RNA–Protein interactions for RNA: ENST00000490788.1

HMGB1-208, Transcript of high mobility group box 1, humanhuman

TSL 2

Gene HMGB1, Length 425 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-208ENST00000490788 ADAMTS5Q9UNA0 930 aa2.61□□□□□ -1.99
HMGB1-208ENST00000490788 SSX2IPQ9Y2D8 614 aa2.61□□□□□ -1.99
HMGB1-208ENST00000490788 PCDHGB6Q9Y5F9 930 aa2.61□□□□□ -1.99
HMGB1-208ENST00000490788 CDY1Q9Y6F8 540 aa2.61□□□□□ -1.99
HMGB1-208ENST00000490788 SPHKAPQ2M3C7 1700 aa2.61□□□□□ -1.99
HMGB1-208ENST00000490788 ABCC3O15438 1527 aa2.61□□□□□ -1.99
HMGB1-208ENST00000490788 PRDM15P57071 1507 aaPredicted RBP2.61□□□□□ -1.99
HMGB1-208ENST00000490788 ADGRB2O60241 1585 aa2.61□□□□□ -1.99
HMGB1-208ENST00000490788 BRWD3Q6RI45 1802 aa2.61□□□□□ -1.99
HMGB1-208ENST00000490788 PTCH1Q13635 1447 aa2.6□□□□□ -1.99
HMGB1-208ENST00000490788 MANSC4A6NHS7 340 aaPredicted RBP2.6□□□□□ -1.99
HMGB1-208ENST00000490788 LRRC3CA6NJW4 275 aa2.6□□□□□ -1.99
HMGB1-208ENST00000490788 TARM1B6A8C7 271 aa2.6□□□□□ -1.99
HMGB1-208ENST00000490788 UBE2Q2LH0YL09 131 aa2.6□□□□□ -1.99
HMGB1-208ENST00000490788 H7C4K7 107 aa2.6□□□□□ -1.99
HMGB1-208ENST00000490788 AP4M1O00189 453 aa2.6□□□□□ -1.99
HMGB1-208ENST00000490788 CES2O00748 559 aa2.6□□□□□ -1.99
HMGB1-208ENST00000490788 KIF3BO15066 747 aa2.6□□□□□ -1.99
HMGB1-208ENST00000490788 THAP12O43422 761 aa2.6□□□□□ -1.99
HMGB1-208ENST00000490788 EXOC3O60645 756 aa2.6□□□□□ -1.99
HMGB1-208ENST00000490788 SNX2O60749 519 aa2.6□□□□□ -1.99
HMGB1-208ENST00000490788 PRKCGP05129 697 aa2.6□□□□□ -1.99
HMGB1-208ENST00000490788 CSF1RP07333 972 aa2.6□□□□□ -1.99
HMGB1-208ENST00000490788 HMGB1P09429 215 aaKnown RBP2.6□□□□□ -1.99
HMGB1-208ENST00000490788 ELFN1P0C7U0 828 aa2.6□□□□□ -1.99
HMGB1-208ENST00000490788 CDK4P11802 303 aa2.6□□□□□ -1.99
HMGB1-208ENST00000490788 CD19P15391 556 aa2.6□□□□□ -1.99
HMGB1-208ENST00000490788 ACVR2AP27037 513 aa2.6□□□□□ -1.99
HMGB1-208ENST00000490788 CARSP49589 748 aaKnown RBP2.6□□□□□ -1.99
HMGB1-208ENST00000490788 CPT1AP50416 773 aa2.6□□□□□ -1.99
HMGB1-208ENST00000490788 LBX1P52954 281 aa2.6□□□□□ -1.99
HMGB1-208ENST00000490788 BCAT1P54687 386 aa2.6□□□□□ -1.99
