RNA–Protein interactions for RNA: ENST00000496458.1

SF3B1-212, Transcript of splicing factor 3b subunit 1, humanhuman

TSL 2

Gene SF3B1, Length 475 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3B1-212ENST00000496458 LINC01465Q8N7H1 131 aa6.74□□□□□ -1.33
SF3B1-212ENST00000496458 RNF152Q8N8N0 203 aa6.74□□□□□ -1.33
SF3B1-212ENST00000496458 NGDNQ8NEJ9 315 aaKnown RBP6.74□□□□□ -1.33
SF3B1-212ENST00000496458 ZDHHC12Q96GR4 267 aa6.74□□□□□ -1.33
SF3B1-212ENST00000496458 CCDC136Q96JN2 1154 aa6.74□□□□□ -1.33
SF3B1-212ENST00000496458 FAM227BQ96M60 508 aa6.74□□□□□ -1.33
SF3B1-212ENST00000496458 NRIP3Q9NQ35 241 aa6.74□□□□□ -1.33
SF3B1-212ENST00000496458 GJB4Q9NTQ9 266 aa6.74□□□□□ -1.33
SF3B1-212ENST00000496458 RNF7Q9UBF6 113 aa6.74□□□□□ -1.33
SF3B1-212ENST00000496458 COL3A1P02461 1466 aaPredicted RBP6.73□□□□□ -1.33
SF3B1-212ENST00000496458 CLCA1A8K7I4 914 aa6.73□□□□□ -1.33
SF3B1-212ENST00000496458 BTBD19C9JJ37 291 aa6.73□□□□□ -1.33
SF3B1-212ENST00000496458 TMEM232C9JQI7 657 aa6.73□□□□□ -1.33
SF3B1-212ENST00000496458 ADRA1DP25100 572 aa6.73□□□□□ -1.33
SF3B1-212ENST00000496458 HTR7P34969 479 aa6.73□□□□□ -1.33
SF3B1-212ENST00000496458 ARHGAP25P42331 645 aa6.73□□□□□ -1.33
SF3B1-212ENST00000496458 CLCA4Q14CN2 919 aa6.73□□□□□ -1.33
SF3B1-212ENST00000496458 HSP90AB2PQ58FF8 381 aa6.73□□□□□ -1.33
SF3B1-212ENST00000496458 MIS18BP1Q6P0N0 1132 aa6.73□□□□□ -1.33
SF3B1-212ENST00000496458 CRTC1Q6UUV9 634 aa6.73□□□□□ -1.33
SF3B1-212ENST00000496458 KRT28Q7Z3Y7 464 aa6.73□□□□□ -1.33
SF3B1-212ENST00000496458 PJA1Q8NG27 643 aa6.73□□□□□ -1.33
SF3B1-212ENST00000496458 MBD3L2Q8NHZ7 208 aaPredicted RBP6.73□□□□□ -1.33
SF3B1-212ENST00000496458 VPS50Q96JG6 964 aa6.73□□□□□ -1.33
SF3B1-212ENST00000496458 HS6ST2Q96MM7 605 aa6.73□□□□□ -1.33
SF3B1-212ENST00000496458 EFHD1Q9BUP0 239 aa6.73□□□□□ -1.33
SF3B1-212ENST00000496458 ZNF70Q9UC06 446 aaPredicted RBP6.73□□□□□ -1.33
SF3B1-212ENST00000496458 ZNF804BA4D1E1 1349 aa6.73□□□□□ -1.33
SF3B1-212ENST00000496458 APOL1O14791 398 aa6.72□□□□□ -1.33
SF3B1-212ENST00000496458 ZNF81P51508 661 aa6.72□□□□□ -1.33
SF3B1-212ENST00000496458 LARS2Q15031 903 aaKnown RBP6.72□□□□□ -1.33
SF3B1-212ENST00000496458 SLC2A7Q6PXP3 512 aa6.72□□□□□ -1.33
