RNA–Protein interactions for RNA: ENST00000495039.1

VPS50-219, Transcript of VPS50, EARP/GARPII complex subunit, humanhuman

TSL 1 (best)

Gene VPS50, Length 1,115 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS50-219ENST00000495039 FYB1O15117 783 aa4.77□□□□□ -1.65
VPS50-219ENST00000495039 CD3EAPO15446 510 aaKnown RBP4.77□□□□□ -1.65
VPS50-219ENST00000495039 RGS10O43665 173 aa4.77□□□□□ -1.65
VPS50-219ENST00000495039 TBC1D4O60343 1298 aa4.77□□□□□ -1.65
VPS50-219ENST00000495039 USP12O75317 370 aa4.77□□□□□ -1.65
VPS50-219ENST00000495039 RASAL1O95294 804 aa4.77□□□□□ -1.65
VPS50-219ENST00000495039 NPR1P16066 1061 aa4.77□□□□□ -1.65
VPS50-219ENST00000495039 EARS2Q5JPH6 523 aaKnown RBP4.77□□□□□ -1.65
VPS50-219ENST00000495039 ATAT1Q5SQI0 421 aa4.77□□□□□ -1.65
VPS50-219ENST00000495039 PDXDC1Q6P996 788 aa4.77□□□□□ -1.65
VPS50-219ENST00000495039 RFX8Q6ZV50 586 aa4.77□□□□□ -1.65
VPS50-219ENST00000495039 ASB5Q8WWX0 329 aa4.77□□□□□ -1.65
VPS50-219ENST00000495039 KAZALD1Q96I82 304 aa4.77□□□□□ -1.65
VPS50-219ENST00000495039 PPP1R9BQ96SB3 815 aa4.77□□□□□ -1.65
VPS50-219ENST00000495039 DNMT3BQ9UBC3 853 aaKnown RBP4.77□□□□□ -1.65
VPS50-219ENST00000495039 PAXBP1Q9Y5B6 917 aa4.77□□□□□ -1.65
VPS50-219ENST00000495039 FER1L4A9Z1Z3 1794 aa4.77□□□□□ -1.65
VPS50-219ENST00000495039 A0A1W2PPL8 197 aa4.76□□□□□ -1.65
VPS50-219ENST00000495039 A8MVJ9 347 aa4.76□□□□□ -1.65
VPS50-219ENST00000495039 TMEM233B4DJY2 109 aa4.76□□□□□ -1.65
VPS50-219ENST00000495039 PLAUP00749 431 aa4.76□□□□□ -1.65
VPS50-219ENST00000495039 CD19P15391 556 aa4.76□□□□□ -1.65
VPS50-219ENST00000495039 MCM5P33992 734 aa4.76□□□□□ -1.65
VPS50-219ENST00000495039 EVA1CP58658 441 aa4.76□□□□□ -1.65
VPS50-219ENST00000495039 KPNB1Q14974 876 aaKnown RBP4.76□□□□□ -1.65
VPS50-219ENST00000495039 ZNF324BQ6AW86 544 aaPredicted RBP4.76□□□□□ -1.65
VPS50-219ENST00000495039 CAPRIN2Q6IMN6 1127 aaKnown RBP4.76□□□□□ -1.65
VPS50-219ENST00000495039 GSG1LQ6UXU4 331 aa4.76□□□□□ -1.65
VPS50-219ENST00000495039 FAM57BQ71RH2 274 aa4.76□□□□□ -1.65
VPS50-219ENST00000495039 PNPLA1Q8N8W4 532 aa4.76□□□□□ -1.65
VPS50-219ENST00000495039 BCAS4Q8TDM0 211 aa4.76□□□□□ -1.65
VPS50-219ENST00000495039 TRMT61AQ96FX7 289 aaKnown RBP4.76□□□□□ -1.65
VPS50-219ENST00000495039 NUAK2Q9H093 628 aa4.76□□□□□ -1.65
VPS50-219ENST00000495039 ARL8BQ9NVJ2 186 aa4.76□□□□□ -1.65
VPS50-219ENST00000495039 CAMSAP3Q9P1Y5 1249 aaPredicted RBP4.76□□□□□ -1.65
VPS50-219ENST00000495039 NKX1-2Q9UD57 310 aaPredicted RBP4.76□□□□□ -1.65
VPS50-219ENST00000495039 FZD4Q9ULV1 537 aa4.76□□□□□ -1.65
VPS50-219ENST00000495039 NDUFB8O95169 186 aa4.75□□□□□ -1.65
VPS50-219ENST00000495039 EPN2O95208 641 aa4.75□□□□□ -1.65
VPS50-219ENST00000495039 KRT10P13645 584 aa4.75□□□□□ -1.65
VPS50-219ENST00000495039 PLA2G2AP14555 144 aa4.75□□□□□ -1.65
VPS50-219ENST00000495039 NCLP19338 710 aaKnown RBP4.75□□□□□ -1.65
VPS50-219ENST00000495039 IBSPP21815 317 aaPredicted RBP4.75□□□□□ -1.65
VPS50-219ENST00000495039 TBXAS1P24557 533 aaPredicted RBP4.75□□□□□ -1.65
VPS50-219ENST00000495039 TNFRSF8P28908 595 aa4.75□□□□□ -1.65
VPS50-219ENST00000495039 FHL3Q13643 280 aa4.75□□□□□ -1.65
VPS50-219ENST00000495039 INPP5JQ15735 1006 aaPredicted RBP4.75□□□□□ -1.65
VPS50-219ENST00000495039 DGKKQ5KSL6 1271 aa4.75□□□□□ -1.65
