RNA–Protein interactions for RNA: ENST00000512632.5

LIMCH1-215, Transcript of LIM and calponin homology domains 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMCH1, Length 4,792 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-215ENST00000512632 ZCCHC18P0CG32 403 aa9.61□□□□□ -0.87
LIMCH1-215ENST00000512632 GNAT1P11488 350 aa9.61□□□□□ -0.87
LIMCH1-215ENST00000512632 CLCN3P51790 818 aa9.61□□□□□ -0.87
LIMCH1-215ENST00000512632 MRPS5P82675 430 aaKnown RBP9.61□□□□□ -0.87
LIMCH1-215ENST00000512632 ARHGAP8P85298 464 aa9.61□□□□□ -0.87
LIMCH1-215ENST00000512632 TFDP2Q14188 446 aa9.61□□□□□ -0.87
LIMCH1-215ENST00000512632 CA9Q16790 459 aa9.61□□□□□ -0.87
LIMCH1-215ENST00000512632 CAND1Q86VP6 1230 aaKnown RBP9.61□□□□□ -0.87
LIMCH1-215ENST00000512632 MPP5Q8N3R9 675 aa9.61□□□□□ -0.87
LIMCH1-215ENST00000512632 C12orf29Q8N999 325 aa9.61□□□□□ -0.87
LIMCH1-215ENST00000512632 NETO2Q8NC67 525 aa9.61□□□□□ -0.87
LIMCH1-215ENST00000512632 SH3TC2Q8TF17 1288 aa9.61□□□□□ -0.87
LIMCH1-215ENST00000512632 FAM136AQ96C01 138 aa9.61□□□□□ -0.87
LIMCH1-215ENST00000512632 FRMD8P1Q9BZ68 369 aaPredicted RBP9.61□□□□□ -0.87
LIMCH1-215ENST00000512632 PHACTR1Q9C0D0 580 aa9.61□□□□□ -0.87
LIMCH1-215ENST00000512632 RPF1Q9H9Y2 349 aaKnown RBP9.61□□□□□ -0.87
LIMCH1-215ENST00000512632 WDR35Q9P2L0 1181 aa9.61□□□□□ -0.87
LIMCH1-215ENST00000512632 SPDYE16A6NNV3 312 aaPredicted RBP9.61□□□□□ -0.87
LIMCH1-215ENST00000512632 MEI4A8MW99 385 aa9.61□□□□□ -0.87
LIMCH1-215ENST00000512632 RFPL1O75677 317 aa9.61□□□□□ -0.87
LIMCH1-215ENST00000512632 OSBPP22059 807 aa9.61□□□□□ -0.87
LIMCH1-215ENST00000512632 GPD2P43304 727 aa9.61□□□□□ -0.87
LIMCH1-215ENST00000512632 UBAP2LQ14157 1087 aaKnown RBP9.61□□□□□ -0.87
LIMCH1-215ENST00000512632 KRT72Q14CN4 511 aa9.61□□□□□ -0.87
LIMCH1-215ENST00000512632 LRRC36Q1X8D7 754 aa9.61□□□□□ -0.87
LIMCH1-215ENST00000512632 HSDL1Q3SXM5 330 aa9.61□□□□□ -0.87
LIMCH1-215ENST00000512632 SEPT1Q8WYJ6 367 aa9.61□□□□□ -0.87
LIMCH1-215ENST00000512632 TMEM176AQ96HP8 235 aa9.61□□□□□ -0.87
LIMCH1-215ENST00000512632 MINDY3Q9H8M7 445 aa9.61□□□□□ -0.87
LIMCH1-215ENST00000512632 PLAC1Q9HBJ0 212 aa9.61□□□□□ -0.87
LIMCH1-215ENST00000512632 KRT82Q9NSB4 513 aa9.61□□□□□ -0.87
