RNA–Protein interactions for RNA: ENST00000515753.1

HERC4-215, Transcript of HECT and RLD domain containing E3 ubiquitin protein ligase 4, humanhuman

TSL 2

Gene HERC4, Length 589 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HERC4-215ENST00000515753 C4orf46Q504U0 113 aa3.87□□□□□ -1.79
HERC4-215ENST00000515753 CACHD1Q5VU97 1274 aa3.87□□□□□ -1.79
HERC4-215ENST00000515753 PLAG1Q6DJT9 500 aa3.87□□□□□ -1.79
HERC4-215ENST00000515753 KIRREL2Q6UWL6 708 aa3.87□□□□□ -1.79
HERC4-215ENST00000515753 TRIM72Q6ZMU5 477 aa3.87□□□□□ -1.79
HERC4-215ENST00000515753 ZNF517Q6ZMY9 492 aaPredicted RBP3.87□□□□□ -1.79
HERC4-215ENST00000515753 UNC13DQ70J99 1090 aa3.87□□□□□ -1.79
HERC4-215ENST00000515753 KRT28Q7Z3Y7 464 aa3.87□□□□□ -1.79
HERC4-215ENST00000515753 LINC01465Q8N7H1 131 aa3.87□□□□□ -1.79
HERC4-215ENST00000515753 RNF152Q8N8N0 203 aa3.87□□□□□ -1.79
HERC4-215ENST00000515753 TMEM171Q8WVE6 324 aa3.87□□□□□ -1.79
HERC4-215ENST00000515753 CTHRC1Q96CG8 243 aa3.87□□□□□ -1.79
HERC4-215ENST00000515753 SNX18Q96RF0 628 aa3.87□□□□□ -1.79
HERC4-215ENST00000515753 PRR25Q96S07 402 aa3.87□□□□□ -1.79
HERC4-215ENST00000515753 MACROD1Q9BQ69 325 aa3.87□□□□□ -1.79
HERC4-215ENST00000515753 UBA5Q9GZZ9 404 aa3.87□□□□□ -1.79
HERC4-215ENST00000515753 VPS16Q9H269 839 aa3.87□□□□□ -1.79
HERC4-215ENST00000515753 PDGFCQ9NRA1 345 aa3.87□□□□□ -1.79
HERC4-215ENST00000515753 ZNF212Q9UDV6 495 aa3.87□□□□□ -1.79
HERC4-215ENST00000515753 HDAC9Q9UKV0 1011 aa3.87□□□□□ -1.79
HERC4-215ENST00000515753 DRG1Q9Y295 367 aaKnown RBP3.87□□□□□ -1.79
HERC4-215ENST00000515753 SMIM35A0A1B0GVV1 85 aa3.86□□□□□ -1.79
HERC4-215ENST00000515753 A0A1W2PPC4 97 aa3.86□□□□□ -1.79
HERC4-215ENST00000515753 HMGB1P1B2RPK0 211 aaPredicted RBP3.86□□□□□ -1.79
HERC4-215ENST00000515753 PSMD9O00233 223 aa3.86□□□□□ -1.79
HERC4-215ENST00000515753 AREL1O15033 823 aa3.86□□□□□ -1.79
HERC4-215ENST00000515753 ADAMTS3O15072 1205 aa3.86□□□□□ -1.79
HERC4-215ENST00000515753 THAP12O43422 761 aa3.86□□□□□ -1.79
HERC4-215ENST00000515753 KCNQ3O43525 872 aa3.86□□□□□ -1.79
HERC4-215ENST00000515753 PMPCBO75439 489 aa3.86□□□□□ -1.79
HERC4-215ENST00000515753 RASAL1O95294 804 aa3.86□□□□□ -1.79
HERC4-215ENST00000515753 TUBB4AP04350 444 aa3.86□□□□□ -1.79
HERC4-215ENST00000515753 TPH1P17752 444 aa3.86□□□□□ -1.79
HERC4-215ENST00000515753 TKTP29401 623 aaKnown RBP3.86□□□□□ -1.79
HERC4-215ENST00000515753 NR4A2P43354 598 aa3.86□□□□□ -1.79
HERC4-215ENST00000515753 MTHFSP49914 203 aa3.86□□□□□ -1.79
HERC4-215ENST00000515753 POLGP54098 1239 aaPredicted RBP3.86□□□□□ -1.79
HERC4-215ENST00000515753 PDE1AP54750 535 aa3.86□□□□□ -1.79
HERC4-215ENST00000515753 HOXA4Q00056 320 aaPredicted RBP3.86□□□□□ -1.79
HERC4-215ENST00000515753 E2F1Q01094 437 aa3.86□□□□□ -1.79
HERC4-215ENST00000515753 SAFBQ15424 915 aaKnown RBP eCLIP3.86□□□□□ -1.79
HERC4-215ENST00000515753 LY6KQ17RY6 165 aa3.86□□□□□ -1.79
HERC4-215ENST00000515753 PCID2Q5JVF3 399 aa3.86□□□□□ -1.79
HERC4-215ENST00000515753 DENND2CQ68D51 928 aa3.86□□□□□ -1.79
HERC4-215ENST00000515753 USP17L6PQ6QN14 398 aa3.86□□□□□ -1.79
HERC4-215ENST00000515753 NAPRTQ6XQN6 538 aa3.86□□□□□ -1.79
HERC4-215ENST00000515753 CATSPERGQ6ZRH7 1159 aa3.86□□□□□ -1.79
HERC4-215ENST00000515753 PTCHD4Q6ZW05 846 aa3.86□□□□□ -1.79
HERC4-215ENST00000515753 KCTD20Q7Z5Y7 419 aa3.86□□□□□ -1.79