SF3B1-212ENST00000496458 DCDC5Q6ZRR9 648 aa6.72□□□□□ -1.33
SF3B1-212ENST00000496458 CNGA4Q8IV77 575 aa6.72□□□□□ -1.33
SF3B1-212ENST00000496458 P3H2Q8IVL5 708 aa6.72□□□□□ -1.33
SF3B1-212ENST00000496458 GALNT16Q8N428 558 aa6.72□□□□□ -1.33
SF3B1-212ENST00000496458 ZNF778Q96MU6 729 aa6.72□□□□□ -1.33
SF3B1-212ENST00000496458 NAA15Q9BXJ9 866 aaKnown RBP6.72□□□□□ -1.33
SF3B1-212ENST00000496458 MAGEB5Q9BZ81 275 aa6.72□□□□□ -1.33
SF3B1-212ENST00000496458 USP29Q9HBJ7 922 aa6.72□□□□□ -1.33
SF3B1-212ENST00000496458 KLHL13Q9P2N7 655 aa6.72□□□□□ -1.33
SF3B1-212ENST00000496458 MYO1AQ9UBC5 1043 aa6.72□□□□□ -1.33
SF3B1-212ENST00000496458 TTBK1Q5TCY1 1321 aaPredicted RBP6.72□□□□□ -1.33
SF3B1-212ENST00000496458 WDR17Q8IZU2 1322 aa6.72□□□□□ -1.33
SF3B1-212ENST00000496458 COL15A1P39059 1388 aa6.71□□□□□ -1.33
SF3B1-212ENST00000496458 SMIM35A0A1B0GVV1 85 aa6.71□□□□□ -1.34
SF3B1-212ENST00000496458 A0A1W2PPC4 97 aa6.71□□□□□ -1.34
SF3B1-212ENST00000496458 AREL1O15033 823 aa6.71□□□□□ -1.34
SF3B1-212ENST00000496458 CA12O43570 354 aa6.71□□□□□ -1.34
SF3B1-212ENST00000496458 TMEM225BP0DP42 221 aa6.71□□□□□ -1.34
SF3B1-212ENST00000496458 MYL4P12829 197 aa6.71□□□□□ -1.34
SF3B1-212ENST00000496458 SSBP2P81877 361 aaPredicted RBP6.71□□□□□ -1.34
SF3B1-212ENST00000496458 TXNL4AP83876 142 aaKnown RBP6.71□□□□□ -1.34
SF3B1-212ENST00000496458 GPS1Q13098 491 aa6.71□□□□□ -1.34
SF3B1-212ENST00000496458 HLTFQ14527 1009 aaKnown RBP eCLIP6.71□□□□□ -1.34
SF3B1-212ENST00000496458 KCNB1Q14721 858 aa6.71□□□□□ -1.34
SF3B1-212ENST00000496458 BEND5Q7L4P6 421 aa6.71□□□□□ -1.34
SF3B1-212ENST00000496458 PNPLA1Q8N8W4 532 aa6.71□□□□□ -1.34
SF3B1-212ENST00000496458 INO80B-WBP1J3KQ70 363 aa6.7□□□□□ -1.34
SF3B1-212ENST00000496458 WDR47O94967 919 aa6.7□□□□□ -1.34
SF3B1-212ENST00000496458 CFHR3Q02985 330 aa6.7□□□□□ -1.34
SF3B1-212ENST00000496458 FHL3Q13643 280 aa6.7□□□□□ -1.34
SF3B1-212ENST00000496458 ZNF268Q14587 947 aaPredicted RBP6.7□□□□□ -1.34
SF3B1-212ENST00000496458 MFSD13AQ14CX5 517 aa6.7□□□□□ -1.34
SF3B1-212ENST00000496458 C4orf46Q504U0 113 aa6.7□□□□□ -1.34
SF3B1-212ENST00000496458 GRHL2Q6ISB3 625 aa6.7□□□□□ -1.34
SF3B1-212ENST00000496458 C12orf76Q8N812 135 aaPredicted RBP6.7□□□□□ -1.34
