RNA–Protein interactions for RNA: ENST00000498473.6

MSH5-SAPCD1-208, Transcript of MSH5-SAPCD1 readthrough (NMD candidate), humanhuman

APPRIS ALT2 TSL 1 (best)

Gene MSH5-SAPCD1, Length 2,216 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH5-SAPCD1-208ENST00000498473 COPS5Q92905 334 aa16.74■□□□□ 0.27
MSH5-SAPCD1-208ENST00000498473 APOPT1Q96IL0 206 aa16.74■□□□□ 0.27
MSH5-SAPCD1-208ENST00000498473 MIPEPQ99797 713 aa16.74■□□□□ 0.27
MSH5-SAPCD1-208ENST00000498473 CNPY3Q9BT09 278 aa16.74■□□□□ 0.27
MSH5-SAPCD1-208ENST00000498473 CYP3A43Q9HB55 503 aa16.74■□□□□ 0.27
MSH5-SAPCD1-208ENST00000498473 PNPLA8Q9NP80 782 aa16.74■□□□□ 0.27
MSH5-SAPCD1-208ENST00000498473 SPATS2LQ9NUQ6 558 aaKnown RBP16.74■□□□□ 0.27
MSH5-SAPCD1-208ENST00000498473 CNTN3Q9P232 1028 aa16.74■□□□□ 0.27
MSH5-SAPCD1-208ENST00000498473 PIK3R2O00459 728 aa16.73■□□□□ 0.27
MSH5-SAPCD1-208ENST00000498473 CHADO15335 359 aa16.73■□□□□ 0.27
MSH5-SAPCD1-208ENST00000498473 CSDE1O75534 798 aaKnown RBP16.73■□□□□ 0.27
MSH5-SAPCD1-208ENST00000498473 CALB2P22676 271 aa16.73■□□□□ 0.27
MSH5-SAPCD1-208ENST00000498473 RASSF2P50749 326 aa16.73■□□□□ 0.27
MSH5-SAPCD1-208ENST00000498473 SREBF2Q12772 1141 aa16.73■□□□□ 0.27
MSH5-SAPCD1-208ENST00000498473 PRKD1Q15139 912 aaPredicted RBP16.73■□□□□ 0.27
MSH5-SAPCD1-208ENST00000498473 C1orf228Q6PIY5 440 aa16.73■□□□□ 0.27
MSH5-SAPCD1-208ENST00000498473 KCNV2Q8TDN2 545 aa16.73■□□□□ 0.27
MSH5-SAPCD1-208ENST00000498473 HHIPL1Q96JK4 782 aa16.73■□□□□ 0.27
MSH5-SAPCD1-208ENST00000498473 HEXIM2Q96MH2 286 aaKnown RBP16.73■□□□□ 0.27
MSH5-SAPCD1-208ENST00000498473 SPATA33Q96N06 139 aa16.73■□□□□ 0.27
MSH5-SAPCD1-208ENST00000498473 RNF157Q96PX1 679 aa16.73■□□□□ 0.27
MSH5-SAPCD1-208ENST00000498473 TSSK1BQ9BXA7 367 aa16.73■□□□□ 0.27
MSH5-SAPCD1-208ENST00000498473 IFT122Q9HBG6 1241 aa16.73■□□□□ 0.27
MSH5-SAPCD1-208ENST00000498473 PLAC1Q9HBJ0 212 aa16.73■□□□□ 0.27
MSH5-SAPCD1-208ENST00000498473 PFKMP08237 780 aa16.73■□□□□ 0.27
MSH5-SAPCD1-208ENST00000498473 PYGBP11216 843 aa16.73■□□□□ 0.27
MSH5-SAPCD1-208ENST00000498473 TM4SF4P48230 202 aa16.73■□□□□ 0.27
MSH5-SAPCD1-208ENST00000498473 YWHAGP61981 247 aaKnown RBP eCLIP16.73■□□□□ 0.27
MSH5-SAPCD1-208ENST00000498473 AMHR2Q16671 573 aa16.73■□□□□ 0.27
MSH5-SAPCD1-208ENST00000498473 FAM183BPQ6ZVS7 135 aa16.73■□□□□ 0.27
MSH5-SAPCD1-208ENST00000498473 GPRC5AQ8NFJ5 357 aa16.73■□□□□ 0.27
