RNA–Protein interactions for RNA: ENST00000506690.1

SQSTM1-211, Transcript of sequestosome 1, humanhuman

TSL 2

Gene SQSTM1, Length 2,405 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SQSTM1-211ENST00000506690 PSMD6Q15008 389 aa17.73■□□□□ 0.43
SQSTM1-211ENST00000506690 LGSNQ5TDP6 509 aa17.73■□□□□ 0.43
SQSTM1-211ENST00000506690 WDR75Q8IWA0 830 aaKnown RBP17.73■□□□□ 0.43
SQSTM1-211ENST00000506690 PIWIL2Q8TC59 973 aaKnown RBP17.73■□□□□ 0.43
SQSTM1-211ENST00000506690 CLMNQ96JQ2 1002 aa17.73■□□□□ 0.43
SQSTM1-211ENST00000506690 ZDHHC15Q96MV8 337 aa17.73■□□□□ 0.43
SQSTM1-211ENST00000506690 ZNF696Q9H7X3 374 aa17.73■□□□□ 0.43
SQSTM1-211ENST00000506690 SYNPO2Q9UMS6 1093 aa17.73■□□□□ 0.43
SQSTM1-211ENST00000506690 AVILO75366 819 aa17.73■□□□□ 0.43
SQSTM1-211ENST00000506690 TNNI1P19237 187 aa17.73■□□□□ 0.43
SQSTM1-211ENST00000506690 PRKCHP24723 683 aa17.73■□□□□ 0.43
SQSTM1-211ENST00000506690 NRLP54845 237 aa17.73■□□□□ 0.43
SQSTM1-211ENST00000506690 XKR9Q5GH70 373 aa17.73■□□□□ 0.43
SQSTM1-211ENST00000506690 DUS1LQ6P1R4 473 aaKnown RBP17.73■□□□□ 0.43
SQSTM1-211ENST00000506690 BORAQ6PGQ7 559 aa17.73■□□□□ 0.43
SQSTM1-211ENST00000506690 ZCCHC23Q6ZST2 131 aa17.73■□□□□ 0.43
SQSTM1-211ENST00000506690 HPS6Q86YV9 775 aa17.73■□□□□ 0.43
SQSTM1-211ENST00000506690 AHI1Q8N157 1196 aa17.73■□□□□ 0.43
SQSTM1-211ENST00000506690 FBXW8Q8N3Y1 598 aa17.73■□□□□ 0.43
SQSTM1-211ENST00000506690 HIPK4Q8NE63 616 aa17.73■□□□□ 0.43
SQSTM1-211ENST00000506690 DCUN1D1Q96GG9 259 aa17.73■□□□□ 0.43
SQSTM1-211ENST00000506690 IDI2Q9BXS1 227 aa17.73■□□□□ 0.43
SQSTM1-211ENST00000506690 AGO4Q9HCK5 861 aaKnown RBP17.73■□□□□ 0.43
SQSTM1-211ENST00000506690 PTPRJQ12913 1337 aa17.73■□□□□ 0.43
SQSTM1-211ENST00000506690 ITGAXP20702 1163 aa17.72■□□□□ 0.43
SQSTM1-211ENST00000506690 KDELR1P24390 212 aa17.72■□□□□ 0.43
SQSTM1-211ENST00000506690 ZNF132P52740 706 aa17.72■□□□□ 0.43
SQSTM1-211ENST00000506690 DCTN2Q13561 401 aaKnown RBP17.72■□□□□ 0.43
SQSTM1-211ENST00000506690 SMTNL2Q2TAL5 461 aa17.72■□□□□ 0.43
SQSTM1-211ENST00000506690 USP41Q3LFD5 358 aa17.72■□□□□ 0.43
SQSTM1-211ENST00000506690 NIPA1Q7RTP0 329 aa17.72■□□□□ 0.43
SQSTM1-211ENST00000506690 TRMT1LQ7Z2T5 733 aaKnown RBP17.72■□□□□ 0.43
