RNA–Protein interactions for RNA: ENST00000496043.5

PTPRF-214, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 5

Gene PTPRF, Length 415 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-214ENST00000496043 SEMA4GQ9NTN9 838 aa13.43□□□□□ -0.26
PTPRF-214ENST00000496043 OSER1Q9NX31 292 aa13.43□□□□□ -0.26
PTPRF-214ENST00000496043 DNMT3LQ9UJW3 386 aa13.43□□□□□ -0.26
PTPRF-214ENST00000496043 LSM7Q9UK45 103 aaKnown RBP13.43□□□□□ -0.26
PTPRF-214ENST00000496043 SPTBN4Q9H254 2564 aa13.42□□□□□ -0.26
PTPRF-214ENST00000496043 TRIM49BA6NDI0 452 aa13.42□□□□□ -0.26
PTPRF-214ENST00000496043 TBC1D3BA6NDS4 549 aa13.42□□□□□ -0.26
PTPRF-214ENST00000496043 CYP26A1O43174 497 aa13.42□□□□□ -0.26
PTPRF-214ENST00000496043 HOXC11O43248 304 aaPredicted RBP13.42□□□□□ -0.26
PTPRF-214ENST00000496043 RHOBTB1O94844 696 aa13.42□□□□□ -0.26
PTPRF-214ENST00000496043 ATXN1P54253 815 aaKnown RBP13.42□□□□□ -0.26
PTPRF-214ENST00000496043 USP39Q53GS9 565 aaKnown RBP13.42□□□□□ -0.26
PTPRF-214ENST00000496043 C10orf120Q5SQS8 335 aa13.42□□□□□ -0.26
PTPRF-214ENST00000496043 CCDC186Q7Z3E2 898 aa13.42□□□□□ -0.26
PTPRF-214ENST00000496043 C12orf40Q86WS4 652 aa13.42□□□□□ -0.26
PTPRF-214ENST00000496043 ANKRD52Q8NB46 1076 aa13.42□□□□□ -0.26
PTPRF-214ENST00000496043 WBP2Q969T9 261 aa13.42□□□□□ -0.26
PTPRF-214ENST00000496043 ZC3H10Q96K80 434 aaKnown RBP13.42□□□□□ -0.26
PTPRF-214ENST00000496043 CEP63Q96MT8 703 aa13.42□□□□□ -0.26
PTPRF-214ENST00000496043 CDK5RAP1Q96SZ6 601 aaKnown RBP13.42□□□□□ -0.26
PTPRF-214ENST00000496043 ARRDC1-AS1Q9H2J1 176 aa13.42□□□□□ -0.26
PTPRF-214ENST00000496043 NMUR1Q9HB89 426 aa13.42□□□□□ -0.26
PTPRF-214ENST00000496043 MTPAPQ9NVV4 582 aaKnown RBP eCLIP13.42□□□□□ -0.26
PTPRF-214ENST00000496043 CLIC5Q9NZA1 410 aa13.42□□□□□ -0.26
PTPRF-214ENST00000496043 WDR35Q9P2L0 1181 aa13.42□□□□□ -0.26
PTPRF-214ENST00000496043 DEC1Q9P2X7 70 aa13.42□□□□□ -0.26
PTPRF-214ENST00000496043 NAGPAQ9UK23 515 aa13.42□□□□□ -0.26
PTPRF-214ENST00000496043 MAN1B1Q9UKM7 699 aa13.42□□□□□ -0.26
PTPRF-214ENST00000496043 CDV3Q9UKY7 258 aaKnown RBP13.42□□□□□ -0.26
PTPRF-214ENST00000496043 MMP17Q9ULZ9 603 aa13.42□□□□□ -0.26
PTPRF-214ENST00000496043 USP3Q9Y6I4 520 aa13.42□□□□□ -0.26