SF3B1-212ENST00000496458 CCDC150Q8NCX0 1101 aa6.7□□□□□ -1.34
SF3B1-212ENST00000496458 EDC3Q96F86 508 aaKnown RBP6.7□□□□□ -1.34
SF3B1-212ENST00000496458 KRTAP17-1Q9BYP8 105 aa6.7□□□□□ -1.34
SF3B1-212ENST00000496458 ZBTB26Q9HCK0 441 aa6.7□□□□□ -1.34
SF3B1-212ENST00000496458 STARD7Q9NQZ5 370 aa6.7□□□□□ -1.34
SF3B1-212ENST00000496458 GEMIN8Q9NWZ8 242 aaKnown RBP6.7□□□□□ -1.34
SF3B1-212ENST00000496458 KCNU1A8MYU2 1149 aa6.69□□□□□ -1.34
SF3B1-212ENST00000496458 H3BNC9 293 aa6.69□□□□□ -1.34
SF3B1-212ENST00000496458 COQ9O75208 318 aa6.69□□□□□ -1.34
SF3B1-212ENST00000496458 HMGB1P09429 215 aaKnown RBP6.69□□□□□ -1.34
SF3B1-212ENST00000496458 ARP10275 920 aa6.69□□□□□ -1.34
SF3B1-212ENST00000496458 SFPQP23246 707 aaKnown RBP eCLIP6.69□□□□□ -1.34
SF3B1-212ENST00000496458 PMS2P11Q13670 270 aa6.69□□□□□ -1.34
SF3B1-212ENST00000496458 KLF9Q13886 244 aaPredicted RBP6.69□□□□□ -1.34
SF3B1-212ENST00000496458 LONRF1Q17RB8 773 aa6.69□□□□□ -1.34
SF3B1-212ENST00000496458 FAXCQ5TGI0 409 aa6.69□□□□□ -1.34
SF3B1-212ENST00000496458 MORN5Q5VZ52 161 aa6.69□□□□□ -1.34
SF3B1-212ENST00000496458 ABLIM2Q6H8Q1 611 aa6.69□□□□□ -1.34
SF3B1-212ENST00000496458 ZNF813Q6ZN06 617 aa6.69□□□□□ -1.34
SF3B1-212ENST00000496458 SUN3Q8TAQ9 357 aa6.69□□□□□ -1.34
SF3B1-212ENST00000496458 PNISRQ8TF01 805 aaKnown RBP6.69□□□□□ -1.34
SF3B1-212ENST00000496458 SMG7Q92540 1137 aaKnown RBP6.69□□□□□ -1.34
SF3B1-212ENST00000496458 ZC3H10Q96K80 434 aaKnown RBP6.69□□□□□ -1.34
SF3B1-212ENST00000496458 COLEC11Q9BWP8 271 aa6.69□□□□□ -1.34
SF3B1-212ENST00000496458 SCAF8Q9UPN6 1271 aaKnown RBP6.69□□□□□ -1.34
SF3B1-212ENST00000496458 NISCHQ9Y2I1 1504 aa6.69□□□□□ -1.34
SF3B1-212ENST00000496458 LOC105378220A0A1B0GUY1 285 aaPredicted RBP6.68□□□□□ -1.34
SF3B1-212ENST00000496458 CLIC1O00299 241 aa6.68□□□□□ -1.34
SF3B1-212ENST00000496458 NCK2O43639 380 aa6.68□□□□□ -1.34
SF3B1-212ENST00000496458 CCNT2O60583 730 aaKnown RBP6.68□□□□□ -1.34
SF3B1-212ENST00000496458 PRAMEF2O60811 474 aa6.68□□□□□ -1.34
SF3B1-212ENST00000496458 CAND2O75155 1236 aa6.68□□□□□ -1.34
SF3B1-212ENST00000496458 RNF8O76064 485 aa6.68□□□□□ -1.34
Retrieved 100 of 20,778 RNA–protein pairs in 27.8 ms