RNA–Protein interactions for RNA: ENST00000531032.5

VPS28-214, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 1 (best)

Gene VPS28, Length 573 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-214ENST00000531032 PATE3B3GLJ2 98 aa11.99□□□□□ -0.49
VPS28-214ENST00000531032 HHLA1C9JL84 531 aa11.99□□□□□ -0.49
VPS28-214ENST00000531032 CDX4O14627 284 aaPredicted RBP11.99□□□□□ -0.49
VPS28-214ENST00000531032 CALUO43852 315 aaPredicted RBP11.99□□□□□ -0.49
VPS28-214ENST00000531032 CACNG3O60359 315 aa11.99□□□□□ -0.49
VPS28-214ENST00000531032 HLA-DRAP01903 254 aa11.99□□□□□ -0.49
VPS28-214ENST00000531032 FAM200BP0CF97 657 aa11.99□□□□□ -0.49
VPS28-214ENST00000531032 IRF1P10914 325 aa11.99□□□□□ -0.49
VPS28-214ENST00000531032 PIK3CAP42336 1068 aa11.99□□□□□ -0.49
VPS28-214ENST00000531032 DHPSP49366 369 aaPredicted RBP11.99□□□□□ -0.49
VPS28-214ENST00000531032 NOVA1P51513 510 aaKnown RBP11.99□□□□□ -0.49
VPS28-214ENST00000531032 VAMP7P51809 220 aa11.99□□□□□ -0.49
VPS28-214ENST00000531032 IRX4P78413 519 aa11.99□□□□□ -0.49
VPS28-214ENST00000531032 BYSLQ13895 437 aaKnown RBP11.99□□□□□ -0.49
VPS28-214ENST00000531032 NFIL3Q16649 462 aa11.99□□□□□ -0.49
VPS28-214ENST00000531032 ANO4Q32M45 955 aa11.99□□□□□ -0.49
VPS28-214ENST00000531032 CEP135Q66GS9 1140 aa11.99□□□□□ -0.49
VPS28-214ENST00000531032 KLHDC10Q6PID8 442 aa11.99□□□□□ -0.49
VPS28-214ENST00000531032 CLEC20AQ6ZU45 233 aa11.99□□□□□ -0.49
VPS28-214ENST00000531032 GPRIN1Q7Z2K8 1008 aa11.99□□□□□ -0.49
VPS28-214ENST00000531032 TRMT11Q7Z4G4 463 aaKnown RBP11.99□□□□□ -0.49
VPS28-214ENST00000531032 FRMD1Q8N878 549 aa11.99□□□□□ -0.49
VPS28-214ENST00000531032 ZNF513Q8N8E2 541 aaPredicted RBP11.99□□□□□ -0.49
VPS28-214ENST00000531032 NAT16Q8N8M0 369 aa11.99□□□□□ -0.49
VPS28-214ENST00000531032 HMGB4Q8WW32 186 aa11.99□□□□□ -0.49
VPS28-214ENST00000531032 CHAMP1Q96JM3 812 aa11.99□□□□□ -0.49
VPS28-214ENST00000531032 TWNKQ96RR1 684 aa11.99□□□□□ -0.49
VPS28-214ENST00000531032 HNRNPABQ99729 332 aaKnown RBP11.99□□□□□ -0.49
VPS28-214ENST00000531032 APOBEC3GQ9HC16 384 aaKnown RBP11.99□□□□□ -0.49
VPS28-214ENST00000531032 TMEM9BQ9NQ34 198 aa11.99□□□□□ -0.49
VPS28-214ENST00000531032 OSER1Q9NX31 292 aa11.99□□□□□ -0.49
VPS28-214ENST00000531032 BCCIPQ9P287 314 aaKnown RBP eCLIP11.99□□□□□ -0.49
VPS28-214ENST00000531032 MBD1Q9UIS9 605 aaPredicted RBP11.99□□□□□ -0.49
VPS28-214ENST00000531032 HCN2Q9UL51 889 aa11.99□□□□□ -0.49
VPS28-214ENST00000531032 SCML2Q9UQR0 700 aa11.99□□□□□ -0.49
VPS28-214ENST00000531032 STARD13Q9Y3M8 1113 aa11.99□□□□□ -0.49
VPS28-214ENST00000531032 CEP295Q9C0D2 2601 aa11.99□□□□□ -0.49
VPS28-214ENST00000531032 MSANTD3-TMEFF1A0A0A6YYJ0 341 aa11.98□□□□□ -0.49
VPS28-214ENST00000531032 CYP26A1O43174 497 aa11.98□□□□□ -0.49
VPS28-214ENST00000531032 RHOBTB3O94955 611 aa11.98□□□□□ -0.49
VPS28-214ENST00000531032 TBX18O95935 607 aa11.98□□□□□ -0.49
VPS28-214ENST00000531032 TRIM21P19474 475 aaKnown RBP11.98□□□□□ -0.49
VPS28-214ENST00000531032 ADORA2BP29275 332 aa11.98□□□□□ -0.49
VPS28-214ENST00000531032 ATP5C1P36542 298 aaKnown RBP11.98□□□□□ -0.49
VPS28-214ENST00000531032 PTGER3P43115 390 aa11.98□□□□□ -0.49
VPS28-214ENST00000531032 ENPEPQ07075 957 aa11.98□□□□□ -0.49
VPS28-214ENST00000531032 C10orf76Q5T2E6 689 aa11.98□□□□□ -0.49
VPS28-214ENST00000531032 PEAR1Q5VY43 1037 aaPredicted RBP11.98□□□□□ -0.49
