RNA–Protein interactions for RNA: ENST00000498213.1

USP54-217, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 4

Gene USP54, Length 815 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-217ENST00000498213 ST8SIA2Q92186 375 aa4.58□□□□□ -1.68
USP54-217ENST00000498213 PPP2R3CQ969Q6 453 aa4.58□□□□□ -1.68
USP54-217ENST00000498213 FAM193BQ96PV7 902 aaPredicted RBP4.58□□□□□ -1.68
USP54-217ENST00000498213 ANO3Q9BYT9 981 aa4.58□□□□□ -1.68
USP54-217ENST00000498213 LMAN2LQ9H0V9 348 aa4.58□□□□□ -1.68
USP54-217ENST00000498213 S1PR5Q9H228 398 aa4.58□□□□□ -1.68
USP54-217ENST00000498213 MS4A5Q9H3V2 200 aa4.58□□□□□ -1.68
USP54-217ENST00000498213 ABHD16BQ9H3Z7 469 aa4.58□□□□□ -1.68
USP54-217ENST00000498213 TLE6Q9H808 572 aa4.58□□□□□ -1.68
USP54-217ENST00000498213 PDGFCQ9NRA1 345 aa4.58□□□□□ -1.68
USP54-217ENST00000498213 ATP8A2Q9NTI2 1148 aa4.58□□□□□ -1.68
USP54-217ENST00000498213 ING3Q9NXR8 418 aa4.58□□□□□ -1.68
USP54-217ENST00000498213 FBXO40Q9UH90 709 aa4.58□□□□□ -1.68
USP54-217ENST00000498213 SAP30BPQ9UHR5 308 aaKnown RBP4.58□□□□□ -1.68
USP54-217ENST00000498213 GMEB2Q9UKD1 530 aa4.58□□□□□ -1.68
USP54-217ENST00000498213 ADAMTS5Q9UNA0 930 aa4.58□□□□□ -1.68
USP54-217ENST00000498213 FPGT-TNNI3KV9GXZ4 949 aa4.58□□□□□ -1.68
USP54-217ENST00000498213 PTPRSQ13332 1948 aa4.58□□□□□ -1.68
USP54-217ENST00000498213 CDK5RAP2Q96SN8 1893 aa4.58□□□□□ -1.68
USP54-217ENST00000498213 ASXL3Q9C0F0 2248 aa4.57□□□□□ -1.68
USP54-217ENST00000498213 TEX15Q9BXT5 2789 aa4.57□□□□□ -1.68
USP54-217ENST00000498213 A0A0A6YYK5 440 aaPredicted RBP4.57□□□□□ -1.68
USP54-217ENST00000498213 PRSS38A1L453 326 aa4.57□□□□□ -1.68
USP54-217ENST00000498213 TMEM8BA6NDV4 472 aa4.57□□□□□ -1.68
USP54-217ENST00000498213 PRAMEF4O60810 478 aa4.57□□□□□ -1.68
USP54-217ENST00000498213 HMMRO75330 724 aa4.57□□□□□ -1.68
USP54-217ENST00000498213 WEE2P0C1S8 567 aa4.57□□□□□ -1.68
USP54-217ENST00000498213 CLEC2LP0C7M8 214 aa4.57□□□□□ -1.68
USP54-217ENST00000498213 MCAMP43121 646 aa4.57□□□□□ -1.68
USP54-217ENST00000498213 SCNN1GP51170 649 aa4.57□□□□□ -1.68
USP54-217ENST00000498213 RARSP54136 660 aaKnown RBP4.57□□□□□ -1.68
USP54-217ENST00000498213 GYS2P54840 703 aa4.57□□□□□ -1.68
USP54-217ENST00000498213 CSTF1Q05048 431 aaKnown RBP4.57□□□□□ -1.68
USP54-217ENST00000498213 GABPAQ06546 454 aa4.57□□□□□ -1.68
USP54-217ENST00000498213 CD69Q07108 199 aa4.57□□□□□ -1.68
USP54-217ENST00000498213 TFCP2Q12800 502 aa4.57□□□□□ -1.68
USP54-217ENST00000498213 PTGISQ16647 500 aa4.57□□□□□ -1.68
USP54-217ENST00000498213 PLEKHG4Q58EX7 1191 aa4.57□□□□□ -1.68
USP54-217ENST00000498213 TTC39AQ5SRH9 613 aa4.57□□□□□ -1.68
USP54-217ENST00000498213 ZSCAN25Q6NSZ9 544 aa4.57□□□□□ -1.68
USP54-217ENST00000498213 GIMAP6Q6P9H5 292 aa4.57□□□□□ -1.68
USP54-217ENST00000498213 MAPKAPK5Q8IW41 473 aa4.57□□□□□ -1.68
USP54-217ENST00000498213 RPAP2Q8IXW5 612 aaPredicted RBP4.57□□□□□ -1.68
USP54-217ENST00000498213 MAML2Q8IZL2 1156 aaPredicted RBP4.57□□□□□ -1.68
USP54-217ENST00000498213 SPICE1Q8N0Z3 855 aa4.57□□□□□ -1.68
USP54-217ENST00000498213 DBF4BQ8NFT6 615 aa4.57□□□□□ -1.68
USP54-217ENST00000498213 AFAP1L1Q8TED9 768 aa4.57□□□□□ -1.68
USP54-217ENST00000498213 ZNF384Q8TF68 577 aa4.57□□□□□ -1.68
USP54-217ENST00000498213 NEU4Q8WWR8 484 aaPredicted RBP4.57□□□□□ -1.68
