RNA–Protein interactions for RNA: ENST00000486023.1

COL6A1-204, Transcript of collagen type VI alpha 1 chain, humanhuman

TSL 2

Gene COL6A1, Length 968 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A1-204ENST00000486023 HSP90AA4PQ58FG1 418 aa18.56■□□□□ 0.56
COL6A1-204ENST00000486023 FOXR2Q6PJQ5 311 aa18.56■□□□□ 0.56
COL6A1-204ENST00000486023 TPGS1Q6ZTW0 290 aa18.56■□□□□ 0.56
COL6A1-204ENST00000486023 CCDC186Q7Z3E2 898 aa18.56■□□□□ 0.56
COL6A1-204ENST00000486023 TADA2BQ86TJ2 420 aa18.56■□□□□ 0.56
COL6A1-204ENST00000486023 LONP2Q86WA8 852 aa18.56■□□□□ 0.56
COL6A1-204ENST00000486023 C12orf40Q86WS4 652 aa18.56■□□□□ 0.56
COL6A1-204ENST00000486023 TMEM25Q86YD3 366 aa18.56■□□□□ 0.56
COL6A1-204ENST00000486023 SFTPA1Q8IWL2 248 aa18.56■□□□□ 0.56
COL6A1-204ENST00000486023 MLKLQ8NB16 471 aa18.56■□□□□ 0.56
COL6A1-204ENST00000486023 SUMF1Q8NBK3 374 aa18.56■□□□□ 0.56
COL6A1-204ENST00000486023 RBBP8NLQ8NC74 664 aaPredicted RBP18.56■□□□□ 0.56
COL6A1-204ENST00000486023 LMO3Q8TAP4 145 aa18.56■□□□□ 0.56
COL6A1-204ENST00000486023 TFAP2BQ92481 460 aa18.56■□□□□ 0.56
COL6A1-204ENST00000486023 RUBCNQ92622 972 aa18.56■□□□□ 0.56
COL6A1-204ENST00000486023 NELL1Q92832 810 aa18.56■□□□□ 0.56
COL6A1-204ENST00000486023 BHMTQ93088 406 aa18.56■□□□□ 0.56
COL6A1-204ENST00000486023 CNOT6LQ96LI5 555 aaKnown RBP18.56■□□□□ 0.56
COL6A1-204ENST00000486023 IPO9Q96P70 1041 aaKnown RBP18.56■□□□□ 0.56
COL6A1-204ENST00000486023 HHIPQ96QV1 700 aa18.56■□□□□ 0.56
COL6A1-204ENST00000486023 PNKPQ96T60 521 aa18.56■□□□□ 0.56
COL6A1-204ENST00000486023 ULBP1Q9BZM6 244 aa18.56■□□□□ 0.56
COL6A1-204ENST00000486023 FAM124BQ9H5Z6 455 aaPredicted RBP18.56■□□□□ 0.56
COL6A1-204ENST00000486023 UBE2TQ9NPD8 197 aaPredicted RBP18.56■□□□□ 0.56
COL6A1-204ENST00000486023 RAB23Q9ULC3 237 aa18.56■□□□□ 0.56
COL6A1-204ENST00000486023 SMG5Q9UPR3 1016 aaKnown RBP18.56■□□□□ 0.56
COL6A1-204ENST00000486023 USP3Q9Y6I4 520 aa18.56■□□□□ 0.56
COL6A1-204ENST00000486023 XPO1O14980 1071 aaKnown RBP18.55■□□□□ 0.56
COL6A1-204ENST00000486023 PMM2O15305 246 aa18.55■□□□□ 0.56
COL6A1-204ENST00000486023 HRO43593 1189 aa18.55■□□□□ 0.56
COL6A1-204ENST00000486023 LILRB5O75023 590 aa18.55■□□□□ 0.56
