RNA–Protein interactions for RNA: ENST00000494623.1

CHMP3-209, Transcript of charged multivesicular body protein 3, humanhuman

TSL 2

Gene CHMP3, Length 2,724 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP3-209ENST00000494623 SERAC1Q96JX3 654 aa11.66□□□□□ -0.54
CHMP3-209ENST00000494623 SNX27Q96L92 541 aa11.66□□□□□ -0.54
CHMP3-209ENST00000494623 LRRC37BQ96QE4 947 aa11.66□□□□□ -0.54
CHMP3-209ENST00000494623 DHX35Q9H5Z1 703 aaKnown RBP11.66□□□□□ -0.54
CHMP3-209ENST00000494623 CCL15-CCL14A0A0B4J2E2 113 aa11.65□□□□□ -0.54
CHMP3-209ENST00000494623 IQANK1A0A1B0GTG1 560 aa11.65□□□□□ -0.54
CHMP3-209ENST00000494623 DPYSL4O14531 572 aa11.65□□□□□ -0.54
CHMP3-209ENST00000494623 CHADO15335 359 aa11.65□□□□□ -0.54
CHMP3-209ENST00000494623 LPXNO60711 386 aa11.65□□□□□ -0.54
CHMP3-209ENST00000494623 DESP17661 470 aa11.65□□□□□ -0.54
CHMP3-209ENST00000494623 LMO2P25791 158 aa11.65□□□□□ -0.54
CHMP3-209ENST00000494623 CCL15Q16663 113 aa11.65□□□□□ -0.54
CHMP3-209ENST00000494623 GPR142Q7Z601 462 aa11.65□□□□□ -0.54
CHMP3-209ENST00000494623 NXF3Q9H4D5 531 aaKnown RBP11.65□□□□□ -0.54
CHMP3-209ENST00000494623 ETNK1Q9HBU6 452 aa11.65□□□□□ -0.54
CHMP3-209ENST00000494623 SSU72Q9NP77 194 aaKnown RBP11.65□□□□□ -0.54
CHMP3-209ENST00000494623 NPHS2Q9NP85 383 aa11.65□□□□□ -0.54
CHMP3-209ENST00000494623 ARHGEF3Q9NR81 526 aa11.65□□□□□ -0.54
CHMP3-209ENST00000494623 CHKBQ9Y259 395 aa11.65□□□□□ -0.54
CHMP3-209ENST00000494623 PYGBP11216 843 aa11.65□□□□□ -0.55
CHMP3-209ENST00000494623 NEFHP12036 1026 aa11.65□□□□□ -0.55
CHMP3-209ENST00000494623 TSHRP16473 764 aa11.65□□□□□ -0.55
CHMP3-209ENST00000494623 TGM2P21980 687 aa11.65□□□□□ -0.55
CHMP3-209ENST00000494623 CYP2F1P24903 491 aa11.65□□□□□ -0.55
CHMP3-209ENST00000494623 ALDH3A1P30838 453 aa11.65□□□□□ -0.55
CHMP3-209ENST00000494623 OVGP1Q12889 678 aa11.65□□□□□ -0.55
CHMP3-209ENST00000494623 ZBTB6Q15916 424 aa11.65□□□□□ -0.55
CHMP3-209ENST00000494623 PRAMEF19Q5SWL8 479 aa11.65□□□□□ -0.55
CHMP3-209ENST00000494623 C9orf57Q5W0N0 161 aa11.65□□□□□ -0.55
CHMP3-209ENST00000494623 PPM1NQ8N819 430 aa11.65□□□□□ -0.55
CHMP3-209ENST00000494623 GTF3C2Q8WUA4 911 aaPredicted RBP11.65□□□□□ -0.55
CHMP3-209ENST00000494623 TEKT4Q8WW24 435 aa11.65□□□□□ -0.55