HMGB1-208ENST00000490788 C21orf58P58505 322 aa2.6□□□□□ -1.99
HMGB1-208ENST00000490788 HOXA4Q00056 320 aaPredicted RBP2.6□□□□□ -1.99
HMGB1-208ENST00000490788 SP2Q02086 613 aa2.6□□□□□ -1.99
HMGB1-208ENST00000490788 NHLH1Q02575 133 aa2.6□□□□□ -1.99
HMGB1-208ENST00000490788 SLC10A2Q12908 348 aaPredicted RBP2.6□□□□□ -1.99
HMGB1-208ENST00000490788 LRCH2Q5VUJ6 765 aa2.6□□□□□ -1.99
HMGB1-208ENST00000490788 SLC9A4Q6AI14 798 aa2.6□□□□□ -1.99
HMGB1-208ENST00000490788 MZT2AQ6P582 158 aa2.6□□□□□ -1.99
HMGB1-208ENST00000490788 TRIM72Q6ZMU5 477 aa2.6□□□□□ -1.99
HMGB1-208ENST00000490788 ZNF788Q6ZQV5 615 aa2.6□□□□□ -1.99
HMGB1-208ENST00000490788 Q6ZWC4 215 aa2.6□□□□□ -1.99
HMGB1-208ENST00000490788 RNF44Q7L0R7 432 aa2.6□□□□□ -1.99
HMGB1-208ENST00000490788 COL23A1Q86Y22 540 aaPredicted RBP2.6□□□□□ -1.99
HMGB1-208ENST00000490788 OR56A3Q8NH54 315 aa2.6□□□□□ -1.99
HMGB1-208ENST00000490788 SOCS4Q8WXH5 440 aa2.6□□□□□ -1.99
HMGB1-208ENST00000490788 STRBPQ96SI9 672 aaKnown RBP2.6□□□□□ -1.99
HMGB1-208ENST00000490788 C17orf80Q9BSJ5 609 aa2.6□□□□□ -1.99
HMGB1-208ENST00000490788 KRTAP4-4Q9BYR3 166 aa2.6□□□□□ -1.99
HMGB1-208ENST00000490788 INO80BQ9C086 356 aaPredicted RBP2.6□□□□□ -1.99
HMGB1-208ENST00000490788 BTBD1Q9H0C5 482 aa2.6□□□□□ -1.99
HMGB1-208ENST00000490788 BHMT2Q9H2M3 363 aa2.6□□□□□ -1.99
HMGB1-208ENST00000490788 FAM83DQ9H4H8 585 aa2.6□□□□□ -1.99
HMGB1-208ENST00000490788 SMURF2Q9HAU4 748 aa2.6□□□□□ -1.99
HMGB1-208ENST00000490788 XPNPEP3Q9NQH7 507 aa2.6□□□□□ -1.99
HMGB1-208ENST00000490788 SNX15Q9NRS6 342 aa2.6□□□□□ -1.99
HMGB1-208ENST00000490788 TBC1D23Q9NUY8 699 aa2.6□□□□□ -1.99
HMGB1-208ENST00000490788 STK32BQ9NY57 414 aa2.6□□□□□ -1.99
HMGB1-208ENST00000490788 DLL3Q9NYJ7 618 aa2.6□□□□□ -1.99
HMGB1-208ENST00000490788 CHPF2Q9P2E5 772 aa2.6□□□□□ -1.99
HMGB1-208ENST00000490788 AMFRQ9UKV5 643 aa2.6□□□□□ -1.99
HMGB1-208ENST00000490788 CORO2BQ9UQ03 480 aa2.6□□□□□ -1.99
HMGB1-208ENST00000490788 FAM50BQ9Y247 325 aa2.6□□□□□ -1.99
HMGB1-208ENST00000490788 DRG1Q9Y295 367 aaKnown RBP2.6□□□□□ -1.99
HMGB1-208ENST00000490788 TBC1D30Q9Y2I9 924 aa2.6□□□□□ -1.99
HMGB1-208ENST00000490788 SNX14Q9Y5W7 946 aa2.6□□□□□ -1.99
HMGB1-208ENST00000490788 BIVM-ERCC5R4GMW8 1640 aa2.6□□□□□ -1.99