USP54-217ENST00000498213 RSAD2Q8WXG1 361 aa4.57□□□□□ -1.68
USP54-217ENST00000498213 NEUROD6Q96NK8 337 aa4.57□□□□□ -1.68
USP54-217ENST00000498213 NEK1Q96PY6 1258 aa4.57□□□□□ -1.68
USP54-217ENST00000498213 TTC1Q99614 292 aa4.57□□□□□ -1.68
USP54-217ENST00000498213 SOX7Q9BT81 388 aa4.57□□□□□ -1.68
USP54-217ENST00000498213 CRNKL1Q9BZJ0 848 aaKnown RBP4.57□□□□□ -1.68
USP54-217ENST00000498213 DDX24Q9GZR7 859 aaKnown RBP eCLIP4.57□□□□□ -1.68
USP54-217ENST00000498213 ZNF703Q9H7S9 590 aaPredicted RBP4.57□□□□□ -1.68
USP54-217ENST00000498213 IFT22Q9H7X7 185 aa4.57□□□□□ -1.68
USP54-217ENST00000498213 SLTMQ9NWH9 1034 aaKnown RBP eCLIP4.57□□□□□ -1.68
USP54-217ENST00000498213 NOB1Q9ULX3 412 aaKnown RBP4.57□□□□□ -1.68
USP54-217ENST00000498213 CA14Q9ULX7 337 aa4.57□□□□□ -1.68
USP54-217ENST00000498213 TMX2Q9Y320 296 aa4.57□□□□□ -1.68
USP54-217ENST00000498213 Q9Y3F1 56 aa4.57□□□□□ -1.68
USP54-217ENST00000498213 NUMBLQ9Y6R0 609 aa4.57□□□□□ -1.68
USP54-217ENST00000498213 SPTAN1Q13813 2472 aaKnown RBP4.57□□□□□ -1.68
USP54-217ENST00000498213 A0A1W2PRG0 241 aa4.56□□□□□ -1.68
USP54-217ENST00000498213 PYCARD-AS1I3L0S3 204 aa4.56□□□□□ -1.68
USP54-217ENST00000498213 NARSO43776 548 aaKnown RBP4.56□□□□□ -1.68
USP54-217ENST00000498213 ULK1O75385 1050 aa4.56□□□□□ -1.68
USP54-217ENST00000498213 KCNK5O95279 499 aa4.56□□□□□ -1.68
USP54-217ENST00000498213 PARNO95453 639 aaKnown RBP4.56□□□□□ -1.68
USP54-217ENST00000498213 LY86O95711 162 aa4.56□□□□□ -1.68
USP54-217ENST00000498213 CXCL10P02778 98 aa4.56□□□□□ -1.68
USP54-217ENST00000498213 MMP1P03956 469 aa4.56□□□□□ -1.68
USP54-217ENST00000498213 RB1P06400 928 aa4.56□□□□□ -1.68
USP54-217ENST00000498213 HK1P19367 917 aa4.56□□□□□ -1.68
USP54-217ENST00000498213 ADORA1P30542 326 aa4.56□□□□□ -1.68
USP54-217ENST00000498213 SOX5P35711 763 aa4.56□□□□□ -1.68
USP54-217ENST00000498213 TECP42680 631 aa4.56□□□□□ -1.68
USP54-217ENST00000498213 MANFP55145 182 aaKnown RBP4.56□□□□□ -1.68
USP54-217ENST00000498213 ATP8B2P98198 1209 aa4.56□□□□□ -1.68
USP54-217ENST00000498213 PURAQ00577 322 aaKnown RBP4.56□□□□□ -1.68
USP54-217ENST00000498213 SRSF1Q07955 248 aaKnown RBP eCLIP4.56□□□□□ -1.68
USP54-217ENST00000498213 STRN3Q13033 797 aa4.56□□□□□ -1.68
USP54-217ENST00000498213 DHCR24Q15392 516 aa4.56□□□□□ -1.68
USP54-217ENST00000498213 FAM214AQ32MH5 1076 aa4.56□□□□□ -1.68
USP54-217ENST00000498213 CCDC184Q52MB2 194 aa4.56□□□□□ -1.68
USP54-217ENST00000498213 ZKSCAN2Q63HK3 967 aa4.56□□□□□ -1.68
USP54-217ENST00000498213 APBB1IPQ7Z5R6 666 aaPredicted RBP4.56□□□□□ -1.68
USP54-217ENST00000498213 FAM133AQ8N9E0 248 aa4.56□□□□□ -1.68
USP54-217ENST00000498213 PIK3C3Q8NEB9 887 aa4.56□□□□□ -1.68
USP54-217ENST00000498213 MDGA1Q8NFP4 955 aa4.56□□□□□ -1.68
USP54-217ENST00000498213 OR14C36Q8NHC7 312 aa4.56□□□□□ -1.68
USP54-217ENST00000498213 TGFBRAP1Q8WUH2 860 aa4.56□□□□□ -1.68
USP54-217ENST00000498213 LRIG1Q96JA1 1093 aa4.56□□□□□ -1.68
USP54-217ENST00000498213 MEIS3Q99687 375 aa4.56□□□□□ -1.68
USP54-217ENST00000498213 CPPED1Q9BRF8 314 aaPredicted RBP4.56□□□□□ -1.68
USP54-217ENST00000498213 MTG1Q9BT17 334 aaPredicted RBP4.56□□□□□ -1.68
USP54-217ENST00000498213 TEX13BQ9BXU2 312 aa4.56□□□□□ -1.68
USP54-217ENST00000498213 IFIH1Q9BYX4 1025 aaKnown RBP4.56□□□□□ -1.68
Retrieved 100 of 20,778 RNA–protein pairs in 28.8 ms