RNA–Protein interactions for RNA: ENST00000515516.1

TCOF1-215, Transcript of treacle ribosome biogenesis factor 1, humanhuman

TSL 5

Gene TCOF1, Length 661 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TCOF1-215ENST00000515516 KLHL10Q6JEL2 608 aa14.39□□□□□ -0.11
TCOF1-215ENST00000515516 KLHDC10Q6PID8 442 aa14.39□□□□□ -0.11
TCOF1-215ENST00000515516 HTR3DQ70Z44 454 aa14.39□□□□□ -0.11
TCOF1-215ENST00000515516 CCDC186Q7Z3E2 898 aa14.39□□□□□ -0.11
TCOF1-215ENST00000515516 KBTBD6Q86V97 674 aa14.39□□□□□ -0.11
TCOF1-215ENST00000515516 ZC3H3Q8IXZ2 948 aaKnown RBP14.39□□□□□ -0.11
TCOF1-215ENST00000515516 CCDC33Q8N5R6 958 aa14.39□□□□□ -0.11
TCOF1-215ENST00000515516 NAT16Q8N8M0 369 aa14.39□□□□□ -0.11
TCOF1-215ENST00000515516 SLC4A11Q8NBS3 891 aa14.39□□□□□ -0.11
TCOF1-215ENST00000515516 XPO6Q96QU8 1125 aaKnown RBP14.39□□□□□ -0.11
TCOF1-215ENST00000515516 UBXN6Q9BZV1 441 aa14.39□□□□□ -0.11
TCOF1-215ENST00000515516 WDR35Q9P2L0 1181 aa14.39□□□□□ -0.11
TCOF1-215ENST00000515516 MAN1B1Q9UKM7 699 aa14.39□□□□□ -0.11
TCOF1-215ENST00000515516 MMP17Q9ULZ9 603 aa14.39□□□□□ -0.11
TCOF1-215ENST00000515516 VPS13AQ96RL7 3174 aa14.39□□□□□ -0.11
TCOF1-215ENST00000515516 BICDL2A1A5D9 508 aa14.38□□□□□ -0.11
TCOF1-215ENST00000515516 TGM1P22735 817 aa14.38□□□□□ -0.11
TCOF1-215ENST00000515516 ARHGAP17Q68EM7 881 aa14.38□□□□□ -0.11
TCOF1-215ENST00000515516 PRR23CQ6ZRP0 262 aa14.38□□□□□ -0.11
TCOF1-215ENST00000515516 TRMT11Q7Z4G4 463 aaKnown RBP14.38□□□□□ -0.11
TCOF1-215ENST00000515516 C11orf74Q86VG3 221 aa14.38□□□□□ -0.11
TCOF1-215ENST00000515516 C12orf40Q86WS4 652 aa14.38□□□□□ -0.11
TCOF1-215ENST00000515516 TMEM25Q86YD3 366 aa14.38□□□□□ -0.11
TCOF1-215ENST00000515516 C12orf50Q8NA57 414 aaPredicted RBP14.38□□□□□ -0.11
TCOF1-215ENST00000515516 ANKRD52Q8NB46 1076 aa14.38□□□□□ -0.11
TCOF1-215ENST00000515516 ARID3AQ99856 593 aa14.38□□□□□ -0.11
TCOF1-215ENST00000515516 ARRDC1-AS1Q9H2J1 176 aa14.38□□□□□ -0.11
TCOF1-215ENST00000515516 NMUR1Q9HB89 426 aa14.38□□□□□ -0.11
TCOF1-215ENST00000515516 POLMQ9NP87 494 aaPredicted RBP14.38□□□□□ -0.11
TCOF1-215ENST00000515516 MTPAPQ9NVV4 582 aaKnown RBP eCLIP14.38□□□□□ -0.114e-6■□□□□ 11.1
TCOF1-215ENST00000515516 OSER1Q9NX31 292 aa14.38□□□□□ -0.11
