RNA–Protein interactions for RNA: ENST00000512151.5

NUP54-211, Transcript of nucleoporin 54, humanhuman

TSL 2

Gene NUP54, Length 1,385 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-211ENST00000512151 ACBD6Q9BR61 282 aa9.74□□□□□ -0.85
NUP54-211ENST00000512151 C6orf106Q9H6K1 298 aaPredicted RBP9.74□□□□□ -0.85
NUP54-211ENST00000512151 SPHK2Q9NRA0 654 aa9.74□□□□□ -0.85
NUP54-211ENST00000512151 DDX19AQ9NUU7 478 aaKnown RBP9.74□□□□□ -0.85
NUP54-211ENST00000512151 DNAJC17Q9NVM6 304 aaKnown RBP9.74□□□□□ -0.85
NUP54-211ENST00000512151 DDX43Q9NXZ2 648 aaKnown RBP9.74□□□□□ -0.85
NUP54-211ENST00000512151 LRWD1Q9UFC0 647 aa9.74□□□□□ -0.85
NUP54-211ENST00000512151 CPSF3Q9UKF6 684 aaKnown RBP9.74□□□□□ -0.85
NUP54-211ENST00000512151 LIMCH1Q9UPQ0 1083 aa9.74□□□□□ -0.85
NUP54-211ENST00000512151 TLN1Q9Y490 2541 aaKnown RBP9.73□□□□□ -0.85
NUP54-211ENST00000512151 TP53BP1Q12888 1972 aaPredicted RBP9.73□□□□□ -0.85
NUP54-211ENST00000512151 OGTO15294 1046 aa9.73□□□□□ -0.85
NUP54-211ENST00000512151 PFKFB2O60825 505 aa9.73□□□□□ -0.85
NUP54-211ENST00000512151 LDOC1O95751 146 aaPredicted RBP9.73□□□□□ -0.85
NUP54-211ENST00000512151 IGLV3-19P01714 112 aa9.73□□□□□ -0.85
NUP54-211ENST00000512151 C1SP09871 688 aa9.73□□□□□ -0.85
NUP54-211ENST00000512151 MBL2P11226 248 aaPredicted RBP9.73□□□□□ -0.85
NUP54-211ENST00000512151 FDPSP14324 419 aaKnown RBP9.73□□□□□ -0.85
NUP54-211ENST00000512151 MUTP22033 750 aa9.73□□□□□ -0.85
NUP54-211ENST00000512151 GLDCP23378 1020 aa9.73□□□□□ -0.85
NUP54-211ENST00000512151 CDC25AP30304 524 aa9.73□□□□□ -0.85
NUP54-211ENST00000512151 VAC14Q08AM6 782 aa9.73□□□□□ -0.85
NUP54-211ENST00000512151 RAD51AP2Q09MP3 1159 aa9.73□□□□□ -0.85
NUP54-211ENST00000512151 SHBQ15464 509 aa9.73□□□□□ -0.85
NUP54-211ENST00000512151 ANO4Q32M45 955 aa9.73□□□□□ -0.85
NUP54-211ENST00000512151 BROXQ5VW32 411 aa9.73□□□□□ -0.85
NUP54-211ENST00000512151 BTBD8Q5XKL5 378 aa9.73□□□□□ -0.85
NUP54-211ENST00000512151 SLC39A4Q6P5W5 647 aa9.73□□□□□ -0.85
NUP54-211ENST00000512151 KCNK18Q7Z418 384 aa9.73□□□□□ -0.85
NUP54-211ENST00000512151 FAM124AQ86V42 546 aa9.73□□□□□ -0.85
NUP54-211ENST00000512151 CACUL1Q86Y37 369 aa9.73□□□□□ -0.85
NUP54-211ENST00000512151 SPATA2LQ8IUW3 424 aaPredicted RBP9.73□□□□□ -0.85
NUP54-211ENST00000512151 ENGASEQ8NFI3 743 aa9.73□□□□□ -0.85
NUP54-211ENST00000512151 TMX3Q96JJ7 454 aa9.73□□□□□ -0.85
NUP54-211ENST00000512151 FAM84AQ96KN4 292 aa9.73□□□□□ -0.85
NUP54-211ENST00000512151 TTLL2Q9BWV7 592 aa9.73□□□□□ -0.85
NUP54-211ENST00000512151 DPP3Q9NY33 737 aa9.73□□□□□ -0.85
NUP54-211ENST00000512151 TBC1D14Q9P2M4 693 aa9.73□□□□□ -0.85
NUP54-211ENST00000512151 PCDHB1Q9Y5F3 818 aa9.73□□□□□ -0.85
NUP54-211ENST00000512151 A0A0B4J269 797 aa9.72□□□□□ -0.85
NUP54-211ENST00000512151 A0A1B0GTQ1 180 aa9.72□□□□□ -0.85
NUP54-211ENST00000512151 ABL1P00519 1130 aa9.72□□□□□ -0.85
NUP54-211ENST00000512151 CISD3P0C7P0 127 aa9.72□□□□□ -0.85
NUP54-211ENST00000512151 MYF5P13349 255 aa9.72□□□□□ -0.85
NUP54-211ENST00000512151 XBP1P17861 261 aa9.72□□□□□ -0.85
NUP54-211ENST00000512151 MAGEA11P43364 429 aa9.72□□□□□ -0.85
NUP54-211ENST00000512151 GRIA4P48058 902 aa9.72□□□□□ -0.85
NUP54-211ENST00000512151 FOSBP53539 338 aa9.72□□□□□ -0.85
NUP54-211ENST00000512151 UCNP55089 124 aa9.72□□□□□ -0.85
