RNA–Protein interactions for RNA: ENST00000513346.5

TCOF1-211, Transcript of treacle ribosome biogenesis factor 1, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene TCOF1, Length 4,646 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TCOF1-211ENST00000513346 GLIS3Q8NEA6 775 aa11.61□□□□□ -0.55
TCOF1-211ENST00000513346 ZC3H11BA0A1B0GUI2 810 aaPredicted RBP11.61□□□□□ -0.55
TCOF1-211ENST00000513346 CFAP99D6REC4 459 aa11.61□□□□□ -0.55
TCOF1-211ENST00000513346 HLA-DRAP01903 254 aa11.61□□□□□ -0.55
TCOF1-211ENST00000513346 ICAM1P05362 532 aa11.61□□□□□ -0.55
TCOF1-211ENST00000513346 CTSHP09668 335 aa11.61□□□□□ -0.55
TCOF1-211ENST00000513346 RPL10AP62906 217 aaKnown RBP11.61□□□□□ -0.55
TCOF1-211ENST00000513346 CNPY1Q3B7I2 92 aa11.61□□□□□ -0.55
TCOF1-211ENST00000513346 KBTBD12Q3ZCT8 623 aa11.61□□□□□ -0.55
TCOF1-211ENST00000513346 C2CD6Q53TS8 623 aa11.61□□□□□ -0.55
TCOF1-211ENST00000513346 HABP4Q5JVS0 413 aaKnown RBP11.61□□□□□ -0.55
TCOF1-211ENST00000513346 ACSF2Q96CM8 615 aaPredicted RBP11.61□□□□□ -0.55
TCOF1-211ENST00000513346 PI4K2AQ9BTU6 479 aa11.61□□□□□ -0.55
TCOF1-211ENST00000513346 KATNAL1Q9BW62 490 aa11.61□□□□□ -0.55
TCOF1-211ENST00000513346 DDX4Q9NQI0 724 aaKnown RBP11.61□□□□□ -0.55
TCOF1-211ENST00000513346 RSL24D1Q9UHA3 163 aaKnown RBP11.61□□□□□ -0.55
TCOF1-211ENST00000513346 RABGEF1Q9UJ41 708 aa11.61□□□□□ -0.55
TCOF1-211ENST00000513346 ANGPTL3Q9Y5C1 460 aa11.61□□□□□ -0.55
TCOF1-211ENST00000513346 WNT7AO00755 349 aa11.61□□□□□ -0.55
TCOF1-211ENST00000513346 DLGAP3O95886 979 aa11.61□□□□□ -0.55
TCOF1-211ENST00000513346 RARBP10826 455 aa11.61□□□□□ -0.55
TCOF1-211ENST00000513346 CNTFP26441 200 aa11.61□□□□□ -0.55
TCOF1-211ENST00000513346 ABCE1P61221 599 aaKnown RBP11.61□□□□□ -0.55
TCOF1-211ENST00000513346 SLC25A3Q00325 362 aa11.61□□□□□ -0.55
TCOF1-211ENST00000513346 CLEC16AQ2KHT3 1053 aa11.61□□□□□ -0.55
TCOF1-211ENST00000513346 PID1Q7Z2X4 250 aa11.61□□□□□ -0.55
TCOF1-211ENST00000513346 CCDC103Q8IW40 242 aa11.61□□□□□ -0.55
TCOF1-211ENST00000513346 NLGN2Q8NFZ4 835 aa11.61□□□□□ -0.55
TCOF1-211ENST00000513346 UCMAQ8WVF2 138 aa11.61□□□□□ -0.55
TCOF1-211ENST00000513346 ALG3Q92685 438 aa11.61□□□□□ -0.55