LIMCH1-215ENST00000512632 SLC17A6Q9P2U8 582 aa9.61□□□□□ -0.87
LIMCH1-215ENST00000512632 STX18Q9P2W9 335 aaKnown RBP9.61□□□□□ -0.87
LIMCH1-215ENST00000512632 PPAN-P2RY11A0A0B4J1V8 794 aaPredicted RBP9.61□□□□□ -0.87
LIMCH1-215ENST00000512632 ABLIM1O14639 778 aa9.61□□□□□ -0.87
LIMCH1-215ENST00000512632 MAP3K7O43318 606 aa9.61□□□□□ -0.87
LIMCH1-215ENST00000512632 GPD1P21695 349 aa9.61□□□□□ -0.87
LIMCH1-215ENST00000512632 IGBP1P78318 339 aa9.61□□□□□ -0.87
LIMCH1-215ENST00000512632 LGSNQ5TDP6 509 aa9.61□□□□□ -0.87
LIMCH1-215ENST00000512632 IER5Q5VY09 327 aa9.61□□□□□ -0.87
LIMCH1-215ENST00000512632 MICALL2Q8IY33 904 aa9.61□□□□□ -0.87
LIMCH1-215ENST00000512632 POU5F2Q8N7G0 328 aa9.61□□□□□ -0.87
LIMCH1-215ENST00000512632 APOL6Q9BWW8 343 aa9.61□□□□□ -0.87
LIMCH1-215ENST00000512632 AS3MTQ9HBK9 375 aa9.61□□□□□ -0.87
LIMCH1-215ENST00000512632 POPDC2Q9HBU9 364 aa9.61□□□□□ -0.87
LIMCH1-215ENST00000512632 PAK5Q9P286 719 aa9.61□□□□□ -0.87
LIMCH1-215ENST00000512632 SCOCQ9UIL1 159 aa9.61□□□□□ -0.87
LIMCH1-215ENST00000512632 E2F8A0AVK6 867 aa9.6□□□□□ -0.87
LIMCH1-215ENST00000512632 GPR25O00155 361 aa9.6□□□□□ -0.87
LIMCH1-215ENST00000512632 METTL18O95568 372 aa9.6□□□□□ -0.87
LIMCH1-215ENST00000512632 KCNA3P22001 575 aa9.6□□□□□ -0.87
LIMCH1-215ENST00000512632 CRADDP78560 199 aa9.6□□□□□ -0.87
LIMCH1-215ENST00000512632 OCRLQ01968 901 aa9.6□□□□□ -0.87
LIMCH1-215ENST00000512632 WDR78Q5VTH9 848 aa9.6□□□□□ -0.87
LIMCH1-215ENST00000512632 BSPRYQ5W0U4 402 aa9.6□□□□□ -0.87
LIMCH1-215ENST00000512632 MAP1SQ66K74 1059 aaPredicted RBP9.6□□□□□ -0.87
LIMCH1-215ENST00000512632 IRGCQ6NXR0 463 aa9.6□□□□□ -0.87
LIMCH1-215ENST00000512632 MPZL3Q6UWV2 235 aa9.6□□□□□ -0.87
LIMCH1-215ENST00000512632 RIPOR1Q6ZS17 1223 aa9.6□□□□□ -0.87
LIMCH1-215ENST00000512632 TMPRSS6Q8IU80 811 aa9.6□□□□□ -0.87
LIMCH1-215ENST00000512632 CRLF3Q8IUI8 442 aa9.6□□□□□ -0.87
LIMCH1-215ENST00000512632 CCNJLQ8IV13 435 aa9.6□□□□□ -0.87
LIMCH1-215ENST00000512632 SCUBE1Q8IWY4 988 aa9.6□□□□□ -0.87
LIMCH1-215ENST00000512632 MCRS1Q96EZ8 462 aa9.6□□□□□ -0.87
LIMCH1-215ENST00000512632 CNPY3Q9BT09 278 aa9.6□□□□□ -0.87
LIMCH1-215ENST00000512632 VCXQ9H320 206 aa9.6□□□□□ -0.87