COL6A1-204ENST00000486023 ZBED1O96006 694 aa18.55■□□□□ 0.56
COL6A1-204ENST00000486023 BRD2P25440 801 aaKnown RBP18.55■□□□□ 0.56
COL6A1-204ENST00000486023 MTIF2P46199 727 aaKnown RBP18.55■□□□□ 0.56
COL6A1-204ENST00000486023 PLA2G4AP47712 749 aa18.55■□□□□ 0.56
COL6A1-204ENST00000486023 PSEN1P49768 467 aa18.55■□□□□ 0.56
COL6A1-204ENST00000486023 BCAT1P54687 386 aa18.55■□□□□ 0.56
COL6A1-204ENST00000486023 YWHAGP61981 247 aaKnown RBP eCLIP18.55■□□□□ 0.56
COL6A1-204ENST00000486023 ADIGQ0VDE8 80 aa18.55■□□□□ 0.56
COL6A1-204ENST00000486023 BST2Q10589 180 aaKnown RBP18.55■□□□□ 0.56
COL6A1-204ENST00000486023 SIM2Q14190 667 aaPredicted RBP18.55■□□□□ 0.56
COL6A1-204ENST00000486023 GAB4Q2WGN9 574 aa18.55■□□□□ 0.56
COL6A1-204ENST00000486023 CEP68Q76N32 757 aa18.55■□□□□ 0.56
COL6A1-204ENST00000486023 SIX6OS1Q8N1H7 587 aa18.55■□□□□ 0.56
COL6A1-204ENST00000486023 CCDC33Q8N5R6 958 aa18.55■□□□□ 0.56
COL6A1-204ENST00000486023 UBR7Q8N806 425 aa18.55■□□□□ 0.56
COL6A1-204ENST00000486023 UBXN6Q9BZV1 441 aa18.55■□□□□ 0.56
COL6A1-204ENST00000486023 ZDHHC4Q9NPG8 344 aa18.55■□□□□ 0.56
COL6A1-204ENST00000486023 ARHGEF4Q9NR80 690 aa18.55■□□□□ 0.56
COL6A1-204ENST00000486023 SPHK2Q9NRA0 654 aa18.55■□□□□ 0.56
COL6A1-204ENST00000486023 KIAA1257Q9ULG3 409 aa18.55■□□□□ 0.56
COL6A1-204ENST00000486023 K7EQS6 105 aa18.54■□□□□ 0.56
COL6A1-204ENST00000486023 M0QYV0 167 aa18.54■□□□□ 0.56
COL6A1-204ENST00000486023 O00370 1275 aa18.54■□□□□ 0.56
COL6A1-204ENST00000486023 APODP05090 189 aa18.54■□□□□ 0.56
COL6A1-204ENST00000486023 PAEPP09466 180 aa18.54■□□□□ 0.56
COL6A1-204ENST00000486023 TIE1P35590 1138 aa18.54■□□□□ 0.56
COL6A1-204ENST00000486023 MARSP56192 900 aaKnown RBP18.54■□□□□ 0.56
COL6A1-204ENST00000486023 MESP2Q0VG99 397 aa18.54■□□□□ 0.56
COL6A1-204ENST00000486023 GJB7Q6PEY0 223 aa18.54■□□□□ 0.56
COL6A1-204ENST00000486023 ARHGAP18Q8N392 663 aa18.54■□□□□ 0.56
COL6A1-204ENST00000486023 OTUB2Q96DC9 234 aa18.54■□□□□ 0.56
COL6A1-204ENST00000486023 MED15Q96RN5 788 aa18.54■□□□□ 0.56
COL6A1-204ENST00000486023 LMBRD1Q9NUN5 540 aa18.54■□□□□ 0.56
COL6A1-204ENST00000486023 FRYLO94915 3013 aa18.54■□□□□ 0.56
COL6A1-204ENST00000486023 PATJQ8NI35 1801 aa18.53■□□□□ 0.56