PTPRF-214ENST00000496043 ATG2BQ96BY7 2078 aa13.42□□□□□ -0.26
PTPRF-214ENST00000496043 ZNF292O60281 2723 aa13.41□□□□□ -0.26
PTPRF-214ENST00000496043 GREM1O60565 184 aa13.41□□□□□ -0.26
PTPRF-214ENST00000496043 ALDH1A2O94788 518 aa13.41□□□□□ -0.26
PTPRF-214ENST00000496043 KLF8O95600 359 aaPredicted RBP13.41□□□□□ -0.26
PTPRF-214ENST00000496043 TIE1P35590 1138 aa13.41□□□□□ -0.26
PTPRF-214ENST00000496043 COG7P83436 770 aa13.41□□□□□ -0.26
PTPRF-214ENST00000496043 CETN1Q12798 172 aa13.41□□□□□ -0.26
PTPRF-214ENST00000496043 CUL2Q13617 745 aa13.41□□□□□ -0.26
PTPRF-214ENST00000496043 CRY1Q16526 586 aa13.41□□□□□ -0.26
PTPRF-214ENST00000496043 CCDC40Q4G0X9 1142 aa13.41□□□□□ -0.26
PTPRF-214ENST00000496043 EOGTQ5NDL2 527 aa13.41□□□□□ -0.26
PTPRF-214ENST00000496043 EMC10Q5UCC4 262 aa13.41□□□□□ -0.26
PTPRF-214ENST00000496043 SCD5Q86SK9 330 aa13.41□□□□□ -0.26
PTPRF-214ENST00000496043 ARHGAP18Q8N392 663 aa13.41□□□□□ -0.26
PTPRF-214ENST00000496043 KCNV2Q8TDN2 545 aa13.41□□□□□ -0.26
PTPRF-214ENST00000496043 SLC35C1Q96A29 364 aa13.41□□□□□ -0.26
PTPRF-214ENST00000496043 XPO6Q96QU8 1125 aaKnown RBP13.41□□□□□ -0.26
PTPRF-214ENST00000496043 ARID3AQ99856 593 aa13.41□□□□□ -0.26
PTPRF-214ENST00000496043 RTKNQ9BST9 563 aa13.41□□□□□ -0.26
PTPRF-214ENST00000496043 NUDT5Q9UKK9 219 aa13.41□□□□□ -0.26
PTPRF-214ENST00000496043 KIAA1257Q9ULG3 409 aa13.41□□□□□ -0.26
PTPRF-214ENST00000496043 ZNF510Q9Y2H8 683 aa13.41□□□□□ -0.26
PTPRF-214ENST00000496043 DYNC1LI1Q9Y6G9 523 aaKnown RBP13.41□□□□□ -0.26
PTPRF-214ENST00000496043 BICDL2A1A5D9 508 aa13.4□□□□□ -0.26
PTPRF-214ENST00000496043 ANTXRLA6NF34 631 aa13.4□□□□□ -0.26
PTPRF-214ENST00000496043 PPP1R3GB7ZBB8 358 aa13.4□□□□□ -0.26
PTPRF-214ENST00000496043 PMM2O15305 246 aa13.4□□□□□ -0.26
PTPRF-214ENST00000496043 TULP3O75386 442 aa13.4□□□□□ -0.26
PTPRF-214ENST00000496043 EPN2O95208 641 aa13.4□□□□□ -0.26
PTPRF-214ENST00000496043 ZNF806P0C7X5 589 aa13.4□□□□□ -0.26
PTPRF-214ENST00000496043 CD44P16070 742 aaKnown RBP13.4□□□□□ -0.26
PTPRF-214ENST00000496043 TBXAS1P24557 533 aaPredicted RBP13.4□□□□□ -0.26
PTPRF-214ENST00000496043 KIR2DL1P43626 348 aaPredicted RBP13.4□□□□□ -0.26
PTPRF-214ENST00000496043 FMO5P49326 533 aa13.4□□□□□ -0.26
