RNA–Protein interactions for RNA: ENST00000511496.5

LIMCH1-213, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 1 (best) BASIC

Gene LIMCH1, Length 3,439 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-213ENST00000511496 ADCY4Q8NFM4 1077 aa12.46□□□□□ -0.41
LIMCH1-213ENST00000511496 ETNPPLQ8TBG4 499 aa12.46□□□□□ -0.41
LIMCH1-213ENST00000511496 SMARCAD1Q9H4L7 1026 aa12.46□□□□□ -0.41
LIMCH1-213ENST00000511496 STRIP2Q9ULQ0 834 aa12.46□□□□□ -0.41
LIMCH1-213ENST00000511496 LMTK3Q96Q04 1460 aa12.46□□□□□ -0.41
LIMCH1-213ENST00000511496 NALCNQ8IZF0 1738 aa12.46□□□□□ -0.42
LIMCH1-213ENST00000511496 H7C0C1 242 aa12.46□□□□□ -0.42
LIMCH1-213ENST00000511496 NOL3O60936 208 aaKnown RBP12.46□□□□□ -0.42
LIMCH1-213ENST00000511496 ITGAXP20702 1163 aa12.46□□□□□ -0.42
LIMCH1-213ENST00000511496 HNRNPFP52597 415 aaKnown RBP12.46□□□□□ -0.42
LIMCH1-213ENST00000511496 MAPK11Q15759 364 aa12.46□□□□□ -0.42
LIMCH1-213ENST00000511496 LMOD2Q6P5Q4 547 aa12.46□□□□□ -0.42
LIMCH1-213ENST00000511496 PTAR1Q7Z6K3 402 aaPredicted RBP12.46□□□□□ -0.42
LIMCH1-213ENST00000511496 NOP9Q86U38 636 aaKnown RBP12.46□□□□□ -0.42
LIMCH1-213ENST00000511496 FAM47BQ8NA70 645 aa12.46□□□□□ -0.42
LIMCH1-213ENST00000511496 IP6K1Q92551 441 aa12.46□□□□□ -0.42
LIMCH1-213ENST00000511496 CD101Q93033 1021 aa12.46□□□□□ -0.42
LIMCH1-213ENST00000511496 ZNF486Q96H40 463 aaPredicted RBP12.46□□□□□ -0.42
LIMCH1-213ENST00000511496 SERAC1Q96JX3 654 aa12.46□□□□□ -0.42
LIMCH1-213ENST00000511496 ATRNO75882 1429 aa12.45□□□□□ -0.42
LIMCH1-213ENST00000511496 ILVBLA1L0T0 632 aa12.45□□□□□ -0.42
LIMCH1-213ENST00000511496 M0R2N6 131 aa12.45□□□□□ -0.42
LIMCH1-213ENST00000511496 PLOD2O00469 737 aa12.45□□□□□ -0.42
LIMCH1-213ENST00000511496 RALAP11233 206 aa12.45□□□□□ -0.42
LIMCH1-213ENST00000511496 HSPA13P48723 471 aa12.45□□□□□ -0.42
LIMCH1-213ENST00000511496 TWF2Q6IBS0 349 aaKnown RBP12.45□□□□□ -0.42
LIMCH1-213ENST00000511496 EEPD1Q7L9B9 569 aa12.45□□□□□ -0.42
LIMCH1-213ENST00000511496 SIX6OS1Q8N1H7 587 aa12.45□□□□□ -0.42
LIMCH1-213ENST00000511496 CPSF7Q8N684 471 aaKnown RBP12.45□□□□□ -0.42
LIMCH1-213ENST00000511496 ALPK1Q96QP1 1244 aa12.45□□□□□ -0.42
LIMCH1-213ENST00000511496 MMP19Q99542 508 aa12.45□□□□□ -0.42