NUP54-211ENST00000512151 PCBP4P57723 403 aaKnown RBP9.72□□□□□ -0.85
NUP54-211ENST00000512151 INSM1Q01101 510 aaPredicted RBP9.72□□□□□ -0.85
NUP54-211ENST00000512151 C6orf132Q5T0Z8 1188 aa9.72□□□□□ -0.85
NUP54-211ENST00000512151 CPLX2Q6PUV4 134 aaKnown RBP9.72□□□□□ -0.85
NUP54-211ENST00000512151 ZNF574Q6ZN55 896 aaPredicted RBP9.72□□□□□ -0.85
NUP54-211ENST00000512151 DCBLD1Q8N8Z6 715 aa9.72□□□□□ -0.85
NUP54-211ENST00000512151 BICD1Q96G01 975 aa9.72□□□□□ -0.85
NUP54-211ENST00000512151 SPATA17Q96L03 361 aa9.72□□□□□ -0.85
NUP54-211ENST00000512151 ZSCAN31Q96LW9 406 aaPredicted RBP9.72□□□□□ -0.85
NUP54-211ENST00000512151 ORAI3Q9BRQ5 295 aa9.72□□□□□ -0.85
NUP54-211ENST00000512151 FAM117AQ9C073 453 aa9.72□□□□□ -0.85
NUP54-211ENST00000512151 C17orf75Q9HAS0 396 aa9.72□□□□□ -0.85
NUP54-211ENST00000512151 HSPBP1Q9NZL4 362 aa9.72□□□□□ -0.85
NUP54-211ENST00000512151 DERAQ9Y315 318 aa9.72□□□□□ -0.85
NUP54-211ENST00000512151 PCDHB6Q9Y5E3 794 aa9.72□□□□□ -0.85
NUP54-211ENST00000512151 HEMK1Q9Y5R4 338 aaPredicted RBP9.72□□□□□ -0.85
NUP54-211ENST00000512151 STON1Q9Y6Q2 735 aa9.72□□□□□ -0.85
NUP54-211ENST00000512151 MYH11P35749 1972 aa9.72□□□□□ -0.85
NUP54-211ENST00000512151 GFRA2O00451 464 aa9.71□□□□□ -0.86
NUP54-211ENST00000512151 KLK10O43240 276 aa9.71□□□□□ -0.86
NUP54-211ENST00000512151 COCHO43405 550 aa9.71□□□□□ -0.86
NUP54-211ENST00000512151 CACNG3O60359 315 aa9.71□□□□□ -0.86
NUP54-211ENST00000512151 OR52Z1P0C646 297 aa9.71□□□□□ -0.86
NUP54-211ENST00000512151 PLS3P13797 630 aa9.71□□□□□ -0.86
NUP54-211ENST00000512151 BDNFP23560 247 aa9.71□□□□□ -0.86
NUP54-211ENST00000512151 OXTRP30559 389 aa9.71□□□□□ -0.86
NUP54-211ENST00000512151 ACOT2P49753 483 aa9.71□□□□□ -0.86
NUP54-211ENST00000512151 COPAP53621 1224 aa9.71□□□□□ -0.86
NUP54-211ENST00000512151 WNT7BP56706 349 aa9.71□□□□□ -0.86
NUP54-211ENST00000512151 TAF10Q12962 218 aa9.71□□□□□ -0.86
NUP54-211ENST00000512151 UBAP2LQ14157 1087 aaKnown RBP9.71□□□□□ -0.86
NUP54-211ENST00000512151 TEAD4Q15561 434 aa9.71□□□□□ -0.86
NUP54-211ENST00000512151 ZNF174Q15697 407 aa9.71□□□□□ -0.86
NUP54-211ENST00000512151 KYAT1Q16773 422 aa9.71□□□□□ -0.86
NUP54-211ENST00000512151 INAVAQ3KP66 663 aa9.71□□□□□ -0.86
NUP54-211ENST00000512151 SV2CQ496J9 727 aa9.71□□□□□ -0.86
NUP54-211ENST00000512151 HIST2H2BCQ6DN03 193 aa9.71□□□□□ -0.86
NUP54-211ENST00000512151 FAM171BQ6P995 826 aa9.71□□□□□ -0.86
NUP54-211ENST00000512151 DENND5BQ6ZUT9 1274 aa9.71□□□□□ -0.86
NUP54-211ENST00000512151 TMPRSS6Q8IU80 811 aa9.71□□□□□ -0.86
NUP54-211ENST00000512151 CCDC83Q8IWF9 413 aa9.71□□□□□ -0.86
NUP54-211ENST00000512151 CD302Q8IX05 232 aa9.71□□□□□ -0.86
NUP54-211ENST00000512151 DHX40Q8IX18 779 aaKnown RBP9.71□□□□□ -0.86
NUP54-211ENST00000512151 EID2Q8N6I1 236 aa9.71□□□□□ -0.86
NUP54-211ENST00000512151 SCFD1Q8WVM8 642 aa9.71□□□□□ -0.86
NUP54-211ENST00000512151 RFFLQ8WZ73 363 aa9.71□□□□□ -0.86
NUP54-211ENST00000512151 GTF3C6Q969F1 213 aa9.71□□□□□ -0.86
NUP54-211ENST00000512151 MYLPFQ96A32 169 aa9.71□□□□□ -0.86
NUP54-211ENST00000512151 OTUB2Q96DC9 234 aa9.71□□□□□ -0.86
NUP54-211ENST00000512151 SIPA1Q96FS4 1042 aa9.71□□□□□ -0.86
NUP54-211ENST00000512151 FUBP3Q96I24 572 aaKnown RBP eCLIP9.71□□□□□ -0.86
Retrieved 100 of 20,778 RNA–protein pairs in 23.3 ms