RNA–Protein interactions for RNA: ENST00000510187.5

SQSTM1-213, Transcript of sequestosome 1, humanhuman

TSL 5 BASIC

Gene SQSTM1, Length 1,714 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SQSTM1-213ENST00000510187 FGFR1P11362 822 aa16.75■□□□□ 0.27
SQSTM1-213ENST00000510187 KRT10P13645 584 aa16.75■□□□□ 0.27
SQSTM1-213ENST00000510187 BRD2P25440 801 aaKnown RBP16.75■□□□□ 0.27
SQSTM1-213ENST00000510187 SSTR3P32745 418 aaPredicted RBP16.75■□□□□ 0.27
SQSTM1-213ENST00000510187 CCDC15Q0P6D6 951 aa16.75■□□□□ 0.27
SQSTM1-213ENST00000510187 WDR72Q3MJ13 1102 aa16.75■□□□□ 0.27
SQSTM1-213ENST00000510187 PREPLQ4J6C6 727 aaPredicted RBP16.75■□□□□ 0.27
SQSTM1-213ENST00000510187 ZFYVE27Q5T4F4 411 aa16.75■□□□□ 0.27
SQSTM1-213ENST00000510187 RNASEH2BQ5TBB1 312 aaKnown RBP16.75■□□□□ 0.27
SQSTM1-213ENST00000510187 KAZNQ674X7 775 aa16.75■□□□□ 0.27
SQSTM1-213ENST00000510187 RGS9BPQ6ZS82 235 aa16.75■□□□□ 0.27
SQSTM1-213ENST00000510187 CENPUQ71F23 418 aa16.75■□□□□ 0.27
SQSTM1-213ENST00000510187 TRABD2AQ86V40 505 aa16.75■□□□□ 0.27
SQSTM1-213ENST00000510187 C7orf61Q8IZ16 206 aa16.75■□□□□ 0.27
SQSTM1-213ENST00000510187 TTC13Q8NBP0 860 aa16.75■□□□□ 0.27
SQSTM1-213ENST00000510187 SLC35B2Q8TB61 432 aa16.75■□□□□ 0.27
SQSTM1-213ENST00000510187 ABHD8Q96I13 439 aa16.75■□□□□ 0.27
SQSTM1-213ENST00000510187 RXFP1Q9HBX9 757 aa16.75■□□□□ 0.27
SQSTM1-213ENST00000510187 NXF1Q9UBU9 619 aaKnown RBP16.75■□□□□ 0.27
SQSTM1-213ENST00000510187 F8VP50 259 aa16.74■□□□□ 0.27
SQSTM1-213ENST00000510187 SMAPO00193 183 aa16.74■□□□□ 0.27
SQSTM1-213ENST00000510187 PPEF2O14830 753 aa16.74■□□□□ 0.27
SQSTM1-213ENST00000510187 MED7O43513 233 aa16.74■□□□□ 0.27
SQSTM1-213ENST00000510187 UBOX5O94941 541 aa16.74■□□□□ 0.27
SQSTM1-213ENST00000510187 TCF4P15884 667 aa16.74■□□□□ 0.27
SQSTM1-213ENST00000510187 PECAM1P16284 738 aaPredicted RBP16.74■□□□□ 0.27
SQSTM1-213ENST00000510187 OGDHQ02218 1023 aa16.74■□□□□ 0.27
SQSTM1-213ENST00000510187 MYO1EQ12965 1108 aa16.74■□□□□ 0.27
SQSTM1-213ENST00000510187 BNIP1Q12981 228 aa16.74■□□□□ 0.27
SQSTM1-213ENST00000510187 GRIK3Q13003 919 aa16.74■□□□□ 0.27
SQSTM1-213ENST00000510187 GPS1Q13098 491 aa16.74■□□□□ 0.27
SQSTM1-213ENST00000510187 TMED2Q15363 201 aa16.74■□□□□ 0.27