COL6A1-204ENST00000486023 SLC12A8A0AV02 714 aa18.53■□□□□ 0.56
COL6A1-204ENST00000486023 TBC1D3BA6NDS4 549 aa18.53■□□□□ 0.56
COL6A1-204ENST00000486023 NEDD8-MDP1E9PL57 170 aa18.53■□□□□ 0.56
COL6A1-204ENST00000486023 KAT7O95251 611 aa18.53■□□□□ 0.56
COL6A1-204ENST00000486023 USP8P40818 1118 aa18.53■□□□□ 0.56
COL6A1-204ENST00000486023 DMC1Q14565 340 aa18.53■□□□□ 0.56
COL6A1-204ENST00000486023 ARHGAP44Q17R89 818 aa18.53■□□□□ 0.56
COL6A1-204ENST00000486023 DPCR1Q3MIW9 517 aa18.53■□□□□ 0.56
COL6A1-204ENST00000486023 RAB41Q5JT25 222 aa18.53■□□□□ 0.56
COL6A1-204ENST00000486023 EMC10Q5UCC4 262 aa18.53■□□□□ 0.56
COL6A1-204ENST00000486023 HTR3DQ70Z44 454 aa18.53■□□□□ 0.56
COL6A1-204ENST00000486023 KIAA1958Q8N8K9 716 aa18.53■□□□□ 0.56
COL6A1-204ENST00000486023 EDEM1Q92611 657 aa18.53■□□□□ 0.56
COL6A1-204ENST00000486023 SECISBP2LQ93073 1101 aaKnown RBP18.53■□□□□ 0.56
COL6A1-204ENST00000486023 KREMEN1Q96MU8 473 aa18.53■□□□□ 0.56
COL6A1-204ENST00000486023 CFAP54Q96N23 3096 aa18.53■□□□□ 0.56
COL6A1-204ENST00000486023 CDK5RAP1Q96SZ6 601 aaKnown RBP18.53■□□□□ 0.56
COL6A1-204ENST00000486023 BBS2Q9BXC9 721 aa18.53■□□□□ 0.56
COL6A1-204ENST00000486023 EPC1Q9H2F5 836 aa18.53■□□□□ 0.56
COL6A1-204ENST00000486023 CLIC5Q9NZA1 410 aa18.53■□□□□ 0.56
COL6A1-204ENST00000486023 MYH10P35580 1976 aa18.53■□□□□ 0.56
COL6A1-204ENST00000486023 PES1O00541 588 aaKnown RBP18.52■□□□□ 0.56
COL6A1-204ENST00000486023 TRIM24O15164 1050 aa18.52■□□□□ 0.56
COL6A1-204ENST00000486023 PAPSS2O95340 614 aaPredicted RBP18.52■□□□□ 0.56
COL6A1-204ENST00000486023 SETSIPP0DME0 302 aa18.52■□□□□ 0.56
COL6A1-204ENST00000486023 SLC9A1P19634 815 aa18.52■□□□□ 0.56
COL6A1-204ENST00000486023 APBA1Q02410 837 aa18.52■□□□□ 0.56
COL6A1-204ENST00000486023 GCNT1Q02742 428 aa18.52■□□□□ 0.56
COL6A1-204ENST00000486023 LCLAT1Q6UWP7 414 aa18.52■□□□□ 0.56
COL6A1-204ENST00000486023 RNF139Q8WU17 664 aa18.52■□□□□ 0.56
COL6A1-204ENST00000486023 ACDQ96AP0 544 aa18.52■□□□□ 0.56
COL6A1-204ENST00000486023 ZSWIM1Q9BR11 485 aa18.52■□□□□ 0.56
COL6A1-204ENST00000486023 MIS12Q9H081 205 aa18.52■□□□□ 0.56
COL6A1-204ENST00000486023 PLK2Q9NYY3 685 aa18.52■□□□□ 0.56
Retrieved 100 of 20,778 RNA–protein pairs in 31.3 ms