SQSTM1-211ENST00000506690 THNSL1Q8IYQ7 743 aa17.72■□□□□ 0.43
SQSTM1-211ENST00000506690 NLGN1Q8N2Q7 840 aa17.72■□□□□ 0.43
SQSTM1-211ENST00000506690 LRRC43Q8N309 656 aa17.72■□□□□ 0.43
SQSTM1-211ENST00000506690 SAMD3Q8N6K7 520 aa17.72■□□□□ 0.43
SQSTM1-211ENST00000506690 CFAP36Q96G28 342 aa17.72■□□□□ 0.43
SQSTM1-211ENST00000506690 APOL6Q9BWW8 343 aa17.72■□□□□ 0.43
SQSTM1-211ENST00000506690 GRIP2Q9C0E4 1043 aa17.72■□□□□ 0.43
SQSTM1-211ENST00000506690 Q9H521 79 aa17.72■□□□□ 0.43
SQSTM1-211ENST00000506690 PLAC1Q9HBJ0 212 aa17.72■□□□□ 0.43
SQSTM1-211ENST00000506690 C6orf203Q9P0P8 240 aaPredicted RBP17.72■□□□□ 0.43
SQSTM1-211ENST00000506690 RAB26Q9ULW5 256 aa17.72■□□□□ 0.43
SQSTM1-211ENST00000506690 PCDHGB4Q9UN71 923 aa17.72■□□□□ 0.43
SQSTM1-211ENST00000506690 APOBEC2Q9Y235 224 aaKnown RBP17.72■□□□□ 0.43
SQSTM1-211ENST00000506690 PCDHGB5Q9Y5G0 923 aa17.72■□□□□ 0.43
SQSTM1-211ENST00000506690 CCDC160A6NGH7 325 aa17.72■□□□□ 0.43
SQSTM1-211ENST00000506690 EXTL3O43909 919 aa17.72■□□□□ 0.43
SQSTM1-211ENST00000506690 IL1R2P27930 398 aa17.72■□□□□ 0.43
SQSTM1-211ENST00000506690 PCSK6P29122 969 aa17.72■□□□□ 0.43
SQSTM1-211ENST00000506690 EIF3EP60228 445 aaKnown RBP17.72■□□□□ 0.43
SQSTM1-211ENST00000506690 CREB5Q02930 508 aa17.72■□□□□ 0.43
SQSTM1-211ENST00000506690 DBN1Q16643 649 aa17.72■□□□□ 0.43
SQSTM1-211ENST00000506690 TCHHL1Q5QJ38 904 aaPredicted RBP17.72■□□□□ 0.43
SQSTM1-211ENST00000506690 DEFB107AQ8IZN7 70 aa17.72■□□□□ 0.43
SQSTM1-211ENST00000506690 ARFGAP1Q8N6T3 406 aa17.72■□□□□ 0.43
SQSTM1-211ENST00000506690 ANKEF1Q9NU02 776 aa17.72■□□□□ 0.43
SQSTM1-211ENST00000506690 PCDHAC2Q9Y5I4 1007 aa17.72■□□□□ 0.43
SQSTM1-211ENST00000506690 APOC4-APOC2K7ER74 178 aa17.71■□□□□ 0.43
SQSTM1-211ENST00000506690 TRDMT1O14717 391 aaKnown RBP17.71■□□□□ 0.43
SQSTM1-211ENST00000506690 FAM189A1O60320 539 aa17.71■□□□□ 0.43
SQSTM1-211ENST00000506690 TNFAIP8O95379 198 aa17.71■□□□□ 0.43
SQSTM1-211ENST00000506690 LSM8O95777 96 aaKnown RBP17.71■□□□□ 0.43
SQSTM1-211ENST00000506690 GSRP00390 522 aa17.71■□□□□ 0.43
SQSTM1-211ENST00000506690 APOC2P02655 101 aa17.71■□□□□ 0.43
SQSTM1-211ENST00000506690 TBXAS1P24557 533 aaPredicted RBP17.71■□□□□ 0.43
