RNA–Protein interactions for RNA: ENST00000527897.1

CAPN1-213, Transcript of calpain 1, humanhuman

TSL 3

Gene CAPN1, Length 879 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CAPN1-213ENST00000527897 LSM7Q9UK45 103 aaKnown RBP16.34■□□□□ 0.21
CAPN1-213ENST00000527897 SMG5Q9UPR3 1016 aaKnown RBP16.34■□□□□ 0.21
CAPN1-213ENST00000527897 HMBSP08397 361 aa16.33■□□□□ 0.2
CAPN1-213ENST00000527897 KRT5P13647 590 aa16.33■□□□□ 0.2
CAPN1-213ENST00000527897 BRD2P25440 801 aaKnown RBP16.33■□□□□ 0.2
CAPN1-213ENST00000527897 MTIF2P46199 727 aaKnown RBP16.33■□□□□ 0.2
CAPN1-213ENST00000527897 MARSP56192 900 aaKnown RBP16.33■□□□□ 0.2
CAPN1-213ENST00000527897 BST2Q10589 180 aaKnown RBP16.33■□□□□ 0.2
CAPN1-213ENST00000527897 EFEMP1Q12805 493 aa16.33■□□□□ 0.2
CAPN1-213ENST00000527897 SRSF5Q13243 272 aaKnown RBP16.33■□□□□ 0.2
CAPN1-213ENST00000527897 GAB4Q2WGN9 574 aa16.33■□□□□ 0.2
CAPN1-213ENST00000527897 C2orf27AQ580R0 203 aa16.33■□□□□ 0.2
CAPN1-213ENST00000527897 BTBD8Q5XKL5 378 aa16.33■□□□□ 0.2
CAPN1-213ENST00000527897 TADA2BQ86TJ2 420 aa16.33■□□□□ 0.2
CAPN1-213ENST00000527897 C12orf40Q86WS4 652 aa16.33■□□□□ 0.2
CAPN1-213ENST00000527897 DCLK2Q8N568 766 aa16.33■□□□□ 0.2
CAPN1-213ENST00000527897 UBR7Q8N806 425 aa16.33■□□□□ 0.2
CAPN1-213ENST00000527897 KIAA1958Q8N8K9 716 aa16.33■□□□□ 0.2
CAPN1-213ENST00000527897 MLKLQ8NB16 471 aa16.33■□□□□ 0.2
CAPN1-213ENST00000527897 RBBP8NLQ8NC74 664 aaPredicted RBP16.33■□□□□ 0.2
CAPN1-213ENST00000527897 LMO3Q8TAP4 145 aa16.33■□□□□ 0.2
CAPN1-213ENST00000527897 NDRG1Q92597 394 aaKnown RBP16.33■□□□□ 0.2
CAPN1-213ENST00000527897 EZH1Q92800 747 aaPredicted RBP16.33■□□□□ 0.2
CAPN1-213ENST00000527897 OTUB2Q96DC9 234 aa16.33■□□□□ 0.2
CAPN1-213ENST00000527897 IPO9Q96P70 1041 aaKnown RBP16.33■□□□□ 0.2
CAPN1-213ENST00000527897 ULBP1Q9BZM6 244 aa16.33■□□□□ 0.2
CAPN1-213ENST00000527897 RAB23Q9ULC3 237 aa16.33■□□□□ 0.2
CAPN1-213ENST00000527897 USP3Q9Y6I4 520 aa16.33■□□□□ 0.2
CAPN1-213ENST00000527897 M0QYV0 167 aa16.32■□□□□ 0.2
CAPN1-213ENST00000527897 RNF225M0QZC1 329 aaPredicted RBP16.32■□□□□ 0.2
CAPN1-213ENST00000527897 O00370 1275 aa16.32■□□□□ 0.2
