RNA–Protein interactions for RNA: ENST00000494518.1

SKA1-205, Transcript of spindle and kinetochore associated complex subunit 1, humanhuman

TSL 2

Gene SKA1, Length 746 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SKA1-205ENST00000494518 GPRIN1Q7Z2K8 1008 aa13.38□□□□□ -0.27
SKA1-205ENST00000494518 MIB1Q86YT6 1006 aa13.38□□□□□ -0.27
SKA1-205ENST00000494518 CEP57L1Q8IYX8 460 aa13.38□□□□□ -0.27
SKA1-205ENST00000494518 ZNF513Q8N8E2 541 aaPredicted RBP13.38□□□□□ -0.27
SKA1-205ENST00000494518 DEFB124Q8NES8 71 aa13.38□□□□□ -0.27
SKA1-205ENST00000494518 OVCA2Q8WZ82 227 aa13.38□□□□□ -0.27
SKA1-205ENST00000494518 BHMTQ93088 406 aa13.38□□□□□ -0.27
SKA1-205ENST00000494518 TNIP3Q96KP6 325 aa13.38□□□□□ -0.27
SKA1-205ENST00000494518 BACH2Q9BYV9 841 aa13.38□□□□□ -0.27
SKA1-205ENST00000494518 VRTNQ9H8Y1 702 aa13.38□□□□□ -0.27
SKA1-205ENST00000494518 SPHK2Q9NRA0 654 aa13.38□□□□□ -0.27
SKA1-205ENST00000494518 TMEM74BQ9NUR3 256 aa13.38□□□□□ -0.27
SKA1-205ENST00000494518 EXOC1Q9NV70 894 aa13.38□□□□□ -0.27
SKA1-205ENST00000494518 DEC1Q9P2X7 70 aa13.38□□□□□ -0.27
SKA1-205ENST00000494518 PVALEFA0A1B0GWK0 134 aa13.37□□□□□ -0.27
SKA1-205ENST00000494518 C1QTNF9BB2RNN3 333 aa13.37□□□□□ -0.27
SKA1-205ENST00000494518 TLR5O60602 858 aa13.37□□□□□ -0.27
SKA1-205ENST00000494518 ZDHHC11BP0C7U3 371 aa13.37□□□□□ -0.27
SKA1-205ENST00000494518 C1QTNF9P0C862 333 aa13.37□□□□□ -0.27
SKA1-205ENST00000494518 ZSCAN22P10073 491 aaPredicted RBP13.37□□□□□ -0.27
SKA1-205ENST00000494518 ITPKAP23677 461 aa13.37□□□□□ -0.27
SKA1-205ENST00000494518 PIK3CAP42336 1068 aa13.37□□□□□ -0.27
SKA1-205ENST00000494518 TNFRSF4P43489 277 aa13.37□□□□□ -0.27
SKA1-205ENST00000494518 DNM1Q05193 864 aaKnown RBP13.37□□□□□ -0.27
SKA1-205ENST00000494518 KMT5BQ4FZB7 885 aa13.37□□□□□ -0.27
SKA1-205ENST00000494518 EGFLAMQ63HQ2 1017 aa13.37□□□□□ -0.27
SKA1-205ENST00000494518 CEP135Q66GS9 1140 aa13.37□□□□□ -0.27
SKA1-205ENST00000494518 KIAA1211LQ6NV74 962 aa13.37□□□□□ -0.27
SKA1-205ENST00000494518 TPGS1Q6ZTW0 290 aa13.37□□□□□ -0.27
SKA1-205ENST00000494518 ETFBKMTQ8IXQ9 262 aa13.37□□□□□ -0.27
SKA1-205ENST00000494518 KIAA1958Q8N8K9 716 aa13.37□□□□□ -0.27
SKA1-205ENST00000494518 TERB1Q8NA31 727 aa13.37□□□□□ -0.27
SKA1-205ENST00000494518 GOLGA5Q8TBA6 731 aa13.37□□□□□ -0.27
SKA1-205ENST00000494518 DNAJC17Q9NVM6 304 aaKnown RBP13.37□□□□□ -0.27
SKA1-205ENST00000494518 IL37Q9NZH6 218 aa13.37□□□□□ -0.27
SKA1-205ENST00000494518 CGNQ9P2M7 1197 aaKnown RBP13.37□□□□□ -0.27
SKA1-205ENST00000494518 NUDT5Q9UKK9 219 aa13.37□□□□□ -0.27
SKA1-205ENST00000494518 HCN2Q9UL51 889 aa13.37□□□□□ -0.27
SKA1-205ENST00000494518 KNL1Q8NG31 2342 aa13.36□□□□□ -0.27
SKA1-205ENST00000494518 NEDD8-MDP1E9PL57 170 aa13.36□□□□□ -0.27
SKA1-205ENST00000494518 CYP26A1O43174 497 aa13.36□□□□□ -0.27
SKA1-205ENST00000494518 HOXC11O43248 304 aaPredicted RBP13.36□□□□□ -0.27
SKA1-205ENST00000494518 ACTN4O43707 911 aaKnown RBP13.36□□□□□ -0.27
SKA1-205ENST00000494518 HLA-DRAP01903 254 aa13.36□□□□□ -0.27
SKA1-205ENST00000494518 NR3C1P04150 777 aa13.36□□□□□ -0.27
SKA1-205ENST00000494518 CFIP05156 583 aa13.36□□□□□ -0.27
SKA1-205ENST00000494518 HSP90AA1P07900 732 aaKnown RBP13.36□□□□□ -0.27
SKA1-205ENST00000494518 HOXB2P14652 356 aa13.36□□□□□ -0.27