LIMCH1-213ENST00000511496 NYXQ9GZU5 481 aa12.45□□□□□ -0.42
LIMCH1-213ENST00000511496 IKZF4Q9H2S9 585 aa12.45□□□□□ -0.42
LIMCH1-213ENST00000511496 POLE4Q9NR33 117 aa12.45□□□□□ -0.42
LIMCH1-213ENST00000511496 GINM1Q9NU53 330 aa12.45□□□□□ -0.42
LIMCH1-213ENST00000511496 OLAHQ9NV23 265 aa12.45□□□□□ -0.42
LIMCH1-213ENST00000511496 CRNNQ9UBG3 495 aaPredicted RBP12.45□□□□□ -0.42
LIMCH1-213ENST00000511496 EXOC7Q9UPT5 735 aa12.45□□□□□ -0.42
LIMCH1-213ENST00000511496 SLC27A5Q9Y2P5 690 aa12.45□□□□□ -0.42
LIMCH1-213ENST00000511496 SMCO2A6NFE2 343 aa12.45□□□□□ -0.42
LIMCH1-213ENST00000511496 PIK3R2O00459 728 aa12.45□□□□□ -0.42
LIMCH1-213ENST00000511496 TCN1P20061 433 aaPredicted RBP12.45□□□□□ -0.42
LIMCH1-213ENST00000511496 CXCR2P25025 360 aa12.45□□□□□ -0.42
LIMCH1-213ENST00000511496 SLC1A1P43005 524 aa12.45□□□□□ -0.42
LIMCH1-213ENST00000511496 TBCCQ15814 346 aa12.45□□□□□ -0.42
LIMCH1-213ENST00000511496 FRMD7Q6ZUT3 714 aa12.45□□□□□ -0.42
LIMCH1-213ENST00000511496 SREK1IP1Q8N9Q2 155 aaPredicted RBP12.45□□□□□ -0.42
LIMCH1-213ENST00000511496 FKBP14Q9NWM8 211 aa12.45□□□□□ -0.42
LIMCH1-213ENST00000511496 TMEM260Q9NX78 707 aa12.45□□□□□ -0.42
LIMCH1-213ENST00000511496 KIAA1024Q9UPX6 916 aa12.45□□□□□ -0.42
LIMCH1-213ENST00000511496 APOBEC2Q9Y235 224 aaKnown RBP12.45□□□□□ -0.42
LIMCH1-213ENST00000511496 AP4S1Q9Y587 144 aa12.45□□□□□ -0.42
LIMCH1-213ENST00000511496 KAT6AQ92794 2004 aa12.45□□□□□ -0.42
LIMCH1-213ENST00000511496 COPEO14579 308 aa12.44□□□□□ -0.42
LIMCH1-213ENST00000511496 AIM2O14862 343 aa12.44□□□□□ -0.42
LIMCH1-213ENST00000511496 ALOX15BO15296 676 aa12.44□□□□□ -0.42
LIMCH1-213ENST00000511496 STAM2O75886 525 aa12.44□□□□□ -0.42
LIMCH1-213ENST00000511496 GLULP15104 373 aa12.44□□□□□ -0.42
LIMCH1-213ENST00000511496 ARSEP51690 589 aa12.44□□□□□ -0.42
LIMCH1-213ENST00000511496 COPZ1P61923 177 aa12.44□□□□□ -0.42
LIMCH1-213ENST00000511496 PPP2R5DQ14738 602 aa12.44□□□□□ -0.42
LIMCH1-213ENST00000511496 FRA10AC1Q70Z53 315 aa12.44□□□□□ -0.42
LIMCH1-213ENST00000511496 NUDCD3Q8IVD9 361 aa12.44□□□□□ -0.42
LIMCH1-213ENST00000511496 CHERPQ8IWX8 916 aaKnown RBP12.44□□□□□ -0.42
LIMCH1-213ENST00000511496 ELMOD2Q8IZ81 293 aa12.44□□□□□ -0.42
LIMCH1-213ENST00000511496 HCAR2Q8TDS4 363 aa12.44□□□□□ -0.42