PTPRF-214ENST00000496043 KDSRQ06136 332 aa13.4□□□□□ -0.26
PTPRF-214ENST00000496043 MESP2Q0VG99 397 aa13.4□□□□□ -0.26
PTPRF-214ENST00000496043 LRMPQ12912 555 aa13.4□□□□□ -0.26
PTPRF-214ENST00000496043 ELF2Q15723 593 aa13.4□□□□□ -0.26
PTPRF-214ENST00000496043 PLK5Q496M5 336 aa13.4□□□□□ -0.26
PTPRF-214ENST00000496043 SGO2Q562F6 1265 aa13.4□□□□□ -0.26
PTPRF-214ENST00000496043 KLHL10Q6JEL2 608 aa13.4□□□□□ -0.26
PTPRF-214ENST00000496043 PRR23CQ6ZRP0 262 aa13.4□□□□□ -0.26
PTPRF-214ENST00000496043 PIGZQ86VD9 579 aa13.4□□□□□ -0.26
PTPRF-214ENST00000496043 C11orf74Q86VG3 221 aa13.4□□□□□ -0.26
PTPRF-214ENST00000496043 ETFBKMTQ8IXQ9 262 aa13.4□□□□□ -0.26
PTPRF-214ENST00000496043 ALLCQ8N6M5 410 aa13.4□□□□□ -0.26
PTPRF-214ENST00000496043 IL17RCQ8NAC3 791 aa13.4□□□□□ -0.26
PTPRF-214ENST00000496043 TXNDC5Q8NBS9 432 aaKnown RBP13.4□□□□□ -0.26
PTPRF-214ENST00000496043 NETO1Q8TDF5 533 aa13.4□□□□□ -0.26
PTPRF-214ENST00000496043 POLMQ9NP87 494 aaPredicted RBP13.4□□□□□ -0.26
PTPRF-214ENST00000496043 HESX1Q9UBX0 185 aa13.4□□□□□ -0.26
PTPRF-214ENST00000496043 PCDHGA5Q9Y5G8 931 aa13.4□□□□□ -0.26
PTPRF-214ENST00000496043 LOC105378220A0A1B0GUY1 285 aaPredicted RBP13.39□□□□□ -0.27
PTPRF-214ENST00000496043 DCLK1O15075 740 aa13.39□□□□□ -0.27
PTPRF-214ENST00000496043 MDM4O15151 490 aa13.39□□□□□ -0.27
PTPRF-214ENST00000496043 GADD45BO75293 160 aaPredicted RBP13.39□□□□□ -0.27
PTPRF-214ENST00000496043 VDRP11473 427 aa13.39□□□□□ -0.27
PTPRF-214ENST00000496043 CD19P15391 556 aa13.39□□□□□ -0.27
PTPRF-214ENST00000496043 TKTL1P51854 596 aa13.39□□□□□ -0.27
PTPRF-214ENST00000496043 MORC3Q14149 939 aa13.39□□□□□ -0.27
PTPRF-214ENST00000496043 RAB41Q5JT25 222 aa13.39□□□□□ -0.27
PTPRF-214ENST00000496043 GRAMD4Q6IC98 578 aa13.39□□□□□ -0.27
PTPRF-214ENST00000496043 ANO7Q6IWH7 933 aa13.39□□□□□ -0.27
PTPRF-214ENST00000496043 FOXR2Q6PJQ5 311 aa13.39□□□□□ -0.27
PTPRF-214ENST00000496043 TMEM92Q6UXU6 159 aa13.39□□□□□ -0.27
PTPRF-214ENST00000496043 TPGS1Q6ZTW0 290 aa13.39□□□□□ -0.27
PTPRF-214ENST00000496043 TRMT11Q7Z4G4 463 aaKnown RBP13.39□□□□□ -0.27
PTPRF-214ENST00000496043 RASSF3Q86WH2 238 aa13.39□□□□□ -0.27
Retrieved 100 of 20,778 RNA–protein pairs in 42.9 ms