RNA–Protein interactions for RNA: ENST00000489562.5

C9orf3-221, Transcript of chromosome 9 open reading frame 3, humanhuman

TSL 2

Gene C9orf3, Length 646 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
C9orf3-221ENST00000489562 SCD5Q86SK9 330 aa14.54□□□□□ -0.08
C9orf3-221ENST00000489562 C12orf76Q8N812 135 aaPredicted RBP14.54□□□□□ -0.08
C9orf3-221ENST00000489562 FEZF2Q8TBJ5 459 aa14.54□□□□□ -0.08
C9orf3-221ENST00000489562 ZNF564Q8TBZ8 553 aaPredicted RBP14.54□□□□□ -0.08
C9orf3-221ENST00000489562 FNIP1Q8TF40 1166 aa14.54□□□□□ -0.08
C9orf3-221ENST00000489562 MRPS31Q92665 395 aaKnown RBP14.54□□□□□ -0.08
C9orf3-221ENST00000489562 ARHGEF26Q96DR7 871 aa14.54□□□□□ -0.08
C9orf3-221ENST00000489562 PIWIL1Q96J94 861 aaKnown RBP14.54□□□□□ -0.08
C9orf3-221ENST00000489562 SLC2A13Q96QE2 648 aa14.54□□□□□ -0.08
C9orf3-221ENST00000489562 ADAM7Q9H2U9 754 aa14.54□□□□□ -0.08
C9orf3-221ENST00000489562 ZNF334Q9HCZ1 680 aaPredicted RBP14.54□□□□□ -0.08
C9orf3-221ENST00000489562 CLEC1BQ9P126 229 aa14.54□□□□□ -0.08
C9orf3-221ENST00000489562 DNMT3BQ9UBC3 853 aaKnown RBP14.54□□□□□ -0.08
C9orf3-221ENST00000489562 STAP1Q9ULZ2 295 aa14.54□□□□□ -0.08
C9orf3-221ENST00000489562 CLUHO75153 1309 aa14.54□□□□□ -0.08
C9orf3-221ENST00000489562 NUP210Q8TEM1 1887 aaPredicted RBP14.54□□□□□ -0.08
C9orf3-221ENST00000489562 ZNF840PA6NDX5 716 aa14.53□□□□□ -0.08
C9orf3-221ENST00000489562 RCCD1A6NED2 376 aa14.53□□□□□ -0.08
C9orf3-221ENST00000489562 TMEM191CA6NGB0 347 aa14.53□□□□□ -0.08
C9orf3-221ENST00000489562 CAPN9O14815 690 aa14.53□□□□□ -0.08
C9orf3-221ENST00000489562 MYL4P12829 197 aa14.53□□□□□ -0.08
C9orf3-221ENST00000489562 DDX6P26196 483 aaKnown RBP eCLIP14.53□□□□□ -0.08
C9orf3-221ENST00000489562 NOS2P35228 1153 aa14.53□□□□□ -0.08
C9orf3-221ENST00000489562 MATKP42679 507 aa14.53□□□□□ -0.08
C9orf3-221ENST00000489562 ARHGAP29Q52LW3 1261 aa14.53□□□□□ -0.08
C9orf3-221ENST00000489562 ARHGAP15Q53QZ3 475 aa14.53□□□□□ -0.08
C9orf3-221ENST00000489562 KLHDC10Q6PID8 442 aa14.53□□□□□ -0.08
C9orf3-221ENST00000489562 EP400NLQ6ZTU2 488 aa14.53□□□□□ -0.08
C9orf3-221ENST00000489562 RSRC2Q7L4I2 434 aaKnown RBP14.53□□□□□ -0.08
C9orf3-221ENST00000489562 PHLDB2Q86SQ0 1253 aa14.53□□□□□ -0.08
C9orf3-221ENST00000489562 HS6ST3Q8IZP7 471 aa14.53□□□□□ -0.08
