RNA–Protein interactions for RNA: ENST00000508604.5

NUP54-208, Transcript of nucleoporin 54, humanhuman

TSL 2

Gene NUP54, Length 1,671 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-208ENST00000508604 TXNL4AP83876 142 aaKnown RBP3.5□□□□□ -1.85
NUP54-208ENST00000508604 EARS2Q5JPH6 523 aaKnown RBP3.5□□□□□ -1.85
NUP54-208ENST00000508604 ARHGAP30Q7Z6I6 1101 aaPredicted RBP3.5□□□□□ -1.85
NUP54-208ENST00000508604 FOXP4Q8IVH2 680 aaPredicted RBP3.5□□□□□ -1.85
NUP54-208ENST00000508604 FAM71DQ8N9W8 422 aa3.5□□□□□ -1.85
NUP54-208ENST00000508604 ATP2A3Q93084 1043 aa3.5□□□□□ -1.85
NUP54-208ENST00000508604 TUBB6Q9BUF5 446 aa3.5□□□□□ -1.85
NUP54-208ENST00000508604 TRIM54Q9BYV2 358 aa3.5□□□□□ -1.85
NUP54-208ENST00000508604 NUAK2Q9H093 628 aa3.5□□□□□ -1.85
NUP54-208ENST00000508604 LUC7L2Q9Y383 392 aaKnown RBP3.5□□□□□ -1.85
NUP54-208ENST00000508604 A0A088AWK7 358 aa3.49□□□□□ -1.85
NUP54-208ENST00000508604 FYB1O15117 783 aa3.49□□□□□ -1.85
NUP54-208ENST00000508604 KPNB1Q14974 876 aaKnown RBP3.49□□□□□ -1.85
NUP54-208ENST00000508604 ST3GAL2Q16842 350 aa3.49□□□□□ -1.85
NUP54-208ENST00000508604 RFX8Q6ZV50 586 aa3.49□□□□□ -1.85
NUP54-208ENST00000508604 DAAM2Q86T65 1068 aa3.49□□□□□ -1.85
NUP54-208ENST00000508604 FBXL14Q8N1E6 418 aa3.49□□□□□ -1.85
NUP54-208ENST00000508604 TMEM199Q8N511 208 aa3.49□□□□□ -1.85
NUP54-208ENST00000508604 PNPLA1Q8N8W4 532 aa3.49□□□□□ -1.85
NUP54-208ENST00000508604 PRPF38AQ8NAV1 312 aaKnown RBP3.49□□□□□ -1.85
NUP54-208ENST00000508604 SMCR8Q8TEV9 937 aaPredicted RBP3.49□□□□□ -1.85
NUP54-208ENST00000508604 HPS3Q969F9 1004 aa3.49□□□□□ -1.85
NUP54-208ENST00000508604 FAM84BQ96KN1 310 aaPredicted RBP3.49□□□□□ -1.85
NUP54-208ENST00000508604 NUP88Q99567 741 aaPredicted RBP3.49□□□□□ -1.85
NUP54-208ENST00000508604 XPNPEP3Q9NQH7 507 aa3.49□□□□□ -1.85
NUP54-208ENST00000508604 TTBK1Q5TCY1 1321 aaPredicted RBP3.49□□□□□ -1.85
NUP54-208ENST00000508604 WASHC2CQ9Y4E1 1318 aa3.49□□□□□ -1.85
NUP54-208ENST00000508604 C2CD4BA6NLJ0 364 aa3.49□□□□□ -1.85
NUP54-208ENST00000508604 F8W810 466 aa3.49□□□□□ -1.85
NUP54-208ENST00000508604 CD3EAPO15446 510 aaKnown RBP3.49□□□□□ -1.85
NUP54-208ENST00000508604 PHGDHO43175 533 aaKnown RBP3.49□□□□□ -1.85