VPS28-214ENST00000531032 NUDT18Q6ZVK8 323 aa11.98□□□□□ -0.49
VPS28-214ENST00000531032 MIB1Q86YT6 1006 aa11.98□□□□□ -0.49
VPS28-214ENST00000531032 TMEFF1Q8IYR6 380 aa11.98□□□□□ -0.49
VPS28-214ENST00000531032 PIGKQ92643 395 aa11.98□□□□□ -0.49
VPS28-214ENST00000531032 NT5C1AQ9BXI3 368 aa11.98□□□□□ -0.49
VPS28-214ENST00000531032 IMPG2Q9BZV3 1241 aa11.98□□□□□ -0.49
VPS28-214ENST00000531032 CYP3A43Q9HB55 503 aa11.98□□□□□ -0.49
VPS28-214ENST00000531032 CD248Q9HCU0 757 aa11.98□□□□□ -0.49
VPS28-214ENST00000531032 MARK1Q9P0L2 795 aa11.98□□□□□ -0.49
VPS28-214ENST00000531032 CIZ1Q9ULV3 898 aaPredicted RBP11.98□□□□□ -0.49
VPS28-214ENST00000531032 PCDHA5Q9Y5H7 936 aa11.98□□□□□ -0.49
VPS28-214ENST00000531032 FAM237AA0A1B0GTK4 181 aa11.97□□□□□ -0.49
VPS28-214ENST00000531032 A0A1W2PQF6 199 aa11.97□□□□□ -0.49
VPS28-214ENST00000531032 NEDD8-MDP1E9PL57 170 aa11.97□□□□□ -0.49
VPS28-214ENST00000531032 GIPC1O14908 333 aa11.97□□□□□ -0.49
VPS28-214ENST00000531032 TRIM24O15164 1050 aa11.97□□□□□ -0.49
VPS28-214ENST00000531032 MAP3K13O43283 966 aa11.97□□□□□ -0.49
VPS28-214ENST00000531032 CILPO75339 1184 aa11.97□□□□□ -0.49
VPS28-214ENST00000531032 KIF20AO95235 890 aa11.97□□□□□ -0.49
VPS28-214ENST00000531032 TRIM49P0CI25 452 aa11.97□□□□□ -0.49
VPS28-214ENST00000531032 TRIM49CP0CI26 452 aa11.97□□□□□ -0.49
VPS28-214ENST00000531032 HOXB2P14652 356 aa11.97□□□□□ -0.49
VPS28-214ENST00000531032 TYRP14679 529 aa11.97□□□□□ -0.49
VPS28-214ENST00000531032 GABRG2P18507 467 aa11.97□□□□□ -0.49
VPS28-214ENST00000531032 CSRP1P21291 193 aaKnown RBP11.97□□□□□ -0.49
VPS28-214ENST00000531032 ACO1P21399 889 aaKnown RBP11.97□□□□□ -0.49
VPS28-214ENST00000531032 NR2F2P24468 414 aa11.97□□□□□ -0.49
VPS28-214ENST00000531032 NTSR1P30989 418 aa11.97□□□□□ -0.49
VPS28-214ENST00000531032 HOXD12P35452 270 aa11.97□□□□□ -0.49
VPS28-214ENST00000531032 DPP6P42658 865 aa11.97□□□□□ -0.49
VPS28-214ENST00000531032 SYKP43405 635 aa11.97□□□□□ -0.49
VPS28-214ENST00000531032 MCCD1P59942 119 aaPredicted RBP11.97□□□□□ -0.49
VPS28-214ENST00000531032 PPP3CAQ08209 521 aa11.97□□□□□ -0.49
VPS28-214ENST00000531032 GOLGA8FQ08AF8 430 aa11.97□□□□□ -0.49
VPS28-214ENST00000531032 GOLGA8DPQ0D2H9 430 aa11.97□□□□□ -0.49
VPS28-214ENST00000531032 LMAN2Q12907 356 aa11.97□□□□□ -0.49
VPS28-214ENST00000531032 TRIM61Q5EBN2 209 aa11.97□□□□□ -0.49
VPS28-214ENST00000531032 SH3PXD2AQ5TCZ1 1133 aa11.97□□□□□ -0.49
VPS28-214ENST00000531032 LYSMD4Q5XG99 296 aa11.97□□□□□ -0.49
VPS28-214ENST00000531032 GRAMD4Q6IC98 578 aa11.97□□□□□ -0.49
VPS28-214ENST00000531032 Q6ZNB5 142 aa11.97□□□□□ -0.49
VPS28-214ENST00000531032 INTS8Q75QN2 995 aaKnown RBP11.97□□□□□ -0.49
VPS28-214ENST00000531032 SYT12Q8IV01 421 aa11.97□□□□□ -0.49
VPS28-214ENST00000531032 TAS1R2Q8TE23 839 aa11.97□□□□□ -0.49
VPS28-214ENST00000531032 CYFIP2Q96F07 1278 aa11.97□□□□□ -0.49
VPS28-214ENST00000531032 SPATA32Q96LK8 384 aa11.97□□□□□ -0.49
VPS28-214ENST00000531032 BBS2Q9BXC9 721 aa11.97□□□□□ -0.49
VPS28-214ENST00000531032 NIF3L1Q9GZT8 377 aa11.97□□□□□ -0.49
VPS28-214ENST00000531032 NMUR1Q9HB89 426 aa11.97□□□□□ -0.49
VPS28-214ENST00000531032 TMEM74BQ9NUR3 256 aa11.97□□□□□ -0.49
VPS28-214ENST00000531032 DNAJC17Q9NVM6 304 aaKnown RBP11.97□□□□□ -0.49
VPS28-214ENST00000531032 MTPAPQ9NVV4 582 aaKnown RBP eCLIP11.97□□□□□ -0.491e-6■■□□□ 14.1
Retrieved 100 of 20,778 RNA–protein pairs in 22.3 ms