TCOF1-211ENST00000513346 COPS7BQ9H9Q2 264 aaPredicted RBP11.61□□□□□ -0.55
TCOF1-211ENST00000513346 USP1O94782 785 aa11.61□□□□□ -0.55
TCOF1-211ENST00000513346 PSMA4P25789 261 aaKnown RBP11.61□□□□□ -0.55
TCOF1-211ENST00000513346 TTKP33981 857 aa11.61□□□□□ -0.55
TCOF1-211ENST00000513346 SHMT1P34896 483 aa11.61□□□□□ -0.55
TCOF1-211ENST00000513346 MYBPC2Q14324 1141 aa11.61□□□□□ -0.55
TCOF1-211ENST00000513346 AASDHQ4L235 1098 aaPredicted RBP11.61□□□□□ -0.55
TCOF1-211ENST00000513346 PPP1R14BQ96C90 147 aa11.61□□□□□ -0.55
TCOF1-211ENST00000513346 TNIP3Q96KP6 325 aa11.61□□□□□ -0.55
TCOF1-211ENST00000513346 GPAMQ9HCL2 828 aa11.61□□□□□ -0.55
TCOF1-211ENST00000513346 ERVK-5Q9HDB9 667 aa11.61□□□□□ -0.55
TCOF1-211ENST00000513346 KCNQ5Q9NR82 932 aa11.61□□□□□ -0.55
TCOF1-211ENST00000513346 FBXO6Q9NRD1 293 aaPredicted RBP11.61□□□□□ -0.55
TCOF1-211ENST00000513346 LRRC42Q9Y546 428 aa11.61□□□□□ -0.55
TCOF1-211ENST00000513346 E2F8A0AVK6 867 aa11.6□□□□□ -0.55
TCOF1-211ENST00000513346 TRPC5OSA6NMA1 111 aa11.6□□□□□ -0.55
TCOF1-211ENST00000513346 GFAPP14136 432 aa11.6□□□□□ -0.55
TCOF1-211ENST00000513346 ME2P23368 584 aa11.6□□□□□ -0.55
TCOF1-211ENST00000513346 CLK1P49759 484 aaKnown RBP11.6□□□□□ -0.55
TCOF1-211ENST00000513346 FAAP100Q0VG06 881 aa11.6□□□□□ -0.55
TCOF1-211ENST00000513346 ZBTB41Q5SVQ8 909 aa11.6□□□□□ -0.55
TCOF1-211ENST00000513346 TTC27Q6P3X3 843 aa11.6□□□□□ -0.55
TCOF1-211ENST00000513346 TMC5Q6UXY8 1006 aa11.6□□□□□ -0.55
TCOF1-211ENST00000513346 PPP1R3FQ6ZSY5 799 aaPredicted RBP11.6□□□□□ -0.55
TCOF1-211ENST00000513346 PTPRN2Q92932 1015 aa11.6□□□□□ -0.55
TCOF1-211ENST00000513346 TAS2R14Q9NYV8 317 aa11.6□□□□□ -0.55
TCOF1-211ENST00000513346 CYTH3O43739 400 aa11.6□□□□□ -0.55
TCOF1-211ENST00000513346 POLBP06746 335 aa11.6□□□□□ -0.55
TCOF1-211ENST00000513346 ELK3P41970 407 aa11.6□□□□□ -0.55
TCOF1-211ENST00000513346 SLC1A6P48664 564 aa11.6□□□□□ -0.55
TCOF1-211ENST00000513346 MARCKSL1P49006 195 aa11.6□□□□□ -0.55
TCOF1-211ENST00000513346 BMPR2Q13873 1038 aa11.6□□□□□ -0.55
TCOF1-211ENST00000513346 RGS21Q2M5E4 152 aa11.6□□□□□ -0.55
TCOF1-211ENST00000513346 KCNK18Q7Z418 384 aa11.6□□□□□ -0.55
TCOF1-211ENST00000513346 NUP93Q8N1F7 819 aa11.6□□□□□ -0.55
TCOF1-211ENST00000513346 ABHD8Q96I13 439 aa11.6□□□□□ -0.55