MSH5-SAPCD1-208ENST00000498473 FAM111AQ96PZ2 611 aa16.73■□□□□ 0.27
MSH5-SAPCD1-208ENST00000498473 HEY2Q9UBP5 337 aa16.73■□□□□ 0.27
MSH5-SAPCD1-208ENST00000498473 TTLL3Q9Y4R7 772 aa16.73■□□□□ 0.27
MSH5-SAPCD1-208ENST00000498473 E5RJQ4 531 aa16.72■□□□□ 0.27
MSH5-SAPCD1-208ENST00000498473 H7C0C1 242 aa16.72■□□□□ 0.27
MSH5-SAPCD1-208ENST00000498473 FAM155BO75949 473 aa16.72■□□□□ 0.27
MSH5-SAPCD1-208ENST00000498473 TPBGLP0DKB5 382 aa16.72■□□□□ 0.27
MSH5-SAPCD1-208ENST00000498473 PDGFRAP16234 1089 aa16.72■□□□□ 0.27
MSH5-SAPCD1-208ENST00000498473 ATICP31939 592 aa16.72■□□□□ 0.27
MSH5-SAPCD1-208ENST00000498473 ATP5OP48047 213 aa16.72■□□□□ 0.27
MSH5-SAPCD1-208ENST00000498473 YWHAZP63104 245 aaKnown RBP16.72■□□□□ 0.27
MSH5-SAPCD1-208ENST00000498473 TFDP2Q14188 446 aa16.72■□□□□ 0.27
MSH5-SAPCD1-208ENST00000498473 NAA25Q14CX7 972 aa16.72■□□□□ 0.27
MSH5-SAPCD1-208ENST00000498473 SLC10A6Q3KNW5 377 aa16.72■□□□□ 0.27
MSH5-SAPCD1-208ENST00000498473 FAM47CQ5HY64 1035 aa16.72■□□□□ 0.27
MSH5-SAPCD1-208ENST00000498473 WASHC2DQ5SRD0 308 aa16.72■□□□□ 0.27
MSH5-SAPCD1-208ENST00000498473 CCDC62Q6P9F0 684 aa16.72■□□□□ 0.27
MSH5-SAPCD1-208ENST00000498473 BZW1Q7L1Q6 419 aaKnown RBP16.72■□□□□ 0.27
MSH5-SAPCD1-208ENST00000498473 PLD5Q8N7P1 536 aa16.72■□□□□ 0.27
MSH5-SAPCD1-208ENST00000498473 ENDOVQ8N8Q3 282 aaKnown RBP16.72■□□□□ 0.27
MSH5-SAPCD1-208ENST00000498473 STK32AQ8WU08 396 aa16.72■□□□□ 0.27
MSH5-SAPCD1-208ENST00000498473 FAF2Q96CS3 445 aa16.72■□□□□ 0.27
MSH5-SAPCD1-208ENST00000498473 RTP4Q96DX8 246 aa16.72■□□□□ 0.27
MSH5-SAPCD1-208ENST00000498473 PTCD3Q96EY7 689 aaKnown RBP16.72■□□□□ 0.27
MSH5-SAPCD1-208ENST00000498473 PRR11Q96HE9 360 aaPredicted RBP16.72■□□□□ 0.27
MSH5-SAPCD1-208ENST00000498473 TRIM55Q9BYV6 548 aa16.72■□□□□ 0.27
MSH5-SAPCD1-208ENST00000498473 DENND2DQ9H6A0 471 aaPredicted RBP16.72■□□□□ 0.27
MSH5-SAPCD1-208ENST00000498473 ARL8BQ9NVJ2 186 aa16.72■□□□□ 0.27
MSH5-SAPCD1-208ENST00000498473 A0A0G2JND7 137 aa16.72■□□□□ 0.27
MSH5-SAPCD1-208ENST00000498473 TGDSO95455 350 aa16.72■□□□□ 0.27
MSH5-SAPCD1-208ENST00000498473 INHBAP08476 426 aa16.72■□□□□ 0.27
MSH5-SAPCD1-208ENST00000498473 BGNP21810 368 aa16.72■□□□□ 0.27
MSH5-SAPCD1-208ENST00000498473 NDST1P52848 882 aa16.72■□□□□ 0.27
MSH5-SAPCD1-208ENST00000498473 CCDC14Q49A88 953 aa16.72■□□□□ 0.27
MSH5-SAPCD1-208ENST00000498473 OR6B2Q6IFH4 312 aa16.72■□□□□ 0.27