VPS50-219ENST00000495039 RFX6Q8HWS3 928 aa4.75□□□□□ -1.65
VPS50-219ENST00000495039 ZCRB1Q8TBF4 217 aaKnown RBP4.75□□□□□ -1.65
VPS50-219ENST00000495039 ZBTB45Q96K62 511 aaPredicted RBP4.75□□□□□ -1.65
VPS50-219ENST00000495039 TUBB6Q9BUF5 446 aa4.75□□□□□ -1.65
VPS50-219ENST00000495039 TM2D2Q9BX73 214 aa4.75□□□□□ -1.65
VPS50-219ENST00000495039 ZNF518BQ9C0D4 1074 aa4.75□□□□□ -1.65
VPS50-219ENST00000495039 USP29Q9HBJ7 922 aa4.75□□□□□ -1.65
VPS50-219ENST00000495039 LOC102723971A0A1B0GUV8 181 aa4.74□□□□□ -1.65
VPS50-219ENST00000495039 CCP110O43303 1012 aa4.74□□□□□ -1.65
VPS50-219ENST00000495039 AKAP10O43572 662 aa4.74□□□□□ -1.65
VPS50-219ENST00000495039 TLX3O43711 291 aaPredicted RBP4.74□□□□□ -1.65
VPS50-219ENST00000495039 AP1G1O43747 822 aa4.74□□□□□ -1.65
VPS50-219ENST00000495039 ZC3H11AO75152 810 aaKnown RBP eCLIP4.74□□□□□ -1.65
VPS50-219ENST00000495039 OFD1O75665 1012 aa4.74□□□□□ -1.65
VPS50-219ENST00000495039 ADRA1DP25100 572 aa4.74□□□□□ -1.65
VPS50-219ENST00000495039 PGDP52209 483 aa4.74□□□□□ -1.65
VPS50-219ENST00000495039 SLC12A2P55011 1212 aa4.74□□□□□ -1.65
VPS50-219ENST00000495039 GPC5P78333 572 aa4.74□□□□□ -1.65
VPS50-219ENST00000495039 TXNL4AP83876 142 aaKnown RBP4.74□□□□□ -1.65
VPS50-219ENST00000495039 AMPD3Q01432 767 aa4.74□□□□□ -1.65
VPS50-219ENST00000495039 DEUP1Q05D60 604 aa4.74□□□□□ -1.65
VPS50-219ENST00000495039 PTPROQ16827 1216 aa4.74□□□□□ -1.65
VPS50-219ENST00000495039 ST3GAL2Q16842 350 aa4.74□□□□□ -1.65
VPS50-219ENST00000495039 C9orf50Q5SZB4 431 aa4.74□□□□□ -1.65
VPS50-219ENST00000495039 DAAM2Q86T65 1068 aa4.74□□□□□ -1.65
VPS50-219ENST00000495039 ZBTB46Q86UZ6 589 aa4.74□□□□□ -1.65
VPS50-219ENST00000495039 COL23A1Q86Y22 540 aaPredicted RBP4.74□□□□□ -1.65
VPS50-219ENST00000495039 CHPFQ8IZ52 775 aa4.74□□□□□ -1.65
VPS50-219ENST00000495039 FBXL14Q8N1E6 418 aa4.74□□□□□ -1.65
VPS50-219ENST00000495039 JPH3Q8WXH2 748 aaPredicted RBP4.74□□□□□ -1.65
VPS50-219ENST00000495039 NR4A3Q92570 626 aa4.74□□□□□ -1.65
VPS50-219ENST00000495039 ATP2A3Q93084 1043 aa4.74□□□□□ -1.65
VPS50-219ENST00000495039 SPSB4Q96A44 273 aa4.74□□□□□ -1.65
VPS50-219ENST00000495039 VPS50Q96JG6 964 aa4.74□□□□□ -1.65
VPS50-219ENST00000495039 FCRL5Q96RD9 977 aa4.74□□□□□ -1.65
VPS50-219ENST00000495039 ARHGAP39Q9C0H5 1083 aa4.74□□□□□ -1.65
VPS50-219ENST00000495039 SMURF2Q9HAU4 748 aa4.74□□□□□ -1.65
VPS50-219ENST00000495039 TCF7L1Q9HCS4 588 aa4.74□□□□□ -1.65
VPS50-219ENST00000495039 A1CFQ9NQ94 594 aaKnown RBP4.74□□□□□ -1.65
VPS50-219ENST00000495039 ASAP1Q9ULH1 1129 aa4.74□□□□□ -1.65
VPS50-219ENST00000495039 COG5Q9UP83 839 aa4.74□□□□□ -1.65
VPS50-219ENST00000495039 TMEM272A0A1B0GTI8 110 aa4.73□□□□□ -1.65
VPS50-219ENST00000495039 ZNF814B7Z6K7 855 aa4.73□□□□□ -1.65
VPS50-219ENST00000495039 F8W810 466 aa4.73□□□□□ -1.65
VPS50-219ENST00000495039 RRHO14718 337 aa4.73□□□□□ -1.65
VPS50-219ENST00000495039 SPTLC2O15270 562 aa4.73□□□□□ -1.65
VPS50-219ENST00000495039 HGFP14210 728 aa4.73□□□□□ -1.65
VPS50-219ENST00000495039 HTR1BP28222 390 aa4.73□□□□□ -1.65
VPS50-219ENST00000495039 GATMP50440 423 aa4.73□□□□□ -1.65
VPS50-219ENST00000495039 PPATQ06203 517 aa4.73□□□□□ -1.65
VPS50-219ENST00000495039 ZDHHC24Q6UX98 284 aa4.73□□□□□ -1.65
VPS50-219ENST00000495039 DENND1CQ8IV53 801 aa4.73□□□□□ -1.65
Retrieved 100 of 20,778 RNA–protein pairs in 29 ms