SQSTM1-213ENST00000510187 ATP13A4Q4VNC1 1196 aa16.74■□□□□ 0.27
SQSTM1-213ENST00000510187 ZNF667Q5HYK9 610 aa16.74■□□□□ 0.27
SQSTM1-213ENST00000510187 CLLU1OSQ5K130 101 aa16.74■□□□□ 0.27
SQSTM1-213ENST00000510187 WLSQ5T9L3 541 aa16.74■□□□□ 0.27
SQSTM1-213ENST00000510187 VRTNQ9H8Y1 702 aa16.74■□□□□ 0.27
SQSTM1-213ENST00000510187 KLHL11Q9NVR0 708 aa16.74■□□□□ 0.27
SQSTM1-213ENST00000510187 INPPL1O15357 1258 aa16.73■□□□□ 0.27
SQSTM1-213ENST00000510187 PFKMP08237 780 aa16.73■□□□□ 0.27
SQSTM1-213ENST00000510187 KRT7P08729 469 aa16.73■□□□□ 0.27
SQSTM1-213ENST00000510187 GCAP28676 217 aa16.73■□□□□ 0.27
SQSTM1-213ENST00000510187 SKIV2L2P42285 1042 aaKnown RBP16.73■□□□□ 0.27
SQSTM1-213ENST00000510187 NCALDP61601 193 aa16.73■□□□□ 0.27
SQSTM1-213ENST00000510187 TAZQ16635 292 aa16.73■□□□□ 0.27
SQSTM1-213ENST00000510187 ABI1Q8IZP0 508 aa16.73■□□□□ 0.27
SQSTM1-213ENST00000510187 LRRC52Q8N7C0 313 aa16.73■□□□□ 0.27
SQSTM1-213ENST00000510187 GDAP1Q8TB36 358 aa16.73■□□□□ 0.27
SQSTM1-213ENST00000510187 URGCPQ8TCY9 931 aa16.73■□□□□ 0.27
SQSTM1-213ENST00000510187 HTATIP2Q9BUP3 242 aa16.73■□□□□ 0.27
SQSTM1-213ENST00000510187 CD248Q9HCU0 757 aa16.73■□□□□ 0.27
SQSTM1-213ENST00000510187 SSU72Q9NP77 194 aaKnown RBP16.73■□□□□ 0.27
SQSTM1-213ENST00000510187 WDR35Q9P2L0 1181 aa16.73■□□□□ 0.27
SQSTM1-213ENST00000510187 TBK1Q9UHD2 729 aa16.73■□□□□ 0.27
SQSTM1-213ENST00000510187 GTF3C5Q9Y5Q8 519 aaPredicted RBP16.73■□□□□ 0.27
SQSTM1-213ENST00000510187 PDCD11Q14690 1871 aaKnown RBP16.73■□□□□ 0.27
SQSTM1-213ENST00000510187 LRRD1A4D1F6 860 aa16.73■□□□□ 0.27
SQSTM1-213ENST00000510187 C3orf70A6NLC5 250 aaPredicted RBP16.73■□□□□ 0.27
SQSTM1-213ENST00000510187 SIGLEC16A6NMB1 481 aa16.73■□□□□ 0.27
SQSTM1-213ENST00000510187 PIRO00625 290 aa16.73■□□□□ 0.27
SQSTM1-213ENST00000510187 ATP6V1G2O95670 118 aa16.73■□□□□ 0.27
SQSTM1-213ENST00000510187 ASMTLO95671 621 aa16.73■□□□□ 0.27
SQSTM1-213ENST00000510187 STAU1O95793 577 aaKnown RBP16.73■□□□□ 0.27
SQSTM1-213ENST00000510187 ACRP10323 421 aa16.73■□□□□ 0.27
SQSTM1-213ENST00000510187 TAC1P20366 129 aa16.73■□□□□ 0.27
SQSTM1-213ENST00000510187 LRPAP1P30533 357 aa16.73■□□□□ 0.27
SQSTM1-213ENST00000510187 ASPAP45381 313 aa16.73■□□□□ 0.27