CHMP3-209ENST00000494623 MAML3Q96JK9 1138 aa11.65□□□□□ -0.55
CHMP3-209ENST00000494623 ETNK2Q9NVF9 386 aa11.65□□□□□ -0.55
CHMP3-209ENST00000494623 GJD2Q9UKL4 321 aa11.65□□□□□ -0.55
CHMP3-209ENST00000494623 CLEC11AQ9Y240 323 aa11.65□□□□□ -0.55
CHMP3-209ENST00000494623 EPB41L3Q9Y2J2 1087 aaPredicted RBP11.65□□□□□ -0.55
CHMP3-209ENST00000494623 SCN1AP35498 2009 aa11.65□□□□□ -0.55
CHMP3-209ENST00000494623 A6NJR5 290 aa11.64□□□□□ -0.55
CHMP3-209ENST00000494623 A8MUI8 341 aa11.64□□□□□ -0.55
CHMP3-209ENST00000494623 ADCY6O43306 1168 aa11.64□□□□□ -0.55
CHMP3-209ENST00000494623 GPR32O75388 356 aa11.64□□□□□ -0.55
CHMP3-209ENST00000494623 RECQL4O94761 1208 aa11.64□□□□□ -0.55
CHMP3-209ENST00000494623 SETSIPP0DME0 302 aa11.64□□□□□ -0.55
CHMP3-209ENST00000494623 YBX3P16989 372 aaKnown RBP eCLIP11.64□□□□□ -0.55
CHMP3-209ENST00000494623 GNL1P36915 607 aaPredicted RBP11.64□□□□□ -0.55
CHMP3-209ENST00000494623 SNX16P57768 344 aa11.64□□□□□ -0.55
CHMP3-209ENST00000494623 YWHAZP63104 245 aaKnown RBP11.64□□□□□ -0.55
CHMP3-209ENST00000494623 GBE1Q04446 702 aa11.64□□□□□ -0.55
CHMP3-209ENST00000494623 CCDC15Q0P6D6 951 aa11.64□□□□□ -0.55
CHMP3-209ENST00000494623 ZNF618Q5T7W0 954 aa11.64□□□□□ -0.55
CHMP3-209ENST00000494623 SLC9A4Q6AI14 798 aa11.64□□□□□ -0.55
CHMP3-209ENST00000494623 ASRGL1Q7L266 308 aa11.64□□□□□ -0.55
CHMP3-209ENST00000494623 SLC44A1Q8WWI5 657 aa11.64□□□□□ -0.55
CHMP3-209ENST00000494623 ALKBH8Q96BT7 664 aaKnown RBP11.64□□□□□ -0.55
CHMP3-209ENST00000494623 TINF2Q9BSI4 451 aa11.64□□□□□ -0.55
CHMP3-209ENST00000494623 KLC2Q9H0B6 622 aa11.64□□□□□ -0.55
CHMP3-209ENST00000494623 FAM124BQ9H5Z6 455 aaPredicted RBP11.64□□□□□ -0.55
CHMP3-209ENST00000494623 NRDE2Q9H7Z3 1164 aa11.64□□□□□ -0.55
CHMP3-209ENST00000494623 ZC3H7BQ9UGR2 993 aaKnown RBP11.64□□□□□ -0.55
CHMP3-209ENST00000494623 DCTN4Q9UJW0 460 aa11.64□□□□□ -0.55
CHMP3-209ENST00000494623 DERAQ9Y315 318 aa11.64□□□□□ -0.55
CHMP3-209ENST00000494623 CITO14578 2027 aa11.64□□□□□ -0.55
CHMP3-209ENST00000494623 BCLAF3A2AJT9 711 aaKnown RBP11.64□□□□□ -0.55
CHMP3-209ENST00000494623 TM9SF1O15321 606 aa11.64□□□□□ -0.55
CHMP3-209ENST00000494623 UNC5CO95185 931 aa11.64□□□□□ -0.55