LIMCH1-215ENST00000512632 LACTBL1A8MY62 500 aa9.6□□□□□ -0.87
LIMCH1-215ENST00000512632 SPECC1L-ADORA2AF8WAN1 911 aa9.6□□□□□ -0.87
LIMCH1-215ENST00000512632 LYPLA1O75608 230 aaPredicted RBP9.6□□□□□ -0.87
LIMCH1-215ENST00000512632 C1QAP02745 245 aa9.6□□□□□ -0.87
LIMCH1-215ENST00000512632 GMPRP36959 345 aa9.6□□□□□ -0.87
LIMCH1-215ENST00000512632 POLE2P56282 527 aa9.6□□□□□ -0.87
LIMCH1-215ENST00000512632 SURF1Q15526 300 aa9.6□□□□□ -0.87
LIMCH1-215ENST00000512632 CASC4Q6P4E1 433 aa9.6□□□□□ -0.87
LIMCH1-215ENST00000512632 UNC5AQ6ZN44 842 aa9.6□□□□□ -0.87
LIMCH1-215ENST00000512632 CATSPERGQ6ZRH7 1159 aa9.6□□□□□ -0.87
LIMCH1-215ENST00000512632 ARHGAP24Q8N264 748 aa9.6□□□□□ -0.87
LIMCH1-215ENST00000512632 DDX51Q8N8A6 666 aaKnown RBP eCLIP9.6□□□□□ -0.87
LIMCH1-215ENST00000512632 HIPK4Q8NE63 616 aa9.6□□□□□ -0.87
LIMCH1-215ENST00000512632 CDT1Q9H211 546 aa9.6□□□□□ -0.87
LIMCH1-215ENST00000512632 R3HDMLQ9H3Y0 253 aa9.6□□□□□ -0.87
LIMCH1-215ENST00000512632 C2CD2Q9Y426 696 aa9.6□□□□□ -0.87
LIMCH1-215ENST00000512632 KIAA1217Q5T5P2 1943 aa9.6□□□□□ -0.87
LIMCH1-215ENST00000512632 ARHGAP42A6NI28 874 aa9.6□□□□□ -0.87
LIMCH1-215ENST00000512632 SMAPO00193 183 aa9.6□□□□□ -0.87
LIMCH1-215ENST00000512632 C6orf222P0C671 652 aaPredicted RBP9.6□□□□□ -0.87
LIMCH1-215ENST00000512632 IL4RP24394 825 aa9.6□□□□□ -0.87
LIMCH1-215ENST00000512632 ZNF143P52747 638 aaPredicted RBP9.6□□□□□ -0.87
LIMCH1-215ENST00000512632 CACNA2D1P54289 1103 aa9.6□□□□□ -0.87
LIMCH1-215ENST00000512632 C1orf146Q5VVC0 180 aa9.6□□□□□ -0.87
LIMCH1-215ENST00000512632 FAM160B1Q5W0V3 765 aa9.6□□□□□ -0.87
LIMCH1-215ENST00000512632 ATG16L1Q676U5 607 aa9.6□□□□□ -0.87
LIMCH1-215ENST00000512632 FAM183BPQ6ZVS7 135 aa9.6□□□□□ -0.87
LIMCH1-215ENST00000512632 CYP4V2Q6ZWL3 525 aaPredicted RBP9.6□□□□□ -0.87
LIMCH1-215ENST00000512632 PCDH19Q8TAB3 1148 aa9.6□□□□□ -0.87
LIMCH1-215ENST00000512632 MIS12Q9H081 205 aa9.6□□□□□ -0.87
LIMCH1-215ENST00000512632 ETNK2Q9NVF9 386 aa9.6□□□□□ -0.87
LIMCH1-215ENST00000512632 KCNK4Q9NYG8 393 aa9.6□□□□□ -0.87
LIMCH1-215ENST00000512632 SLC7A8Q9UHI5 535 aa9.6□□□□□ -0.87
LIMCH1-215ENST00000512632 IGKV6D-21A0A0A0MT36 114 aa9.6□□□□□ -0.87
Retrieved 100 of 20,778 RNA–protein pairs in 15.4 ms