CAPN1-213ENST00000527897 PIK3R2O00459 728 aa16.32■□□□□ 0.2
CAPN1-213ENST00000527897 XPO1O14980 1071 aaKnown RBP16.32■□□□□ 0.2
CAPN1-213ENST00000527897 LILRB5O75023 590 aa16.32■□□□□ 0.2
CAPN1-213ENST00000527897 ZBED1O96006 694 aa16.32■□□□□ 0.2
CAPN1-213ENST00000527897 PAEPP09466 180 aa16.32■□□□□ 0.2
CAPN1-213ENST00000527897 LCP1P13796 627 aa16.32■□□□□ 0.2
CAPN1-213ENST00000527897 PSEN1P49768 467 aa16.32■□□□□ 0.2
CAPN1-213ENST00000527897 RGS7P49802 495 aa16.32■□□□□ 0.2
CAPN1-213ENST00000527897 YWHAGP61981 247 aaKnown RBP eCLIP16.32■□□□□ 0.2
CAPN1-213ENST00000527897 GAD2Q05329 585 aa16.32■□□□□ 0.2
CAPN1-213ENST00000527897 ADIGQ0VDE8 80 aa16.32■□□□□ 0.2
CAPN1-213ENST00000527897 DPCR1Q3MIW9 517 aa16.32■□□□□ 0.2
CAPN1-213ENST00000527897 HSP90AA4PQ58FG1 418 aa16.32■□□□□ 0.2
CAPN1-213ENST00000527897 TPGS1Q6ZTW0 290 aa16.32■□□□□ 0.2
CAPN1-213ENST00000527897 LONP2Q86WA8 852 aa16.32■□□□□ 0.2
CAPN1-213ENST00000527897 TMEM25Q86YD3 366 aa16.32■□□□□ 0.2
CAPN1-213ENST00000527897 SFTPA1Q8IWL2 248 aa16.32■□□□□ 0.2
CAPN1-213ENST00000527897 KIAA2013Q8IYS2 634 aa16.32■□□□□ 0.2
CAPN1-213ENST00000527897 SIX6OS1Q8N1H7 587 aa16.32■□□□□ 0.2
CAPN1-213ENST00000527897 ARHGAP18Q8N392 663 aa16.32■□□□□ 0.2
CAPN1-213ENST00000527897 SUMF1Q8NBK3 374 aa16.32■□□□□ 0.2
CAPN1-213ENST00000527897 TFAP2BQ92481 460 aa16.32■□□□□ 0.2
CAPN1-213ENST00000527897 RUBCNQ92622 972 aa16.32■□□□□ 0.2
CAPN1-213ENST00000527897 HHIPQ96QV1 700 aa16.32■□□□□ 0.2
CAPN1-213ENST00000527897 PNKPQ96T60 521 aa16.32■□□□□ 0.2
CAPN1-213ENST00000527897 UBXN6Q9BZV1 441 aa16.32■□□□□ 0.2
CAPN1-213ENST00000527897 UBE2TQ9NPD8 197 aaPredicted RBP16.32■□□□□ 0.2
CAPN1-213ENST00000527897 ARHGEF4Q9NR80 690 aa16.32■□□□□ 0.2
CAPN1-213ENST00000527897 SPHK2Q9NRA0 654 aa16.32■□□□□ 0.2
CAPN1-213ENST00000527897 KIAA1257Q9ULG3 409 aa16.32■□□□□ 0.2
CAPN1-213ENST00000527897 EP300Q09472 2414 aaPredicted RBP16.31■□□□□ 0.2
CAPN1-213ENST00000527897 ANTXRLA6NF34 631 aa16.31■□□□□ 0.2
CAPN1-213ENST00000527897 PAPSS2O95340 614 aaPredicted RBP16.31■□□□□ 0.2
CAPN1-213ENST00000527897 APODP05090 189 aa16.31■□□□□ 0.2
