RNA–Protein interactions for RNA: ENST00000493455.6

HPS4-216, Transcript of HPS4, biogenesis of lysosomal organelles complex 3 subunit 2, humanhuman

TSL 3

Gene HPS4, Length 986 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HPS4-216ENST00000493455 TRIM11Q96F44 468 aa16.51■□□□□ 0.23
HPS4-216ENST00000493455 PPP1R9BQ96SB3 815 aa16.51■□□□□ 0.23
HPS4-216ENST00000493455 ISCUQ9H1K1 167 aa16.51■□□□□ 0.23
HPS4-216ENST00000493455 WDR6Q9NNW5 1121 aaKnown RBP16.51■□□□□ 0.23
HPS4-216ENST00000493455 WDR35Q9P2L0 1181 aa16.51■□□□□ 0.23
HPS4-216ENST00000493455 RASAL2Q9UJF2 1139 aa16.51■□□□□ 0.23
HPS4-216ENST00000493455 TFR2Q9UP52 801 aa16.51■□□□□ 0.23
HPS4-216ENST00000493455 COG5Q9UP83 839 aa16.51■□□□□ 0.23
HPS4-216ENST00000493455 SYNJ2BP-COX16A0A087WUM0 186 aa16.5■□□□□ 0.23
HPS4-216ENST00000493455 FAM92AA1XBS5 289 aa16.5■□□□□ 0.23
HPS4-216ENST00000493455 ZNF840PA6NDX5 716 aa16.5■□□□□ 0.23
HPS4-216ENST00000493455 EIF3CLB5ME19 914 aaKnown RBP16.5■□□□□ 0.23
HPS4-216ENST00000493455 MOSPD3O75425 235 aa16.5■□□□□ 0.23
HPS4-216ENST00000493455 MBL2P11226 248 aaPredicted RBP16.5■□□□□ 0.23
HPS4-216ENST00000493455 NCAM1P13591 858 aa16.5■□□□□ 0.23
HPS4-216ENST00000493455 EPHA5P54756 1037 aa16.5■□□□□ 0.23
HPS4-216ENST00000493455 EFEMP1Q12805 493 aa16.5■□□□□ 0.23
HPS4-216ENST00000493455 HECTD3Q5T447 861 aa16.5■□□□□ 0.23
HPS4-216ENST00000493455 DCUN1D2Q6PH85 259 aa16.5■□□□□ 0.23
HPS4-216ENST00000493455 KIAA1328Q86T90 577 aa16.5■□□□□ 0.23
HPS4-216ENST00000493455 ZDHHC17Q8IUH5 632 aa16.5■□□□□ 0.23
HPS4-216ENST00000493455 DEFB106AQ8N104 65 aa16.5■□□□□ 0.23
HPS4-216ENST00000493455 EMC1Q8N766 993 aa16.5■□□□□ 0.23
HPS4-216ENST00000493455 ARL14EPQ8N8R7 260 aaPredicted RBP16.5■□□□□ 0.23
HPS4-216ENST00000493455 ARHGEF26Q96DR7 871 aa16.5■□□□□ 0.23
HPS4-216ENST00000493455 MCEEQ96PE7 176 aa16.5■□□□□ 0.23
HPS4-216ENST00000493455 EIF3CQ99613 913 aaKnown RBP16.5■□□□□ 0.23
HPS4-216ENST00000493455 COX16Q9P0S2 106 aa16.5■□□□□ 0.23
HPS4-216ENST00000493455 NENFQ9UMX5 172 aa16.5■□□□□ 0.23
HPS4-216ENST00000493455 NAALADL1Q9UQQ1 740 aa16.5■□□□□ 0.23
HPS4-216ENST00000493455 PCDHA13Q9Y5I0 950 aa16.5■□□□□ 0.23
HPS4-216ENST00000493455 HELZP42694 1942 aaKnown RBP16.5■□□□□ 0.23
HPS4-216ENST00000493455 ANKRD62A6NC57 917 aa16.49■□□□□ 0.23
HPS4-216ENST00000493455 ARHGAP6O43182 974 aa16.49■□□□□ 0.23
HPS4-216ENST00000493455 TLR5O60602 858 aa16.49■□□□□ 0.23
HPS4-216ENST00000493455 HSF2BPO75031 334 aa16.49■□□□□ 0.23
HPS4-216ENST00000493455 DAB1O75553 588 aa16.49■□□□□ 0.23
HPS4-216ENST00000493455 TBX18O95935 607 aa16.49■□□□□ 0.23
HPS4-216ENST00000493455 CKMP06732 381 aa16.49■□□□□ 0.23
HPS4-216ENST00000493455 MYBL1P10243 752 aa16.49■□□□□ 0.23
HPS4-216ENST00000493455 KRT3P12035 628 aa16.49■□□□□ 0.23
HPS4-216ENST00000493455 PPP3CCP48454 512 aa16.49■□□□□ 0.23
HPS4-216ENST00000493455 PSEN1P49768 467 aa16.49■□□□□ 0.23
HPS4-216ENST00000493455 YWHAZP63104 245 aaKnown RBP16.49■□□□□ 0.23
HPS4-216ENST00000493455 GPC5P78333 572 aa16.49■□□□□ 0.23
HPS4-216ENST00000493455 DCAF6Q58WW2 860 aa16.49■□□□□ 0.23
HPS4-216ENST00000493455 PTCRAQ6ISU1 281 aaPredicted RBP16.49■□□□□ 0.23
HPS4-216ENST00000493455 MIB1Q86YT6 1006 aa16.49■□□□□ 0.23
HPS4-216ENST00000493455 SCML4Q8N228 414 aa16.49■□□□□ 0.23