TCOF1-215ENST00000515516 CLIC5Q9NZA1 410 aa14.38□□□□□ -0.11
TCOF1-215ENST00000515516 HESX1Q9UBX0 185 aa14.38□□□□□ -0.11
TCOF1-215ENST00000515516 ZNF510Q9Y2H8 683 aa14.38□□□□□ -0.11
TCOF1-215ENST00000515516 COQ4Q9Y3A0 265 aa14.38□□□□□ -0.11
TCOF1-215ENST00000515516 DYNC1LI1Q9Y6G9 523 aaKnown RBP14.38□□□□□ -0.11
TCOF1-215ENST00000515516 CFAP54Q96N23 3096 aa14.38□□□□□ -0.11
TCOF1-215ENST00000515516 A0A0A0MRY4 1105 aa14.37□□□□□ -0.11
TCOF1-215ENST00000515516 ZBTB24O43167 697 aaPredicted RBP14.37□□□□□ -0.11
TCOF1-215ENST00000515516 KLF8O95600 359 aaPredicted RBP14.37□□□□□ -0.11
TCOF1-215ENST00000515516 CD19P15391 556 aa14.37□□□□□ -0.11
TCOF1-215ENST00000515516 GBP1P32455 592 aa14.37□□□□□ -0.11
TCOF1-215ENST00000515516 COG7P83436 770 aa14.37□□□□□ -0.11
TCOF1-215ENST00000515516 LRMPQ12912 555 aa14.37□□□□□ -0.11
TCOF1-215ENST00000515516 CRY1Q16526 586 aa14.37□□□□□ -0.11
TCOF1-215ENST00000515516 SGO2Q562F6 1265 aa14.37□□□□□ -0.11
TCOF1-215ENST00000515516 ANO7Q6IWH7 933 aa14.37□□□□□ -0.11
TCOF1-215ENST00000515516 TPGS1Q6ZTW0 290 aa14.37□□□□□ -0.11
TCOF1-215ENST00000515516 RSRC2Q7L4I2 434 aaKnown RBP14.37□□□□□ -0.11
TCOF1-215ENST00000515516 MIB1Q86YT6 1006 aa14.37□□□□□ -0.11
TCOF1-215ENST00000515516 ZNF276Q8N554 614 aa14.37□□□□□ -0.11
TCOF1-215ENST00000515516 ALLCQ8N6M5 410 aa14.37□□□□□ -0.11
TCOF1-215ENST00000515516 TXNDC5Q8NBS9 432 aaKnown RBP14.37□□□□□ -0.11
TCOF1-215ENST00000515516 NETO1Q8TDF5 533 aa14.37□□□□□ -0.11
TCOF1-215ENST00000515516 KCNV2Q8TDN2 545 aa14.37□□□□□ -0.11
TCOF1-215ENST00000515516 NELFBQ8WX92 580 aa14.37□□□□□ -0.11
TCOF1-215ENST00000515516 SLC35C1Q96A29 364 aa14.37□□□□□ -0.11
TCOF1-215ENST00000515516 ZC3H10Q96K80 434 aaKnown RBP14.37□□□□□ -0.11
TCOF1-215ENST00000515516 RTKNQ9BST9 563 aa14.37□□□□□ -0.11
TCOF1-215ENST00000515516 BBS2Q9BXC9 721 aa14.37□□□□□ -0.11
TCOF1-215ENST00000515516 RASAL2Q9UJF2 1139 aa14.37□□□□□ -0.11
TCOF1-215ENST00000515516 NUDT5Q9UKK9 219 aa14.37□□□□□ -0.11
TCOF1-215ENST00000515516 KIAA1257Q9ULG3 409 aa14.37□□□□□ -0.11
TCOF1-215ENST00000515516 STRIP2Q9ULQ0 834 aa14.37□□□□□ -0.11
TCOF1-215ENST00000515516 CIZ1Q9ULV3 898 aaPredicted RBP14.37□□□□□ -0.11
TCOF1-215ENST00000515516 PCDHGA5Q9Y5G8 931 aa14.37□□□□□ -0.11
