 402 aa15.17■□□□□ 0.02
CPSF1-206ENST00000531480 HFE2Q6ZVN8 426 aa15.17■□□□□ 0.02
CPSF1-206ENST00000531480 ZNF571Q7Z3V5 609 aaPredicted RBP15.17■□□□□ 0.02
CPSF1-206ENST00000531480 PHF13Q86YI8 300 aaPredicted RBP15.17■□□□□ 0.02
CPSF1-206ENST00000531480 SLC30A5Q8TAD4 765 aa15.17■□□□□ 0.02
CPSF1-206ENST00000531480 RIN3Q8TB24 985 aa15.17■□□□□ 0.02
CPSF1-206ENST00000531480 RSAD2Q8WXG1 361 aa15.17■□□□□ 0.02
CPSF1-206ENST00000531480 NDRG1Q92597 394 aaKnown RBP15.17■□□□□ 0.02
CPSF1-206ENST00000531480 HAUS4Q9H6D7 363 aa15.17■□□□□ 0.02
CPSF1-206ENST00000531480 TRPC7Q9HCX4 862 aa15.17■□□□□ 0.02
CPSF1-206ENST00000531480 SLC2A4RGQ9NR83 387 aa15.17■□□□□ 0.02
CPSF1-206ENST00000531480 ST7Q9NRC1 585 aa15.17■□□□□ 0.02
CPSF1-206ENST00000531480 ABCC13Q9NSE7 274 aa15.17■□□□□ 0.02
CPSF1-206ENST00000531480 NAGPAQ9UK23 515 aa15.17■□□□□ 0.02
CPSF1-206ENST00000531480 DUSP12Q9UNI6 340 aa15.17■□□□□ 0.02
CPSF1-206ENST00000531480 ARNTLO00327 626 aa15.16■□□□□ 0.02
CPSF1-206ENST00000531480 MFAP3LO75121 409 aa15.16■□□□□ 0.02
CPSF1-206ENST00000531480 CKMP06732 381 aa15.16■□□□□ 0.02
CPSF1-206ENST00000531480 RALAP11233 206 aa15.16■□□□□ 0.02
CPSF1-206ENST00000531480 GZMAP12544 262 aa15.16■□□□□ 0.02
CPSF1-206ENST00000531480 PSMC3P17980 439 aa15.16■□□□□ 0.02
CPSF1-206ENST00000531480 ATP5C1P36542 298 aaKnown RBP15.16■□□□□ 0.02
CPSF1-206ENST00000531480 PLCB2Q00722 1185 aa15.16■□□□□ 0.02
CPSF1-206ENST00000531480 KLHL30Q0D2K2 578 aa15.16■□□□□ 0.02
CPSF1-206ENST00000531480 NAA35Q5VZE5 725 aa15.16■□□□□ 0.02
CPSF1-206ENST00000531480 WDR59Q6PJI9 974 aa15.16■□□□□ 0.02
CPSF1-206ENST00000531480 SLC26A9Q7LBE3 791 aa15.16■□□□□ 0.02
CPSF1-206ENST00000531480 TADA2BQ86TJ2 420 aa15.16■□□□□ 0.02
CPSF1-206ENST00000531480 GPIHBP1Q8IV16 184 aa15.16■□□□□ 0.02
CPSF1-206ENST00000531480 OR8K1Q8NGG5 319 aa15.16■□□□□ 0.02
CPSF1-206ENST00000531480 CPLX3Q8WVH0 158 aa15.16■□□□□ 0.02
CPSF1-206ENST00000531480 CPA5Q8WXQ8 436 aa15.16■□□□□ 0.02
CPSF1-206ENST00000531480 C18orf8Q96DM3 657 aa15.16■□□□□ 0.02
CPSF1-206ENST00000531480 PIWIL1Q96J94 861 aaKnown RBP15.16■□□□□ 0.02
CPSF1-206ENST00000531480 KXD1Q9BQD3 176 aa15.16■□□□□ 0.02
CPSF1-206ENST00000531480 LRFN3Q9BTN0 628 aa15.16■□□□□ 0.02
CPSF1-206ENST00000531480 KLF16Q9BXK1 252 aaPredicted RBP15.16■□□□□ 0.02
CPSF1-206ENST00000531480 MIS12Q9H081 205 aa15.16■□□□□ 0.02
CPSF1-206ENST00000531480 PDCL3Q9H2J4 239 aa15.16■□□□□ 0.02
CPSF1-206ENST00000531480 TRPV5Q9NQA5 729 aa15.16■□□□□ 0.02
CPSF1-206ENST00000531480 OLA1Q9NTK5 396 aaKnown RBP15.16■□□□□ 0.02
CPSF1-206ENST00000531480 PIK3R2O00459 728 aa15.15■□□□□ 0.02