CAPN1-213ENST00000527897 PLA2G4AP47712 749 aa16.31■□□□□ 0.2
CAPN1-213ENST00000527897 GCNT1Q02742 428 aa16.31■□□□□ 0.2
CAPN1-213ENST00000527897 RAB41Q5JT25 222 aa16.31■□□□□ 0.2
CAPN1-213ENST00000527897 CEP68Q76N32 757 aa16.31■□□□□ 0.2
CAPN1-213ENST00000527897 BHMTQ93088 406 aa16.31■□□□□ 0.2
CAPN1-213ENST00000527897 ACDQ96AP0 544 aa16.31■□□□□ 0.2
CAPN1-213ENST00000527897 GBP4Q96PP9 640 aa16.31■□□□□ 0.2
CAPN1-213ENST00000527897 MED15Q96RN5 788 aa16.31■□□□□ 0.2
CAPN1-213ENST00000527897 CDK5RAP1Q96SZ6 601 aaKnown RBP16.31■□□□□ 0.2
CAPN1-213ENST00000527897 EPC1Q9H2F5 836 aa16.31■□□□□ 0.2
CAPN1-213ENST00000527897 LMBRD1Q9NUN5 540 aa16.31■□□□□ 0.2
CAPN1-213ENST00000527897 CLIC5Q9NZA1 410 aa16.31■□□□□ 0.2
CAPN1-213ENST00000527897 KIAA1549LQ6ZVL6 1849 aa16.31■□□□□ 0.2
CAPN1-213ENST00000527897 NEDD8-MDP1E9PL57 170 aa16.3■□□□□ 0.2
CAPN1-213ENST00000527897 K7EQS6 105 aa16.3■□□□□ 0.2
CAPN1-213ENST00000527897 HRO43593 1189 aa16.3■□□□□ 0.2
CAPN1-213ENST00000527897 KAT7O95251 611 aa16.3■□□□□ 0.2
CAPN1-213ENST00000527897 SETSIPP0DME0 302 aa16.3■□□□□ 0.2
CAPN1-213ENST00000527897 TIE1P35590 1138 aa16.3■□□□□ 0.2
CAPN1-213ENST00000527897 USP8P40818 1118 aa16.3■□□□□ 0.2
CAPN1-213ENST00000527897 MESP2Q0VG99 397 aa16.3■□□□□ 0.2
CAPN1-213ENST00000527897 SIM2Q14190 667 aaPredicted RBP16.3■□□□□ 0.2
CAPN1-213ENST00000527897 DMC1Q14565 340 aa16.3■□□□□ 0.2
CAPN1-213ENST00000527897 GJB7Q6PEY0 223 aa16.3■□□□□ 0.2
CAPN1-213ENST00000527897 KLHDC10Q6PID8 442 aa16.3■□□□□ 0.2
CAPN1-213ENST00000527897 LCLAT1Q6UWP7 414 aa16.3■□□□□ 0.2
CAPN1-213ENST00000527897 HTR3DQ70Z44 454 aa16.3■□□□□ 0.2
CAPN1-213ENST00000527897 CCDC33Q8N5R6 958 aa16.3■□□□□ 0.2
CAPN1-213ENST00000527897 CCDC26Q8TAB7 109 aa16.3■□□□□ 0.2
CAPN1-213ENST00000527897 SECISBP2LQ93073 1101 aaKnown RBP16.3■□□□□ 0.2
CAPN1-213ENST00000527897 KREMEN1Q96MU8 473 aa16.3■□□□□ 0.2
CAPN1-213ENST00000527897 BBS2Q9BXC9 721 aa16.3■□□□□ 0.2
CAPN1-213ENST00000527897 MARCH2Q9P0N8 246 aa16.3■□□□□ 0.2
CAPN1-213ENST00000527897 DACH1Q9UI36 760 aa16.3■□□□□ 0.2
CAPN1-213ENST00000527897 STRIP2Q9ULQ0 834 aa16.3■□□□□ 0.2
Retrieved 100 of 20,778 RNA–protein pairs in 36.5 ms