HPS4-216ENST00000493455 C3orf20Q8ND61 904 aa16.49■□□□□ 0.23
HPS4-216ENST00000493455 JOSD2Q8TAC2 188 aa16.49■□□□□ 0.23
HPS4-216ENST00000493455 VCPIP1Q96JH7 1222 aa16.49■□□□□ 0.23
HPS4-216ENST00000493455 NECTIN4Q96NY8 510 aa16.49■□□□□ 0.23
HPS4-216ENST00000493455 CYP2S1Q96SQ9 504 aa16.49■□□□□ 0.23
HPS4-216ENST00000493455 SMG9Q9H0W8 520 aaKnown RBP16.49■□□□□ 0.23
HPS4-216ENST00000493455 KCNF1Q9H3M0 494 aa16.49■□□□□ 0.23
HPS4-216ENST00000493455 POPDC2Q9HBU9 364 aa16.49■□□□□ 0.23
HPS4-216ENST00000493455 LUC7LQ9NQ29 371 aaKnown RBP16.49■□□□□ 0.23
HPS4-216ENST00000493455 ABCC13Q9NSE7 274 aa16.49■□□□□ 0.23
HPS4-216ENST00000493455 CTTNBP2NLQ9P2B4 639 aa16.49■□□□□ 0.23
HPS4-216ENST00000493455 NCANO14594 1321 aa16.48■□□□□ 0.23
HPS4-216ENST00000493455 NUP210Q8TEM1 1887 aaPredicted RBP16.48■□□□□ 0.23
HPS4-216ENST00000493455 TRAV19A0A0A6YYK7 116 aa16.48■□□□□ 0.23
HPS4-216ENST00000493455 HMBSP08397 361 aa16.48■□□□□ 0.23
HPS4-216ENST00000493455 ZDHHC11BP0C7U3 371 aa16.48■□□□□ 0.23
HPS4-216ENST00000493455 IRF1P10914 325 aa16.48■□□□□ 0.23
HPS4-216ENST00000493455 HDCP19113 662 aa16.48■□□□□ 0.23
HPS4-216ENST00000493455 LEXMQ3ZCV2 418 aa16.48■□□□□ 0.23
HPS4-216ENST00000493455 SYPL2Q5VXT5 272 aa16.48■□□□□ 0.23
HPS4-216ENST00000493455 SLC26A9Q7LBE3 791 aa16.48■□□□□ 0.23
HPS4-216ENST00000493455 NPAS3Q8IXF0 933 aa16.48■□□□□ 0.23
HPS4-216ENST00000493455 GADD45GIP1Q8TAE8 222 aaPredicted RBP16.48■□□□□ 0.23
HPS4-216ENST00000493455 ADAM32Q8TC27 787 aa16.48■□□□□ 0.23
HPS4-216ENST00000493455 FGF13Q92913 245 aa16.48■□□□□ 0.23
HPS4-216ENST00000493455 SLC22A12Q96S37 553 aa16.48■□□□□ 0.23
HPS4-216ENST00000493455 NUP85Q9BW27 656 aa16.48■□□□□ 0.23
HPS4-216ENST00000493455 SLC46A2Q9BY10 475 aa16.48■□□□□ 0.23
HPS4-216ENST00000493455 TASP1Q9H6P5 420 aa16.48■□□□□ 0.23
HPS4-216ENST00000493455 PARVAQ9NVD7 372 aa16.48■□□□□ 0.23
HPS4-216ENST00000493455 MTPAPQ9NVV4 582 aaKnown RBP eCLIP16.48■□□□□ 0.23
HPS4-216ENST00000493455 SMPD4Q9NXE4 827 aa16.48■□□□□ 0.23
HPS4-216ENST00000493455 FASTKD2Q9NYY8 710 aaKnown RBP eCLIP16.48■□□□□ 0.23
HPS4-216ENST00000493455 THEGQ9P2T0 379 aa16.48■□□□□ 0.23
HPS4-216ENST00000493455 SFMBT1Q9UHJ3 866 aa16.48■□□□□ 0.23
HPS4-216ENST00000493455 REXO2Q9Y3B8 237 aaKnown RBP16.48■□□□□ 0.23
HPS4-216ENST00000493455 SCINQ9Y6U3 715 aa16.48■□□□□ 0.23
HPS4-216ENST00000493455 DOCK8Q8NF50 2099 aa16.47■□□□□ 0.23
HPS4-216ENST00000493455 MSI1O43347 362 aaKnown RBP16.47■□□□□ 0.23
HPS4-216ENST00000493455 COCHO43405 550 aa16.47■□□□□ 0.23
HPS4-216ENST00000493455 PAPLNO95428 1278 aa16.47■□□□□ 0.23
HPS4-216ENST00000493455 LCA5LO95447 670 aa16.47■□□□□ 0.23
HPS4-216ENST00000493455 TMEM253P0C7T8 217 aa16.47■□□□□ 0.23
HPS4-216ENST00000493455 IL9P15248 144 aa16.47■□□□□ 0.23
HPS4-216ENST00000493455 FLT3P36888 993 aa16.47■□□□□ 0.23
HPS4-216ENST00000493455 AVPR1AP37288 418 aa16.47■□□□□ 0.23
HPS4-216ENST00000493455 SULT1E1P49888 294 aa16.47■□□□□ 0.23
HPS4-216ENST00000493455 RPL7AP62424 266 aaKnown RBP16.47■□□□□ 0.23
HPS4-216ENST00000493455 KRT83P78385 493 aa16.47■□□□□ 0.23
HPS4-216ENST00000493455 MAMLD1Q13495 774 aa16.47■□□□□ 0.23
HPS4-216ENST00000493455 CDO1Q16878 200 aa16.47■□□□□ 0.23
Retrieved 100 of 20,778 RNA–protein pairs in 18.2 ms