SQSTM1-211ENST00000506690 MTTPP55157 894 aa17.71■□□□□ 0.43
SQSTM1-211ENST00000506690 APOFQ13790 326 aa17.71■□□□□ 0.43
SQSTM1-211ENST00000506690 BMPR2Q13873 1038 aa17.71■□□□□ 0.43
SQSTM1-211ENST00000506690 KCNT1Q5JUK3 1230 aa17.71■□□□□ 0.43
SQSTM1-211ENST00000506690 PQLC1Q8N2U9 271 aa17.71■□□□□ 0.43
SQSTM1-211ENST00000506690 DHX33Q9H6R0 707 aaKnown RBP17.71■□□□□ 0.43
SQSTM1-211ENST00000506690 NRDE2Q9H7Z3 1164 aa17.71■□□□□ 0.43
SQSTM1-211ENST00000506690 CYP4F11Q9HBI6 524 aa17.71■□□□□ 0.43
SQSTM1-211ENST00000506690 SMYD2Q9NRG4 433 aa17.71■□□□□ 0.43
SQSTM1-211ENST00000506690 PSMD13Q9UNM6 376 aa17.71■□□□□ 0.43
SQSTM1-211ENST00000506690 ARHGAP10A1A4S6 786 aa17.71■□□□□ 0.43
SQSTM1-211ENST00000506690 KLRG2A4D1S0 409 aaPredicted RBP17.71■□□□□ 0.43
SQSTM1-211ENST00000506690 CHADO15335 359 aa17.71■□□□□ 0.43
SQSTM1-211ENST00000506690 KRT7P08729 469 aa17.71■□□□□ 0.43
SQSTM1-211ENST00000506690 RBP3P10745 1247 aa17.71■□□□□ 0.43
SQSTM1-211ENST00000506690 SLC5A2P31639 672 aa17.71■□□□□ 0.43
SQSTM1-211ENST00000506690 YWHAZP63104 245 aaKnown RBP17.71■□□□□ 0.43
SQSTM1-211ENST00000506690 MYBPC1Q00872 1141 aa17.71■□□□□ 0.43
SQSTM1-211ENST00000506690 NDUFAF2Q8N183 169 aa17.71■□□□□ 0.43
SQSTM1-211ENST00000506690 IL31RAQ8NI17 732 aa17.71■□□□□ 0.43
SQSTM1-211ENST00000506690 CMTM5Q96DZ9 223 aa17.71■□□□□ 0.43
SQSTM1-211ENST00000506690 DEFB129Q9H1M3 183 aa17.71■□□□□ 0.43
SQSTM1-211ENST00000506690 POPDC2Q9HBU9 364 aa17.71■□□□□ 0.43
SQSTM1-211ENST00000506690 SLC9A2Q9UBY0 812 aa17.71■□□□□ 0.43
SQSTM1-211ENST00000506690 DNAJC16Q9Y2G8 782 aa17.71■□□□□ 0.43
SQSTM1-211ENST00000506690 NUB1Q9Y5A7 615 aa17.71■□□□□ 0.43
SQSTM1-211ENST00000506690 HMX2A2RU54 273 aa17.7■□□□□ 0.42
SQSTM1-211ENST00000506690 PPEF1O14829 653 aaPredicted RBP17.7■□□□□ 0.42
SQSTM1-211ENST00000506690 ITM2AO43736 263 aa17.7■□□□□ 0.42
SQSTM1-211ENST00000506690 UGT1A9O60656 530 aa17.7■□□□□ 0.42
SQSTM1-211ENST00000506690 LRCH4O75427 683 aa17.7■□□□□ 0.42
SQSTM1-211ENST00000506690 KRT38O76015 456 aa17.7■□□□□ 0.42
SQSTM1-211ENST00000506690 ACAT1P24752 427 aaKnown RBP17.7■□□□□ 0.42
SQSTM1-211ENST00000506690 TKFCQ3LXA3 575 aa17.7■□□□□ 0.42
Retrieved 100 of 20,778 RNA–protein pairs in 24.2 ms