C9orf3-221ENST00000489562 RNF10Q8N5U6 811 aaKnown RBP14.53□□□□□ -0.08
C9orf3-221ENST00000489562 SLC35G2Q8TBE7 412 aa14.53□□□□□ -0.08
C9orf3-221ENST00000489562 RNF139Q8WU17 664 aa14.53□□□□□ -0.08
C9orf3-221ENST00000489562 NDRG1Q92597 394 aaKnown RBP14.53□□□□□ -0.08
C9orf3-221ENST00000489562 KHSRPQ92945 711 aaKnown RBP eCLIP14.53□□□□□ -0.08
C9orf3-221ENST00000489562 RIPOR3Q96MK2 946 aa14.53□□□□□ -0.08
C9orf3-221ENST00000489562 MCEEQ96PE7 176 aa14.53□□□□□ -0.08
C9orf3-221ENST00000489562 LACRTQ9GZZ8 138 aa14.53□□□□□ -0.08
C9orf3-221ENST00000489562 MTPAPQ9NVV4 582 aaKnown RBP eCLIP14.53□□□□□ -0.08
C9orf3-221ENST00000489562 HCFC1R1Q9NWW0 138 aa14.53□□□□□ -0.08
C9orf3-221ENST00000489562 FASTKD2Q9NYY8 710 aaKnown RBP eCLIP14.53□□□□□ -0.08
C9orf3-221ENST00000489562 CHORDC1Q9UHD1 332 aaPredicted RBP14.53□□□□□ -0.08
C9orf3-221ENST00000489562 PYCARDQ9ULZ3 195 aa14.53□□□□□ -0.08
C9orf3-221ENST00000489562 C2CD4BA6NLJ0 364 aa14.52□□□□□ -0.09
C9orf3-221ENST00000489562 MYO1FO00160 1098 aa14.52□□□□□ -0.09
C9orf3-221ENST00000489562 DPYSL4O14531 572 aa14.52□□□□□ -0.09
C9orf3-221ENST00000489562 TADA3O75528 432 aa14.52□□□□□ -0.09
C9orf3-221ENST00000489562 GRAP2O75791 330 aa14.52□□□□□ -0.09
C9orf3-221ENST00000489562 NCAM1P13591 858 aa14.52□□□□□ -0.09
C9orf3-221ENST00000489562 PDGFRAP16234 1089 aa14.52□□□□□ -0.09
C9orf3-221ENST00000489562 GPD1P21695 349 aa14.52□□□□□ -0.09
C9orf3-221ENST00000489562 SDC4P31431 198 aa14.52□□□□□ -0.09
C9orf3-221ENST00000489562 RFC1P35251 1148 aaPredicted RBP14.52□□□□□ -0.09
C9orf3-221ENST00000489562 LTBRP36941 435 aa14.52□□□□□ -0.09
C9orf3-221ENST00000489562 ARHGAP25P42331 645 aa14.52□□□□□ -0.09
C9orf3-221ENST00000489562 MTHFRP42898 656 aa14.52□□□□□ -0.09
C9orf3-221ENST00000489562 PTPN9P43378 593 aa14.52□□□□□ -0.09
C9orf3-221ENST00000489562 NOP2P46087 812 aaKnown RBP14.52□□□□□ -0.09
C9orf3-221ENST00000489562 RNASE9P60153 205 aaKnown RBP14.52□□□□□ -0.09
C9orf3-221ENST00000489562 RPL7AP62424 266 aaKnown RBP14.52□□□□□ -0.09
C9orf3-221ENST00000489562 ACAP1Q15027 740 aa14.52□□□□□ -0.09
C9orf3-221ENST00000489562 TAF5Q15542 800 aa14.52□□□□□ -0.09
C9orf3-221ENST00000489562 PRSS36Q5K4E3 855 aa14.52□□□□□ -0.09
C9orf3-221ENST00000489562 ATAT1Q5SQI0 421 aa14.52□□□□□ -0.09