HMGB1-208ENST00000490788 ZC3H13Q5T200 1668 aaKnown RBP2.6□□□□□ -1.99
HMGB1-208ENST00000490788 DISP2A7MBM2 1401 aa2.59□□□□□ -1.99
HMGB1-208ENST00000490788 UTRNP46939 3433 aa2.59□□□□□ -1.99
HMGB1-208ENST00000490788 UGGT2Q9NYU1 1516 aa2.59□□□□□ -1.99
HMGB1-208ENST00000490788 GLI3P10071 1580 aa2.59□□□□□ -1.99
HMGB1-208ENST00000490788 A6NNZ2 444 aa2.59□□□□□ -1.99
HMGB1-208ENST00000490788 KRTAP29-1A8MX34 341 aaPredicted RBP2.59□□□□□ -1.99
HMGB1-208ENST00000490788 GCATO75600 419 aa2.59□□□□□ -1.99
HMGB1-208ENST00000490788 PARNO95453 639 aaKnown RBP2.59□□□□□ -1.99
HMGB1-208ENST00000490788 PARP1P09874 1014 aaKnown RBP2.59□□□□□ -1.99
HMGB1-208ENST00000490788 NBPF7P0C2Y1 421 aaPredicted RBP2.59□□□□□ -1.99
HMGB1-208ENST00000490788 TXNP10599 105 aaKnown RBP2.59□□□□□ -1.99
HMGB1-208ENST00000490788 MYCLP12524 364 aaPredicted RBP2.59□□□□□ -1.99
HMGB1-208ENST00000490788 JUPP14923 745 aa2.59□□□□□ -1.99
HMGB1-208ENST00000490788 PHKG2P15735 406 aa2.59□□□□□ -1.99
HMGB1-208ENST00000490788 ZNF37AP17032 561 aaPredicted RBP2.59□□□□□ -1.99
HMGB1-208ENST00000490788 FBLP22087 321 aaKnown RBP2.59□□□□□ -1.99
HMGB1-208ENST00000490788 IL1R2P27930 398 aa2.59□□□□□ -1.99
HMGB1-208ENST00000490788 PGDP52209 483 aa2.59□□□□□ -1.99
HMGB1-208ENST00000490788 E2F1Q01094 437 aa2.59□□□□□ -1.99
HMGB1-208ENST00000490788 SRSF4Q08170 494 aaKnown RBP2.59□□□□□ -1.99
HMGB1-208ENST00000490788 IFIT5Q13325 482 aaKnown RBP2.59□□□□□ -1.99
HMGB1-208ENST00000490788 SEMA5AQ13591 1074 aa2.59□□□□□ -1.99
HMGB1-208ENST00000490788 HLTFQ14527 1009 aaKnown RBP eCLIP2.59□□□□□ -1.99
HMGB1-208ENST00000490788 SRSF7Q16629 238 aaKnown RBP eCLIP2.59□□□□□ -1.99
HMGB1-208ENST00000490788 LY6KQ17RY6 165 aa2.59□□□□□ -1.99
HMGB1-208ENST00000490788 PTCHD3Q3KNS1 767 aa2.59□□□□□ -1.99
HMGB1-208ENST00000490788 ZIK1Q3SY52 487 aaPredicted RBP2.59□□□□□ -1.99
HMGB1-208ENST00000490788 COBLL1Q53SF7 1204 aa2.59□□□□□ -1.99
HMGB1-208ENST00000490788 TMEM63BQ5T3F8 832 aa2.59□□□□□ -1.99
HMGB1-208ENST00000490788 PRAMEF17Q5VTA0 474 aa2.59□□□□□ -1.99
HMGB1-208ENST00000490788 ZDHHC24Q6UX98 284 aa2.59□□□□□ -1.99
Retrieved 100 of 20,778 RNA–protein pairs in 33.4 ms