SQSTM1-213ENST00000510187 FAM133BQ5BKY9 247 aaKnown RBP16.73■□□□□ 0.27
SQSTM1-213ENST00000510187 NOMO2Q5JPE7 1267 aa16.73■□□□□ 0.27
SQSTM1-213ENST00000510187 SCARA5Q6ZMJ2 495 aa16.73■□□□□ 0.27
SQSTM1-213ENST00000510187 LIN28BQ6ZN17 250 aaKnown RBP eCLIP16.73■□□□□ 0.275e-7■■■■■ 35
SQSTM1-213ENST00000510187 WDTC1Q8N5D0 677 aa16.73■□□□□ 0.27
SQSTM1-213ENST00000510187 GLIS1Q8NBF1 620 aa16.73■□□□□ 0.27
SQSTM1-213ENST00000510187 PRCCQ92733 491 aaPredicted RBP16.73■□□□□ 0.27
SQSTM1-213ENST00000510187 KLHL14Q9P2G3 628 aa16.73■□□□□ 0.27
SQSTM1-213ENST00000510187 POLIQ9UNA4 740 aa16.73■□□□□ 0.27
SQSTM1-213ENST00000510187 ABHD14A-ACY1A0A1B0GW23 586 aa16.72■□□□□ 0.27
SQSTM1-213ENST00000510187 CASTOR2A6NHX0 329 aa16.72■□□□□ 0.27
SQSTM1-213ENST00000510187 CCDC85CA6NKD9 419 aa16.72■□□□□ 0.27
SQSTM1-213ENST00000510187 P4HA1P13674 534 aa16.72■□□□□ 0.27
SQSTM1-213ENST00000510187 TSHRP16473 764 aa16.72■□□□□ 0.27
SQSTM1-213ENST00000510187 PNPLA4P41247 253 aa16.72■□□□□ 0.27
SQSTM1-213ENST00000510187 SLC25A11Q02978 314 aaKnown RBP16.72■□□□□ 0.27
SQSTM1-213ENST00000510187 SPARCL1Q14515 664 aa16.72■□□□□ 0.27
SQSTM1-213ENST00000510187 HADHQ16836 314 aaKnown RBP16.72■□□□□ 0.27
SQSTM1-213ENST00000510187 BBS12Q6ZW61 710 aa16.72■□□□□ 0.27
SQSTM1-213ENST00000510187 NPAS4Q8IUM7 802 aa16.72■□□□□ 0.27
SQSTM1-213ENST00000510187 DENND1AQ8TEH3 1009 aa16.72■□□□□ 0.27
SQSTM1-213ENST00000510187 TFAP2BQ92481 460 aa16.72■□□□□ 0.27
SQSTM1-213ENST00000510187 BADQ92934 168 aa16.72■□□□□ 0.27
SQSTM1-213ENST00000510187 ZNF560Q96MR9 790 aa16.72■□□□□ 0.27
SQSTM1-213ENST00000510187 ECT2Q9H8V3 914 aa16.72■□□□□ 0.27
SQSTM1-213ENST00000510187 IL23AQ9NPF7 189 aa16.72■□□□□ 0.27
SQSTM1-213ENST00000510187 KANSL3Q9P2N6 904 aa16.72■□□□□ 0.27
SQSTM1-213ENST00000510187 CACNG4Q9UBN1 327 aa16.72■□□□□ 0.27
SQSTM1-213ENST00000510187 STARD13Q9Y3M8 1113 aa16.72■□□□□ 0.27
SQSTM1-213ENST00000510187 FARP1Q9Y4F1 1045 aaPredicted RBP16.72■□□□□ 0.27
SQSTM1-213ENST00000510187 HOXA2O43364 376 aa16.71■□□□□ 0.27
SQSTM1-213ENST00000510187 WEE2P0C1S8 567 aa16.71■□□□□ 0.27
SQSTM1-213ENST00000510187 ZSCAN5DPP0CG00 497 aa16.71■□□□□ 0.27
Retrieved 100 of 20,778 RNA–protein pairs in 28.3 ms