HERC4-215ENST00000515753 CHSY1Q86X52 802 aa3.86□□□□□ -1.79
HERC4-215ENST00000515753 SIRT6Q8N6T7 355 aa3.86□□□□□ -1.79
HERC4-215ENST00000515753 PNLDC1Q8NA58 520 aaKnown RBP3.86□□□□□ -1.79
HERC4-215ENST00000515753 PJA1Q8NG27 643 aa3.86□□□□□ -1.79
HERC4-215ENST00000515753 XAGE5Q8WWM1 108 aa3.86□□□□□ -1.79
HERC4-215ENST00000515753 IQCDQ96DY2 449 aa3.86□□□□□ -1.79
HERC4-215ENST00000515753 DAZAP1Q96EP5 407 aaKnown RBP3.86□□□□□ -1.79
HERC4-215ENST00000515753 FAM227BQ96M60 508 aa3.86□□□□□ -1.79
HERC4-215ENST00000515753 C5orf34Q96MH7 638 aa3.86□□□□□ -1.79
HERC4-215ENST00000515753 LENG8Q96PV6 779 aaPredicted RBP3.86□□□□□ -1.79
HERC4-215ENST00000515753 AMFRQ9UKV5 643 aa3.86□□□□□ -1.79
HERC4-215ENST00000515753 RIMKLBQ9ULI2 386 aa3.86□□□□□ -1.79
HERC4-215ENST00000515753 USP22Q9UPT9 525 aa3.86□□□□□ -1.79
HERC4-215ENST00000515753 CNTNAP2Q9UHC6 1331 aa3.86□□□□□ -1.79
HERC4-215ENST00000515753 COL15A1P39059 1388 aa3.86□□□□□ -1.79
HERC4-215ENST00000515753 UNC13AQ9UPW8 1703 aa3.85□□□□□ -1.79
HERC4-215ENST00000515753 BTBD19C9JJ37 291 aa3.85□□□□□ -1.79
HERC4-215ENST00000515753 RAB27BO00194 218 aa3.85□□□□□ -1.79
HERC4-215ENST00000515753 TMPRSS11DO60235 418 aa3.85□□□□□ -1.79
HERC4-215ENST00000515753 PQBP1O60828 265 aaKnown RBP3.85□□□□□ -1.79
HERC4-215ENST00000515753 VNN1O95497 513 aa3.85□□□□□ -1.79
HERC4-215ENST00000515753 CHRM5P08912 532 aaPredicted RBP3.85□□□□□ -1.79
HERC4-215ENST00000515753 PARP1P09874 1014 aaKnown RBP3.85□□□□□ -1.79
HERC4-215ENST00000515753 RBL1P28749 1068 aa3.85□□□□□ -1.79
HERC4-215ENST00000515753 SLC5A2P31639 672 aa3.85□□□□□ -1.79
HERC4-215ENST00000515753 CCKBRP32239 447 aa3.85□□□□□ -1.79
HERC4-215ENST00000515753 PIK3CBP42338 1070 aa3.85□□□□□ -1.79
HERC4-215ENST00000515753 PGDP52209 483 aa3.85□□□□□ -1.79
HERC4-215ENST00000515753 COPAP53621 1224 aa3.85□□□□□ -1.79
HERC4-215ENST00000515753 IFIT5Q13325 482 aaKnown RBP3.85□□□□□ -1.79
HERC4-215ENST00000515753 ST3GAL2Q16842 350 aa3.85□□□□□ -1.79
HERC4-215ENST00000515753 RNASE12Q5GAN4 147 aaKnown RBP3.85□□□□□ -1.79
HERC4-215ENST00000515753 KRT73Q86Y46 540 aa3.85□□□□□ -1.79
HERC4-215ENST00000515753 MBD3L2Q8NHZ7 208 aaPredicted RBP3.85□□□□□ -1.79
HERC4-215ENST00000515753 SLC39A13Q96H72 371 aa3.85□□□□□ -1.79
HERC4-215ENST00000515753 WDYHV1Q96HA8 205 aa3.85□□□□□ -1.79
HERC4-215ENST00000515753 EIF2AQ9BY44 585 aaKnown RBP3.85□□□□□ -1.79
HERC4-215ENST00000515753 PRSS22Q9GZN4 317 aa3.85□□□□□ -1.79
HERC4-215ENST00000515753 STARD7Q9NQZ5 370 aa3.85□□□□□ -1.79
HERC4-215ENST00000515753 MYO1AQ9UBC5 1043 aa3.85□□□□□ -1.79
HERC4-215ENST00000515753 DNAJB11Q9UBS4 358 aa3.85□□□□□ -1.79
HERC4-215ENST00000515753 ZNF580Q9UK33 172 aa3.85□□□□□ -1.79
HERC4-215ENST00000515753 SNX13Q9Y5W8 968 aa3.85□□□□□ -1.79
HERC4-215ENST00000515753 A0A087WZ62 844 aa3.84□□□□□ -1.79
HERC4-215ENST00000515753 POC1B-GALNT4F8VUJ3 575 aa3.84□□□□□ -1.79
HERC4-215ENST00000515753 PMM2O15305 246 aa3.84□□□□□ -1.79
HERC4-215ENST00000515753 SPRY2O43597 315 aa3.84□□□□□ -1.79
HERC4-215ENST00000515753 RGS10O43665 173 aa3.84□□□□□ -1.79
HERC4-215ENST00000515753 USP1O94782 785 aa3.84□□□□□ -1.79
HERC4-215ENST00000515753 FGAP02671 866 aa3.84□□□□□ -1.79
HERC4-215ENST00000515753 SNHG28P0DPA3 235 aa3.84□□□□□ -1.79
Retrieved 100 of 20,778 RNA–protein pairs in 14.2 ms