C9orf3-221ENST00000489562 HECTD3Q5T447 861 aa14.52□□□□□ -0.09
C9orf3-221ENST00000489562 MSANTD2Q6P1R3 559 aa14.52□□□□□ -0.09
C9orf3-221ENST00000489562 HFE2Q6ZVN8 426 aa14.52□□□□□ -0.09
C9orf3-221ENST00000489562 GAREM2Q75VX8 874 aa14.52□□□□□ -0.09
C9orf3-221ENST00000489562 GRASPQ7Z6J2 395 aaPredicted RBP14.52□□□□□ -0.09
C9orf3-221ENST00000489562 TMEM150AQ86TG1 271 aa14.52□□□□□ -0.09
C9orf3-221ENST00000489562 DEFB106AQ8N104 65 aa14.52□□□□□ -0.09
C9orf3-221ENST00000489562 MSLNLQ96KJ4 702 aa14.52□□□□□ -0.09
C9orf3-221ENST00000489562 NECTIN4Q96NY8 510 aa14.52□□□□□ -0.09
C9orf3-221ENST00000489562 NCAPGQ9BPX3 1015 aa14.52□□□□□ -0.09
C9orf3-221ENST00000489562 DDX23Q9BUQ8 820 aaKnown RBP14.52□□□□□ -0.09
C9orf3-221ENST00000489562 S1PR5Q9H228 398 aa14.52□□□□□ -0.09
C9orf3-221ENST00000489562 ATXN3LQ9H3M9 355 aa14.52□□□□□ -0.09
C9orf3-221ENST00000489562 NMUR1Q9HB89 426 aa14.52□□□□□ -0.09
C9orf3-221ENST00000489562 KCND1Q9NSA2 647 aa14.52□□□□□ -0.09
C9orf3-221ENST00000489562 IP6K2Q9UHH9 426 aa14.52□□□□□ -0.09
C9orf3-221ENST00000489562 ANAPC7Q9UJX3 599 aa14.52□□□□□ -0.09
C9orf3-221ENST00000489562 ZKSCAN5Q9Y2L8 839 aa14.52□□□□□ -0.09
C9orf3-221ENST00000489562 DOCK8Q8NF50 2099 aa14.51□□□□□ -0.09
C9orf3-221ENST00000489562 A0A1W2PRU2 124 aa14.51□□□□□ -0.09
C9orf3-221ENST00000489562 TLR5O60602 858 aa14.51□□□□□ -0.09
C9orf3-221ENST00000489562 ABL1P00519 1130 aa14.51□□□□□ -0.09
C9orf3-221ENST00000489562 FYNP06241 537 aa14.51□□□□□ -0.09
C9orf3-221ENST00000489562 RARGP13631 454 aa14.51□□□□□ -0.09
C9orf3-221ENST00000489562 DEKP35659 375 aaKnown RBP14.51□□□□□ -0.09
C9orf3-221ENST00000489562 FLT3P36888 993 aa14.51□□□□□ -0.09
C9orf3-221ENST00000489562 ZNF143P52747 638 aaPredicted RBP14.51□□□□□ -0.09
C9orf3-221ENST00000489562 PIGHQ14442 188 aaPredicted RBP14.51□□□□□ -0.09
C9orf3-221ENST00000489562 SLC25A52Q3SY17 297 aa14.51□□□□□ -0.09
C9orf3-221ENST00000489562 DCAF6Q58WW2 860 aa14.51□□□□□ -0.09
C9orf3-221ENST00000489562 CCAR2Q8N163 923 aaKnown RBP14.51□□□□□ -0.09
C9orf3-221ENST00000489562 SMRP1Q8NCR6 262 aa14.51□□□□□ -0.09
C9orf3-221ENST00000489562 JOSD2Q8TAC2 188 aa14.51□□□□□ -0.09
C9orf3-221ENST00000489562 SHKBP1Q8TBC3 707 aa14.51□□□□□ -0.09
C9orf3-221ENST00000489562 RXFP2Q8WXD0 754 aa14.51□□□□□ -0.09
Retrieved 100 of 20,778 RNA–protein pairs in 30.7 ms