TCOF1-215ENST00000515516 USP3Q9Y6I4 520 aa14.37□□□□□ -0.11
TCOF1-215ENST00000515516 GPR179Q6PRD1 2367 aa14.37□□□□□ -0.11
TCOF1-215ENST00000515516 FANCMQ8IYD8 2048 aa14.36□□□□□ -0.11
TCOF1-215ENST00000515516 OBSL1O75147 1896 aa14.36□□□□□ -0.11
TCOF1-215ENST00000515516 KIF26AQ9ULI4 1882 aaPredicted RBP14.36□□□□□ -0.11
TCOF1-215ENST00000515516 LOC105378220A0A1B0GUY1 285 aaPredicted RBP14.36□□□□□ -0.11
TCOF1-215ENST00000515516 NEDD8-MDP1E9PL57 170 aa14.36□□□□□ -0.11
TCOF1-215ENST00000515516 MDM4O15151 490 aa14.36□□□□□ -0.11
TCOF1-215ENST00000515516 TULP3O75386 442 aa14.36□□□□□ -0.11
TCOF1-215ENST00000515516 EPN2O95208 641 aa14.36□□□□□ -0.11
TCOF1-215ENST00000515516 FGFR1OPO95684 399 aaKnown RBP14.36□□□□□ -0.11
TCOF1-215ENST00000515516 GNA14O95837 355 aa14.36□□□□□ -0.11
TCOF1-215ENST00000515516 FMO5P49326 533 aa14.36□□□□□ -0.11
TCOF1-215ENST00000515516 ATXN1P54253 815 aaKnown RBP14.36□□□□□ -0.11
TCOF1-215ENST00000515516 BCAT1P54687 386 aa14.36□□□□□ -0.11
TCOF1-215ENST00000515516 GOLGA7BQ2TAP0 167 aa14.36□□□□□ -0.11
TCOF1-215ENST00000515516 PLK5Q496M5 336 aa14.36□□□□□ -0.11
TCOF1-215ENST00000515516 AASDHQ4L235 1098 aaPredicted RBP14.36□□□□□ -0.11
TCOF1-215ENST00000515516 C10orf76Q5T2E6 689 aa14.36□□□□□ -0.11
TCOF1-215ENST00000515516 GRAMD4Q6IC98 578 aa14.36□□□□□ -0.11
TCOF1-215ENST00000515516 SDE2Q6IQ49 451 aa14.36□□□□□ -0.11
TCOF1-215ENST00000515516 SCD5Q86SK9 330 aa14.36□□□□□ -0.11
TCOF1-215ENST00000515516 PIGZQ86VD9 579 aa14.36□□□□□ -0.11
TCOF1-215ENST00000515516 PGBD3Q8N328 593 aa14.36□□□□□ -0.11
TCOF1-215ENST00000515516 IL17RCQ8NAC3 791 aa14.36□□□□□ -0.11
TCOF1-215ENST00000515516 WBP2Q969T9 261 aa14.36□□□□□ -0.11
TCOF1-215ENST00000515516 CNOT6LQ96LI5 555 aaKnown RBP14.36□□□□□ -0.11
TCOF1-215ENST00000515516 NT5C1BQ96P26 610 aa14.36□□□□□ -0.11
TCOF1-215ENST00000515516 DCLK3Q9C098 648 aa14.36□□□□□ -0.11
TCOF1-215ENST00000515516 LRRC4Q9HBW1 653 aa14.36□□□□□ -0.11
TCOF1-215ENST00000515516 DNAJC17Q9NVM6 304 aaKnown RBP14.36□□□□□ -0.11
TCOF1-215ENST00000515516 BCCIPQ9P287 314 aaKnown RBP eCLIP14.36□□□□□ -0.11
TCOF1-215ENST00000515516 CTNND2Q9UQB3 1225 aa14.36□□□□□ -0.11
TCOF1-215ENST00000515516 OTOGLQ3ZCN5 2332 aa14.36□□□□□ -0.11
Retrieved 100 of 20,778 RNA–protein pairs in 10.7 ms