CHMP3-209ENST00000494623 TARSP26639 723 aaKnown RBP11.64□□□□□ -0.55
CHMP3-209ENST00000494623 L1CAMP32004 1257 aa11.64□□□□□ -0.55
CHMP3-209ENST00000494623 SLC10A2Q12908 348 aaPredicted RBP11.64□□□□□ -0.55
CHMP3-209ENST00000494623 NOTUMQ6P988 496 aa11.64□□□□□ -0.55
CHMP3-209ENST00000494623 APBB1IPQ7Z5R6 666 aaPredicted RBP11.64□□□□□ -0.55
CHMP3-209ENST00000494623 CAND1Q86VP6 1230 aaKnown RBP11.64□□□□□ -0.55
CHMP3-209ENST00000494623 NDRG1Q92597 394 aaKnown RBP11.64□□□□□ -0.55
CHMP3-209ENST00000494623 TTC17Q96AE7 1141 aa11.64□□□□□ -0.55
CHMP3-209ENST00000494623 MS4A4AQ96JQ5 239 aa11.64□□□□□ -0.55
CHMP3-209ENST00000494623 TBCBQ99426 244 aa11.64□□□□□ -0.55
CHMP3-209ENST00000494623 MANSC1Q9H8J5 431 aa11.64□□□□□ -0.55
CHMP3-209ENST00000494623 HAO1Q9UJM8 370 aa11.64□□□□□ -0.55
CHMP3-209ENST00000494623 NR2E3Q9Y5X4 410 aa11.64□□□□□ -0.55
CHMP3-209ENST00000494623 TRIP11Q15643 1979 aa11.64□□□□□ -0.55
CHMP3-209ENST00000494623 CFAP69A5D8W1 941 aa11.63□□□□□ -0.55
CHMP3-209ENST00000494623 RRN3P2A6NIE6 340 aa11.63□□□□□ -0.55
CHMP3-209ENST00000494623 SPTLC1O15269 473 aa11.63□□□□□ -0.55
CHMP3-209ENST00000494623 METTL18O95568 372 aa11.63□□□□□ -0.55
CHMP3-209ENST00000494623 CYP2C9P11712 490 aa11.63□□□□□ -0.55
CHMP3-209ENST00000494623 ZNF467Q7Z7K2 595 aaPredicted RBP11.63□□□□□ -0.55
CHMP3-209ENST00000494623 UNC93AQ86WB7 457 aa11.63□□□□□ -0.55
CHMP3-209ENST00000494623 LRRC6Q86X45 466 aa11.63□□□□□ -0.55
CHMP3-209ENST00000494623 ZNF276Q8N554 614 aa11.63□□□□□ -0.55
CHMP3-209ENST00000494623 LRRC52Q8N7C0 313 aa11.63□□□□□ -0.55
CHMP3-209ENST00000494623 NPLOC4Q8TAT6 608 aa11.63□□□□□ -0.55
CHMP3-209ENST00000494623 C10orf82Q8WW14 230 aa11.63□□□□□ -0.55
CHMP3-209ENST00000494623 BRI3BPQ8WY22 251 aa11.63□□□□□ -0.55
CHMP3-209ENST00000494623 PTPRN2Q92932 1015 aa11.63□□□□□ -0.55
CHMP3-209ENST00000494623 FAM111AQ96PZ2 611 aa11.63□□□□□ -0.55
CHMP3-209ENST00000494623 TRIM56Q9BRZ2 755 aaKnown RBP11.63□□□□□ -0.55
CHMP3-209ENST00000494623 ZNF670Q9BS34 389 aa11.63□□□□□ -0.55
CHMP3-209ENST00000494623 RNF39Q9H2S5 420 aa11.63□□□□□ -0.55
CHMP3-209ENST00000494623 ABHD16BQ9H3Z7 469 aa11.63□□□□□ -0.55
CHMP3-209ENST00000494623 GOLGA2P5Q9HBQ8 144 aa11.63□□□□□ -0.55
Retrieved 100 of 20,778 RNA–protein pairs in 20.7 ms