RNA–Protein interactions for RNA: ENST00000495090.6

SYNE1-230, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 1 (best) BASIC

Gene SYNE1, Length 1,907 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-230ENST00000495090 KIFC3Q9BVG8 833 aa10.04□□□□□ -0.8
SYNE1-230ENST00000495090 C20orf27Q9GZN8 174 aa10.04□□□□□ -0.8
SYNE1-230ENST00000495090 TBCCD1Q9NVR7 557 aa10.04□□□□□ -0.8
SYNE1-230ENST00000495090 TMX2Q9Y320 296 aa10.04□□□□□ -0.8
SYNE1-230ENST00000495090 MYH9P35579 1960 aaKnown RBP10.04□□□□□ -0.8
SYNE1-230ENST00000495090 WDR64B1ANS9 1081 aa10.03□□□□□ -0.8
SYNE1-230ENST00000495090 DNAJA2O60884 412 aa10.03□□□□□ -0.8
SYNE1-230ENST00000495090 SIN3BO75182 1162 aa10.03□□□□□ -0.8
SYNE1-230ENST00000495090 LGR5O75473 907 aa10.03□□□□□ -0.8
SYNE1-230ENST00000495090 PGM3O95394 542 aa10.03□□□□□ -0.8
SYNE1-230ENST00000495090 CAPNS1P04632 268 aa10.03□□□□□ -0.8
SYNE1-230ENST00000495090 CDK4P11802 303 aa10.03□□□□□ -0.8
SYNE1-230ENST00000495090 TNNI1P19237 187 aa10.03□□□□□ -0.8
SYNE1-230ENST00000495090 SERPINB6P35237 376 aa10.03□□□□□ -0.8
SYNE1-230ENST00000495090 ALDH1A3P47895 512 aa10.03□□□□□ -0.8
SYNE1-230ENST00000495090 SERPINB8P50452 374 aa10.03□□□□□ -0.8
SYNE1-230ENST00000495090 YWHAZP63104 245 aaKnown RBP10.03□□□□□ -0.8
SYNE1-230ENST00000495090 DEUP1Q05D60 604 aa10.03□□□□□ -0.8
SYNE1-230ENST00000495090 UGCGQ16739 394 aa10.03□□□□□ -0.8
SYNE1-230ENST00000495090 NADK2Q4G0N4 442 aa10.03□□□□□ -0.8
SYNE1-230ENST00000495090 SPOPLQ6IQ16 392 aa10.03□□□□□ -0.8
SYNE1-230ENST00000495090 ZFP1Q6P2D0 407 aa10.03□□□□□ -0.8
SYNE1-230ENST00000495090 PPM1NQ8N819 430 aa10.03□□□□□ -0.8
SYNE1-230ENST00000495090 FAM71DQ8N9W8 422 aa10.03□□□□□ -0.8
SYNE1-230ENST00000495090 ACMSDQ8TDX5 336 aa10.03□□□□□ -0.8
SYNE1-230ENST00000495090 BSNDQ8WZ55 320 aa10.03□□□□□ -0.8
SYNE1-230ENST00000495090 RTP4Q96DX8 246 aa10.03□□□□□ -0.8
SYNE1-230ENST00000495090 DCUN1D1Q96GG9 259 aa10.03□□□□□ -0.8
SYNE1-230ENST00000495090 ZC3H12CQ9C0D7 883 aaKnown RBP10.03□□□□□ -0.8
SYNE1-230ENST00000495090 SMYD3Q9H7B4 428 aa10.03□□□□□ -0.8
SYNE1-230ENST00000495090 POPDC2Q9HBU9 364 aa10.03□□□□□ -0.8
SYNE1-230ENST00000495090 SLC9A2Q9UBY0 812 aa10.03□□□□□ -0.8
SYNE1-230ENST00000495090 MARCOQ9UEW3 520 aaPredicted RBP10.03□□□□□ -0.8
SYNE1-230ENST00000495090 CCNL1Q9UK58 526 aaPredicted RBP10.03□□□□□ -0.8
SYNE1-230ENST00000495090 PCDHGC3Q9UN70 934 aa10.03□□□□□ -0.8
SYNE1-230ENST00000495090 G3BP2Q9UN86 482 aaKnown RBP10.03□□□□□ -0.8
SYNE1-230ENST00000495090 LZTS1Q9Y250 596 aa10.03□□□□□ -0.8
SYNE1-230ENST00000495090 INPP5FQ9Y2H2 1132 aa10.03□□□□□ -0.8
SYNE1-230ENST00000495090 PCDHGA4Q9Y5G9 962 aa10.03□□□□□ -0.8
SYNE1-230ENST00000495090 BTAF1O14981 1849 aa10.03□□□□□ -0.8
SYNE1-230ENST00000495090 TXNDC9O14530 226 aa10.03□□□□□ -0.8
SYNE1-230ENST00000495090 PPEF1O14829 653 aaPredicted RBP10.03□□□□□ -0.8
SYNE1-230ENST00000495090 RIMBP2O15034 1052 aa10.03□□□□□ -0.8
SYNE1-230ENST00000495090 ENTPD3O75355 529 aa10.03□□□□□ -0.8
SYNE1-230ENST00000495090 LRCH4O75427 683 aa10.03□□□□□ -0.8
SYNE1-230ENST00000495090 STAM2O75886 525 aa10.03□□□□□ -0.8
SYNE1-230ENST00000495090 APOEP02649 317 aa10.03□□□□□ -0.8
SYNE1-230ENST00000495090 PROCP04070 461 aa10.03□□□□□ -0.8
SYNE1-230ENST00000495090 KITP10721 976 aa10.03□□□□□ -0.8