MSH5-SAPCD1-208ENST00000498473 CDHR3Q6ZTQ4 885 aa16.72■□□□□ 0.27
MSH5-SAPCD1-208ENST00000498473 DPH6Q7L8W6 267 aa16.72■□□□□ 0.27
MSH5-SAPCD1-208ENST00000498473 PQLC3Q8N755 202 aa16.72■□□□□ 0.27
MSH5-SAPCD1-208ENST00000498473 TTC8Q8TAM2 541 aa16.72■□□□□ 0.27
MSH5-SAPCD1-208ENST00000498473 SKA1Q96BD8 255 aa16.72■□□□□ 0.27
MSH5-SAPCD1-208ENST00000498473 NFKBIZQ9BYH8 718 aa16.72■□□□□ 0.27
MSH5-SAPCD1-208ENST00000498473 RNPEPQ9H4A4 650 aa16.72■□□□□ 0.27
MSH5-SAPCD1-208ENST00000498473 PDZD7Q9H5P4 517 aa16.72■□□□□ 0.27
MSH5-SAPCD1-208ENST00000498473 RAB6BQ9NRW1 208 aa16.72■□□□□ 0.27
MSH5-SAPCD1-208ENST00000498473 PRMT7Q9NVM4 692 aaPredicted RBP16.72■□□□□ 0.27
MSH5-SAPCD1-208ENST00000498473 RNF186Q9NXI6 227 aa16.72■□□□□ 0.27
MSH5-SAPCD1-208ENST00000498473 HBP1O60381 514 aa16.71■□□□□ 0.27
MSH5-SAPCD1-208ENST00000498473 DNAJC6O75061 913 aa16.71■□□□□ 0.27
MSH5-SAPCD1-208ENST00000498473 SPAG6O75602 509 aa16.71■□□□□ 0.27
MSH5-SAPCD1-208ENST00000498473 GRAP2O75791 330 aa16.71■□□□□ 0.27
MSH5-SAPCD1-208ENST00000498473 C22orf31O95567 290 aa16.71■□□□□ 0.27
MSH5-SAPCD1-208ENST00000498473 DLDP09622 509 aaKnown RBP16.71■□□□□ 0.27
MSH5-SAPCD1-208ENST00000498473 MCF2P10911 925 aa16.71■□□□□ 0.27
MSH5-SAPCD1-208ENST00000498473 GCLCP48506 637 aaPredicted RBP16.71■□□□□ 0.27
MSH5-SAPCD1-208ENST00000498473 INCA1Q0VD86 236 aa16.71■□□□□ 0.27
MSH5-SAPCD1-208ENST00000498473 CDO1Q16878 200 aa16.71■□□□□ 0.27
MSH5-SAPCD1-208ENST00000498473 FAM187BQ17R55 369 aa16.71■□□□□ 0.27
MSH5-SAPCD1-208ENST00000498473 LCLAT1Q6UWP7 414 aa16.71■□□□□ 0.27
MSH5-SAPCD1-208ENST00000498473 CAND1Q86VP6 1230 aaKnown RBP16.71■□□□□ 0.27
MSH5-SAPCD1-208ENST00000498473 FBXO16Q8IX29 292 aaPredicted RBP16.71■□□□□ 0.27
MSH5-SAPCD1-208ENST00000498473 TTC17Q96AE7 1141 aa16.71■□□□□ 0.27
MSH5-SAPCD1-208ENST00000498473 HPDLQ96IR7 371 aa16.71■□□□□ 0.27
MSH5-SAPCD1-208ENST00000498473 CADM1Q9BY67 442 aaKnown RBP16.71■□□□□ 0.27
MSH5-SAPCD1-208ENST00000498473 SMARCAD1Q9H4L7 1026 aa16.71■□□□□ 0.27
MSH5-SAPCD1-208ENST00000498473 GPATCH2LQ9NWQ4 482 aa16.71■□□□□ 0.27
MSH5-SAPCD1-208ENST00000498473 PAK5Q9P286 719 aa16.71■□□□□ 0.27
MSH5-SAPCD1-208ENST00000498473 BARX2Q9UMQ3 279 aaPredicted RBP16.71■□□□□ 0.27
MSH5-SAPCD1-208ENST00000498473 KAT6AQ92794 2004 aa16.71■□□□□ 0.27
MSH5-SAPCD1-208ENST00000498473 PLXNB2O15031 1838 aa16.71■□□□□ 0.26
Retrieved 100 of 20,778 RNA–protein pairs in 31.4 ms