NUP54-208ENST00000508604 AKAP10O43572 662 aa3.49□□□□□ -1.85
NUP54-208ENST00000508604 OFD1O75665 1012 aa3.49□□□□□ -1.85
NUP54-208ENST00000508604 NDUFB8O95169 186 aa3.49□□□□□ -1.85
NUP54-208ENST00000508604 PLAUP00749 431 aa3.49□□□□□ -1.85
NUP54-208ENST00000508604 TNFRSF1BP20333 461 aa3.49□□□□□ -1.85
NUP54-208ENST00000508604 GATMP50440 423 aa3.49□□□□□ -1.85
NUP54-208ENST00000508604 PPATQ06203 517 aa3.49□□□□□ -1.85
NUP54-208ENST00000508604 C9orf50Q5SZB4 431 aa3.49□□□□□ -1.85
NUP54-208ENST00000508604 GSG1LQ6UXU4 331 aa3.49□□□□□ -1.85
NUP54-208ENST00000508604 TRAPPC11Q7Z392 1133 aa3.49□□□□□ -1.85
NUP54-208ENST00000508604 ZBTB46Q86UZ6 589 aa3.49□□□□□ -1.85
NUP54-208ENST00000508604 SLC44A5Q8NCS7 719 aa3.49□□□□□ -1.85
NUP54-208ENST00000508604 PLBD2Q8NHP8 589 aa3.49□□□□□ -1.85
NUP54-208ENST00000508604 ASB5Q8WWX0 329 aa3.49□□□□□ -1.85
NUP54-208ENST00000508604 SPSB4Q96A44 273 aa3.49□□□□□ -1.85
NUP54-208ENST00000508604 EDC3Q96F86 508 aaKnown RBP3.49□□□□□ -1.85
NUP54-208ENST00000508604 TRMT61AQ96FX7 289 aaKnown RBP3.49□□□□□ -1.85
NUP54-208ENST00000508604 CINPQ9BW66 212 aaPredicted RBP3.49□□□□□ -1.85
NUP54-208ENST00000508604 ZNF518BQ9C0D4 1074 aa3.49□□□□□ -1.85
NUP54-208ENST00000508604 ZCWPW1Q9H0M4 648 aa3.49□□□□□ -1.85
NUP54-208ENST00000508604 A1CFQ9NQ94 594 aaKnown RBP3.49□□□□□ -1.85
NUP54-208ENST00000508604 COG5Q9UP83 839 aa3.49□□□□□ -1.85
NUP54-208ENST00000508604 A8MVJ9 347 aa3.48□□□□□ -1.85
NUP54-208ENST00000508604 CCP110O43303 1012 aa3.48□□□□□ -1.85
NUP54-208ENST00000508604 ADRA1DP25100 572 aa3.48□□□□□ -1.85
NUP54-208ENST00000508604 PGDP52209 483 aa3.48□□□□□ -1.85
NUP54-208ENST00000508604 JAK3P52333 1124 aa3.48□□□□□ -1.85
NUP54-208ENST00000508604 TIAL1Q01085 375 aaKnown RBP eCLIP3.48□□□□□ -1.85
NUP54-208ENST00000508604 FHL3Q13643 280 aa3.48□□□□□ -1.85
NUP54-208ENST00000508604 DGKKQ5KSL6 1271 aa3.48□□□□□ -1.85
NUP54-208ENST00000508604 ZNF324BQ6AW86 544 aaPredicted RBP3.48□□□□□ -1.85
NUP54-208ENST00000508604 NR4A3Q92570 626 aa3.48□□□□□ -1.85
NUP54-208ENST00000508604 PIGKQ92643 395 aa3.48□□□□□ -1.85
NUP54-208ENST00000508604 ZBTB45Q96K62 511 aaPredicted RBP3.48□□□□□ -1.85
NUP54-208ENST00000508604 SF3B5Q9BWJ5 86 aaKnown RBP3.48□□□□□ -1.85