SYNE1-230ENST00000495090 RBP3P10745 1247 aa10.03□□□□□ -0.8
SYNE1-230ENST00000495090 ITGAXP20702 1163 aa10.03□□□□□ -0.8
SYNE1-230ENST00000495090 TPP2P29144 1249 aaPredicted RBP10.03□□□□□ -0.8
SYNE1-230ENST00000495090 PMLP29590 882 aa10.03□□□□□ -0.8
SYNE1-230ENST00000495090 GABRB2P47870 512 aa10.03□□□□□ -0.8
SYNE1-230ENST00000495090 EMP3P54852 163 aa10.03□□□□□ -0.8
SYNE1-230ENST00000495090 NR1H2P55055 460 aa10.03□□□□□ -0.8
SYNE1-230ENST00000495090 ADARP55265 1226 aaKnown RBP10.03□□□□□ -0.8
SYNE1-230ENST00000495090 DYNLT1P63172 113 aa10.03□□□□□ -0.8
SYNE1-230ENST00000495090 KRT76Q01546 638 aa10.03□□□□□ -0.8
SYNE1-230ENST00000495090 ROR1Q01973 937 aa10.03□□□□□ -0.8
SYNE1-230ENST00000495090 MTMR1Q13613 665 aa10.03□□□□□ -0.8
SYNE1-230ENST00000495090 KRT81Q14533 505 aa10.03□□□□□ -0.8
SYNE1-230ENST00000495090 ACAP1Q15027 740 aa10.03□□□□□ -0.8
SYNE1-230ENST00000495090 NOMO1Q15155 1222 aa10.03□□□□□ -0.8
SYNE1-230ENST00000495090 GRAMD1BQ3KR37 738 aa10.03□□□□□ -0.8
SYNE1-230ENST00000495090 RALGPS1Q5JS13 557 aa10.03□□□□□ -0.8
SYNE1-230ENST00000495090 RARS2Q5T160 578 aaKnown RBP10.03□□□□□ -0.8
SYNE1-230ENST00000495090 MBLAC2Q68D91 279 aa10.03□□□□□ -0.8
SYNE1-230ENST00000495090 CYS1Q717R9 158 aa10.03□□□□□ -0.8
SYNE1-230ENST00000495090 LDHDQ86WU2 507 aa10.03□□□□□ -0.8
SYNE1-230ENST00000495090 TICAM1Q8IUC6 712 aa10.03□□□□□ -0.8
SYNE1-230ENST00000495090 CTAGE3PQ8IX95 158 aa10.03□□□□□ -0.8
SYNE1-230ENST00000495090 METTL25Q8N6Q8 603 aa10.03□□□□□ -0.8
SYNE1-230ENST00000495090 MCPH1Q8NEM0 835 aa10.03□□□□□ -0.8
SYNE1-230ENST00000495090 ADCY4Q8NFM4 1077 aa10.03□□□□□ -0.8
SYNE1-230ENST00000495090 CMASQ8NFW8 434 aaPredicted RBP10.03□□□□□ -0.8
SYNE1-230ENST00000495090 ACSF2Q96CM8 615 aaPredicted RBP10.03□□□□□ -0.8
SYNE1-230ENST00000495090 CGRRF1Q99675 332 aa10.03□□□□□ -0.8
SYNE1-230ENST00000495090 SENP6Q9GZR1 1112 aaPredicted RBP10.03□□□□□ -0.8
SYNE1-230ENST00000495090 PAK5Q9P286 719 aa10.03□□□□□ -0.8
SYNE1-230ENST00000495090 SAE1Q9UBE0 346 aaPredicted RBP10.03□□□□□ -0.8
SYNE1-230ENST00000495090 BLOC1S6Q9UL45 172 aa10.03□□□□□ -0.8
SYNE1-230ENST00000495090 PRPF19Q9UMS4 504 aaKnown RBP10.03□□□□□ -0.8
SYNE1-230ENST00000495090 NRXN2Q9P2S2 1712 aa10.03□□□□□ -0.8
SYNE1-230ENST00000495090 CCDC195A0A1B0GUA6 201 aa10.02□□□□□ -0.81
SYNE1-230ENST00000495090 FAM159BA6NKW6 160 aa10.02□□□□□ -0.81
SYNE1-230ENST00000495090 CYB561D2O14569 222 aa10.02□□□□□ -0.81
SYNE1-230ENST00000495090 PIGRP01833 764 aa10.02□□□□□ -0.81
SYNE1-230ENST00000495090 SERPINB2P05120 415 aa10.02□□□□□ -0.81
SYNE1-230ENST00000495090 CCDC130P13994 396 aa10.02□□□□□ -0.81
SYNE1-230ENST00000495090 GRK2P25098 689 aa10.02□□□□□ -0.81
SYNE1-230ENST00000495090 PSMA2P25787 234 aa10.02□□□□□ -0.81
SYNE1-230ENST00000495090 POLR2BP30876 1174 aaKnown RBP10.02□□□□□ -0.81
SYNE1-230ENST00000495090 ERFP50548 548 aa10.02□□□□□ -0.81
SYNE1-230ENST00000495090 HIRAP54198 1017 aaPredicted RBP10.02□□□□□ -0.81
SYNE1-230ENST00000495090 EPHB1P54762 984 aa10.02□□□□□ -0.81
SYNE1-230ENST00000495090 JAG1P78504 1218 aa10.02□□□□□ -0.81
SYNE1-230ENST00000495090 VPS72Q15906 364 aa10.02□□□□□ -0.81
SYNE1-230ENST00000495090 CNGA3Q16281 694 aa10.02□□□□□ -0.81
SYNE1-230ENST00000495090 TBC1D10BQ4KMP7 808 aaPredicted RBP10.02□□□□□ -0.81
Retrieved 100 of 20,778 RNA–protein pairs in 34.5 ms