SKA1-205ENST00000494518 GABRG2P18507 467 aa13.36□□□□□ -0.27
SKA1-205ENST00000494518 HSF5Q4G112 596 aaPredicted RBP13.36□□□□□ -0.27
SKA1-205ENST00000494518 SNX30Q5VWJ9 437 aa13.36□□□□□ -0.27
SKA1-205ENST00000494518 LYSMD4Q5XG99 296 aa13.36□□□□□ -0.27
SKA1-205ENST00000494518 GRAMD4Q6IC98 578 aa13.36□□□□□ -0.27
SKA1-205ENST00000494518 OTUB2Q96DC9 234 aa13.36□□□□□ -0.27
SKA1-205ENST00000494518 PAGE5Q96GU1 130 aa13.36□□□□□ -0.27
SKA1-205ENST00000494518 TWNKQ96RR1 684 aa13.36□□□□□ -0.27
SKA1-205ENST00000494518 ACOX2Q99424 681 aa13.36□□□□□ -0.27
SKA1-205ENST00000494518 MMRN2Q9H8L6 949 aa13.36□□□□□ -0.27
SKA1-205ENST00000494518 CD93Q9NPY3 652 aa13.36□□□□□ -0.27
SKA1-205ENST00000494518 DMAC2Q9NW81 257 aa13.36□□□□□ -0.27
SKA1-205ENST00000494518 OSER1Q9NX31 292 aa13.36□□□□□ -0.27
SKA1-205ENST00000494518 CALCOCO1Q9P1Z2 691 aa13.36□□□□□ -0.27
SKA1-205ENST00000494518 RAD54BQ9Y620 910 aa13.36□□□□□ -0.27
SKA1-205ENST00000494518 PCDH15Q96QU1 1955 aa13.36□□□□□ -0.27
SKA1-205ENST00000494518 PKD1L2Q7Z442 2459 aa13.35□□□□□ -0.27
SKA1-205ENST00000494518 A0A0A0MRY4 1105 aa13.35□□□□□ -0.27
SKA1-205ENST00000494518 A0A1B0GVL5 298 aa13.35□□□□□ -0.27
SKA1-205ENST00000494518 FAM92AA1XBS5 289 aa13.35□□□□□ -0.27
SKA1-205ENST00000494518 FAM200BP0CF97 657 aa13.35□□□□□ -0.27
SKA1-205ENST00000494518 TRIM49P0CI25 452 aa13.35□□□□□ -0.27
SKA1-205ENST00000494518 TRIM49CP0CI26 452 aa13.35□□□□□ -0.27
SKA1-205ENST00000494518 P4HA1P13674 534 aa13.35□□□□□ -0.27
SKA1-205ENST00000494518 ENGP17813 658 aa13.35□□□□□ -0.27
SKA1-205ENST00000494518 ASPAP45381 313 aa13.35□□□□□ -0.27
SKA1-205ENST00000494518 TUBP50607 506 aa13.35□□□□□ -0.27
SKA1-205ENST00000494518 AP3M2P53677 418 aa13.35□□□□□ -0.27
SKA1-205ENST00000494518 CLDN10P78369 228 aa13.35□□□□□ -0.27
SKA1-205ENST00000494518 RPL6Q02878 288 aaKnown RBP13.35□□□□□ -0.27
SKA1-205ENST00000494518 SGSM1Q2NKQ1 1148 aa13.35□□□□□ -0.27
SKA1-205ENST00000494518 ZACNQ401N2 412 aa13.35□□□□□ -0.27
SKA1-205ENST00000494518 C1orf220Q5T0J3 134 aa13.35□□□□□ -0.27
SKA1-205ENST00000494518 TOGARAM2Q6ZUX3 1019 aa13.35□□□□□ -0.27
SKA1-205ENST00000494518 SV2AQ7L0J3 742 aa13.35□□□□□ -0.27
SKA1-205ENST00000494518 SYT12Q8IV01 421 aa13.35□□□□□ -0.27
SKA1-205ENST00000494518 OR2I1PQ8NGU4 316 aa13.35□□□□□ -0.27
SKA1-205ENST00000494518 GTPBP2Q9BX10 602 aaKnown RBP13.35□□□□□ -0.27
SKA1-205ENST00000494518 BBS2Q9BXC9 721 aa13.35□□□□□ -0.27
SKA1-205ENST00000494518 KLF16Q9BXK1 252 aaPredicted RBP13.35□□□□□ -0.27
SKA1-205ENST00000494518 NUSAP1Q9BXS6 441 aaKnown RBP13.35□□□□□ -0.27
SKA1-205ENST00000494518 SLC6A17Q9H1V8 727 aa13.35□□□□□ -0.27
SKA1-205ENST00000494518 KCTD10Q9H3F6 313 aa13.35□□□□□ -0.27
SKA1-205ENST00000494518 NMUR1Q9HB89 426 aa13.35□□□□□ -0.27
SKA1-205ENST00000494518 TLR8Q9NR97 1041 aaKnown RBP13.35□□□□□ -0.27
SKA1-205ENST00000494518 NUMA1Q14980 2115 aa13.34□□□□□ -0.27
SKA1-205ENST00000494518 SPEGQ15772 3267 aa13.34□□□□□ -0.27
SKA1-205ENST00000494518 A0A1W2PQH9 124 aa13.34□□□□□ -0.27
SKA1-205ENST00000494518 PRRT4C9JH25 899 aa13.34□□□□□ -0.27
SKA1-205ENST00000494518 GREM1O60565 184 aa13.34□□□□□ -0.27
SKA1-205ENST00000494518 KIF20AO95235 890 aa13.34□□□□□ -0.27
SKA1-205ENST00000494518 ASS1P00966 412 aaKnown RBP13.34□□□□□ -0.27
Retrieved 100 of 20,778 RNA–protein pairs in 16.2 ms