CPSF1-206ENST00000531480 GREM1O60565 184 aa15.15■□□□□ 0.02
CPSF1-206ENST00000531480 TBX18O95935 607 aa15.15■□□□□ 0.02
CPSF1-206ENST00000531480 ABL1P00519 1130 aa15.15■□□□□ 0.02
CPSF1-206ENST00000531480 SERPING1P05155 500 aa15.15■□□□□ 0.02
CPSF1-206ENST00000531480 SRFP11831 508 aa15.15■□□□□ 0.02
CPSF1-206ENST00000531480 CDC25BP30305 580 aa15.15■□□□□ 0.02
CPSF1-206ENST00000531480 SLC6A3Q01959 620 aa15.15■□□□□ 0.02
CPSF1-206ENST00000531480 CCDC173Q0VFZ6 552 aa15.15■□□□□ 0.02
CPSF1-206ENST00000531480 TMEM31Q5JXX7 168 aa15.15■□□□□ 0.02
CPSF1-206ENST00000531480 PPP1R2P3Q6NXS1 205 aa15.15■□□□□ 0.02
CPSF1-206ENST00000531480 FAM183BPQ6ZVS7 135 aa15.15■□□□□ 0.02
CPSF1-206ENST00000531480 MON1BQ7L1V2 547 aa15.15■□□□□ 0.02
CPSF1-206ENST00000531480 ARCQ7LC44 396 aa15.15■□□□□ 0.02
CPSF1-206ENST00000531480 ERICH1Q86X53 443 aa15.15■□□□□ 0.02
CPSF1-206ENST00000531480 DDX42Q86XP3 938 aaKnown RBP eCLIP15.15■□□□□ 0.02
CPSF1-206ENST00000531480 XYLT1Q86Y38 959 aa15.15■□□□□ 0.02
CPSF1-206ENST00000531480 UBALD2Q8IYN6 164 aa15.15■□□□□ 0.02
CPSF1-206ENST00000531480 BPIFB1Q8TDL5 484 aa15.15■□□□□ 0.02
CPSF1-206ENST00000531480 IPO4Q8TEX9 1081 aaKnown RBP15.15■□□□□ 0.02
CPSF1-206ENST00000531480 SLC2A13Q96QE2 648 aa15.15■□□□□ 0.02
CPSF1-206ENST00000531480 TRIM62Q9BVG3 475 aa15.15■□□□□ 0.02
CPSF1-206ENST00000531480 SMG9Q9H0W8 520 aaKnown RBP15.15■□□□□ 0.02
CPSF1-206ENST00000531480 C11orf16Q9NQ32 467 aa15.15■□□□□ 0.02
CPSF1-206ENST00000531480 MUTYHQ9UIF7 546 aa15.15■□□□□ 0.02
CPSF1-206ENST00000531480 DNMT3LQ9UJW3 386 aa15.15■□□□□ 0.02
CPSF1-206ENST00000531480 CPQQ9Y646 472 aa15.15■□□□□ 0.02
CPSF1-206ENST00000531480 TCRBV5S1A1TA0A578 114 aa15.14■□□□□ 0.01
CPSF1-206ENST00000531480 LEFTY2O00292 366 aa15.14■□□□□ 0.01
CPSF1-206ENST00000531480 DDX3XO00571 662 aaKnown RBP eCLIP15.14■□□□□ 0.01
CPSF1-206ENST00000531480 CHADO15335 359 aa15.14■□□□□ 0.01
CPSF1-206ENST00000531480 YWHAZP63104 245 aaKnown RBP15.14■□□□□ 0.01
CPSF1-206ENST00000531480 CDK17Q00537 523 aa15.14■□□□□ 0.01
CPSF1-206ENST00000531480 C1QBPQ07021 282 aaKnown RBP15.14■□□□□ 0.01
CPSF1-206ENST00000531480 EIF4EBP2Q13542 120 aaPredicted RBP15.14■□□□□ 0.01
CPSF1-206ENST00000531480 EFHC1Q5JVL4 640 aa15.14■□□□□ 0.01
CPSF1-206ENST00000531480 BTBD8Q5XKL5 378 aa15.14■□□□□ 0.01
CPSF1-206ENST00000531480 TMC6Q7Z403 805 aa15.14■□□□□ 0.01
CPSF1-206ENST00000531480 CNGA4Q8IV77 575 aa15.14■□□□□ 0.01
CPSF1-206ENST00000531480 MSANTD4Q8NCY6 345 aa15.14■□□□□ 0.01
CPSF1-206ENST00000531480 SH3RF2Q8TEC5 729 aa15.14■□□□□ 0.01
Retrieved 100 of 20,778 RNA–protein pairs in 27.4 ms