NUP54-208ENST00000508604 ARHGAP39Q9C0H5 1083 aa3.48□□□□□ -1.85
NUP54-208ENST00000508604 CAMSAP3Q9P1Y5 1249 aaPredicted RBP3.48□□□□□ -1.85
NUP54-208ENST00000508604 STEAP1Q9UHE8 339 aa3.48□□□□□ -1.85
NUP54-208ENST00000508604 ANAPC4Q9UJX5 808 aa3.48□□□□□ -1.85
NUP54-208ENST00000508604 FZD4Q9ULV1 537 aa3.48□□□□□ -1.85
NUP54-208ENST00000508604 TCF20Q9UGU0 1960 aaKnown RBP3.47□□□□□ -1.85
NUP54-208ENST00000508604 LOC102723971A0A1B0GUV8 181 aa3.47□□□□□ -1.85
NUP54-208ENST00000508604 RASSF9O75901 435 aa3.47□□□□□ -1.85
NUP54-208ENST00000508604 FGF3P11487 239 aaPredicted RBP3.47□□□□□ -1.85
NUP54-208ENST00000508604 ARFIP2P53365 341 aa3.47□□□□□ -1.85
NUP54-208ENST00000508604 PTGR1Q14914 329 aa3.47□□□□□ -1.85
NUP54-208ENST00000508604 ATAT1Q5SQI0 421 aa3.47□□□□□ -1.85
NUP54-208ENST00000508604 IFIT1BQ5T764 474 aaKnown RBP3.47□□□□□ -1.85
NUP54-208ENST00000508604 RFX6Q8HWS3 928 aa3.47□□□□□ -1.85
NUP54-208ENST00000508604 DENND1CQ8IV53 801 aa3.47□□□□□ -1.85
NUP54-208ENST00000508604 IQCF1Q8N6M8 205 aa3.47□□□□□ -1.85
NUP54-208ENST00000508604 ZNF668Q96K58 619 aaPredicted RBP3.47□□□□□ -1.85
NUP54-208ENST00000508604 LMLNQ96KR4 655 aa3.47□□□□□ -1.85
NUP54-208ENST00000508604 ASPSCR1Q9BZE9 553 aa3.47□□□□□ -1.85
NUP54-208ENST00000508604 RBM38Q9H0Z9 239 aaKnown RBP3.47□□□□□ -1.85
NUP54-208ENST00000508604 DNMT3BQ9UBC3 853 aaKnown RBP3.47□□□□□ -1.85
NUP54-208ENST00000508604 TMEM272A0A1B0GTI8 110 aa3.46□□□□□ -1.85
NUP54-208ENST00000508604 TMEM233B4DJY2 109 aa3.46□□□□□ -1.85
NUP54-208ENST00000508604 SNX2O60749 519 aa3.46□□□□□ -1.85
NUP54-208ENST00000508604 PIAS2O75928 621 aa3.46□□□□□ -1.85
NUP54-208ENST00000508604 CT47B1P0C2W7 299 aaPredicted RBP3.46□□□□□ -1.85
NUP54-208ENST00000508604 KITP10721 976 aa3.46□□□□□ -1.85
NUP54-208ENST00000508604 NPR1P16066 1061 aa3.46□□□□□ -1.85
NUP54-208ENST00000508604 EVA1CP58658 441 aa3.46□□□□□ -1.85
NUP54-208ENST00000508604 CCDC15Q0P6D6 951 aa3.46□□□□□ -1.85
NUP54-208ENST00000508604 NFATC4Q14934 902 aa3.46□□□□□ -1.85
NUP54-208ENST00000508604 INPP5JQ15735 1006 aaPredicted RBP3.46□□□□□ -1.85
NUP54-208ENST00000508604 GFI1BQ5VTD9 330 aa3.46□□□□□ -1.85
NUP54-208ENST00000508604 COL23A1Q86Y22 540 aaPredicted RBP3.46□□□□□ -1.85
Retrieved 100 of 20,778 RNA–protein pairs in 107.5 ms