TCOF1-211ENST00000513346 SPATA16Q9BXB7 569 aa11.6□□□□□ -0.55
TCOF1-211ENST00000513346 DNAAF2Q9NVR5 837 aaKnown RBP11.6□□□□□ -0.55
TCOF1-211ENST00000513346 ERAP1Q9NZ08 941 aa11.6□□□□□ -0.55
TCOF1-211ENST00000513346 ATP9BO43861 1147 aa11.6□□□□□ -0.55
TCOF1-211ENST00000513346 PEX11AO75192 247 aa11.6□□□□□ -0.55
TCOF1-211ENST00000513346 SERPINE1P05121 402 aa11.6□□□□□ -0.55
TCOF1-211ENST00000513346 APOA4P06727 396 aa11.6□□□□□ -0.55
TCOF1-211ENST00000513346 PDGFRAP16234 1089 aa11.6□□□□□ -0.55
TCOF1-211ENST00000513346 TFE3P19532 575 aaPredicted RBP11.6□□□□□ -0.55
TCOF1-211ENST00000513346 BACE1P56817 501 aa11.6□□□□□ -0.55
TCOF1-211ENST00000513346 USP10Q14694 798 aaKnown RBP11.6□□□□□ -0.55
TCOF1-211ENST00000513346 SEL1L3Q68CR1 1132 aa11.6□□□□□ -0.55
TCOF1-211ENST00000513346 TRAF7Q6Q0C0 670 aa11.6□□□□□ -0.55
TCOF1-211ENST00000513346 MOXD1Q6UVY6 613 aa11.6□□□□□ -0.55
TCOF1-211ENST00000513346 ZNF720Q7Z2F6 126 aa11.6□□□□□ -0.55
TCOF1-211ENST00000513346 RNF135Q8IUD6 432 aa11.6□□□□□ -0.55
TCOF1-211ENST00000513346 DDIASQ8IXT1 998 aa11.6□□□□□ -0.55
TCOF1-211ENST00000513346 LRRC57Q8N9N7 239 aa11.6□□□□□ -0.55
TCOF1-211ENST00000513346 RIN3Q8TB24 985 aa11.6□□□□□ -0.55
TCOF1-211ENST00000513346 ACTL9Q8TC94 416 aa11.6□□□□□ -0.55
TCOF1-211ENST00000513346 HBS1LQ9Y450 684 aaKnown RBP11.6□□□□□ -0.55
TCOF1-211ENST00000513346 SNX9Q9Y5X1 595 aa11.6□□□□□ -0.55
TCOF1-211ENST00000513346 C15orf38-AP3S2A0A0A6YYH1 394 aa11.59□□□□□ -0.55
TCOF1-211ENST00000513346 CCDC130P13994 396 aa11.59□□□□□ -0.55
TCOF1-211ENST00000513346 CPB1P15086 417 aa11.59□□□□□ -0.55
TCOF1-211ENST00000513346 VCAM1P19320 739 aa11.59□□□□□ -0.55
TCOF1-211ENST00000513346 RTP1P59025 263 aa11.59□□□□□ -0.55
TCOF1-211ENST00000513346 KRR1Q13601 381 aaKnown RBP11.59□□□□□ -0.55
TCOF1-211ENST00000513346 ARMCX6Q7L4S7 300 aa11.59□□□□□ -0.55
TCOF1-211ENST00000513346 ARPINQ7Z6K5 226 aa11.59□□□□□ -0.55
TCOF1-211ENST00000513346 MICU2Q8IYU8 434 aa11.59□□□□□ -0.55
TCOF1-211ENST00000513346 MCOLN2Q8IZK6 566 aa11.59□□□□□ -0.55
TCOF1-211ENST00000513346 DLG3Q92796 817 aa11.59□□□□□ -0.55
TCOF1-211ENST00000513346 USP13Q92995 863 aaPredicted RBP11.59□□□□□ -0.55
Retrieved 100 of 20,778 RNA–protein pairs in 43 ms