LIMCH1-213ENST00000511496 ALKBH8Q96BT7 664 aaKnown RBP12.44□□□□□ -0.42
LIMCH1-213ENST00000511496 KCNK16Q96T55 309 aa12.44□□□□□ -0.42
LIMCH1-213ENST00000511496 RAB34Q9BZG1 259 aa12.44□□□□□ -0.42
LIMCH1-213ENST00000511496 TRIT1Q9H3H1 467 aaKnown RBP12.44□□□□□ -0.42
LIMCH1-213ENST00000511496 COQ10BQ9H8M1 238 aa12.44□□□□□ -0.42
LIMCH1-213ENST00000511496 GIMAP4Q9NUV9 329 aa12.44□□□□□ -0.42
LIMCH1-213ENST00000511496 ZNF229Q9UJW7 825 aa12.44□□□□□ -0.42
LIMCH1-213ENST00000511496 POLIQ9UNA4 740 aa12.44□□□□□ -0.42
LIMCH1-213ENST00000511496 DCCP43146 1447 aa12.44□□□□□ -0.42
LIMCH1-213ENST00000511496 PDE8AO60658 829 aa12.44□□□□□ -0.42
LIMCH1-213ENST00000511496 RSL1D1O76021 490 aaKnown RBP12.44□□□□□ -0.42
LIMCH1-213ENST00000511496 TDP2O95551 362 aa12.44□□□□□ -0.42
LIMCH1-213ENST00000511496 BCL10O95999 233 aa12.44□□□□□ -0.42
LIMCH1-213ENST00000511496 UQCRFS1P1P0C7P4 283 aa12.44□□□□□ -0.42
LIMCH1-213ENST00000511496 AOC1P19801 751 aa12.44□□□□□ -0.42
LIMCH1-213ENST00000511496 GABRB3P28472 473 aa12.44□□□□□ -0.42
LIMCH1-213ENST00000511496 ZNF135P52742 658 aaPredicted RBP12.44□□□□□ -0.42
LIMCH1-213ENST00000511496 GPX6P59796 221 aa12.44□□□□□ -0.42
LIMCH1-213ENST00000511496 NEDD8Q15843 81 aa12.44□□□□□ -0.42
LIMCH1-213ENST00000511496 PALM2Q8IXS6 379 aa12.44□□□□□ -0.42
LIMCH1-213ENST00000511496 ZSCAN18Q8TBC5 510 aaPredicted RBP12.44□□□□□ -0.42
LIMCH1-213ENST00000511496 SLC2A11Q9BYW1 496 aa12.44□□□□□ -0.42
LIMCH1-213ENST00000511496 STN1Q9H668 368 aaKnown RBP12.44□□□□□ -0.42
LIMCH1-213ENST00000511496 POLR1BQ9H9Y6 1135 aa12.44□□□□□ -0.42
LIMCH1-213ENST00000511496 RIC8BQ9NVN3 520 aa12.44□□□□□ -0.42
LIMCH1-213ENST00000511496 WDR70Q9NW82 654 aa12.44□□□□□ -0.42
LIMCH1-213ENST00000511496 ANKMY1Q9P2S6 941 aa12.44□□□□□ -0.42
LIMCH1-213ENST00000511496 RIMS3Q9UJD0 308 aa12.44□□□□□ -0.42
LIMCH1-213ENST00000511496 A0A087WXM4 84 aa12.44□□□□□ -0.42
LIMCH1-213ENST00000511496 PCP4L1A6NKN8 68 aa12.44□□□□□ -0.42
LIMCH1-213ENST00000511496 USP17L12C9JPN9 530 aa12.44□□□□□ -0.42
LIMCH1-213ENST00000511496 USP17L21D6R901 530 aa12.44□□□□□ -0.42
LIMCH1-213ENST00000511496 PARNO95453 639 aaKnown RBP12.44□□□□□ -0.42
LIMCH1-213ENST00000511496 TRIM49P0CI25 452 aa12.44□□□□□ -0.42
Retrieved 100 of 20,778 RNA–protein pairs in 44.5 ms