RNA–Protein interactions for RNA: ENST00000485943.1

USP40-216, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 4

Gene USP40, Length 568 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-216ENST00000485943 CCR2P41597 374 aa8.45□□□□□ -1.06
USP40-216ENST00000485943 STAT1P42224 750 aa8.45□□□□□ -1.06
USP40-216ENST00000485943 RGS7P49802 495 aa8.45□□□□□ -1.06
USP40-216ENST00000485943 TKTL1P51854 596 aa8.45□□□□□ -1.06
USP40-216ENST00000485943 COPB1P53618 953 aaKnown RBP8.45□□□□□ -1.06
USP40-216ENST00000485943 GPC5P78333 572 aa8.45□□□□□ -1.06
USP40-216ENST00000485943 SKOR1P84550 965 aa8.45□□□□□ -1.06
USP40-216ENST00000485943 PRKCQQ04759 706 aa8.45□□□□□ -1.06
USP40-216ENST00000485943 MTF1Q14872 753 aa8.45□□□□□ -1.06
USP40-216ENST00000485943 AGERQ15109 404 aa8.45□□□□□ -1.06
USP40-216ENST00000485943 MLF2Q15773 248 aaPredicted RBP8.45□□□□□ -1.06
USP40-216ENST00000485943 MAP7D1Q3KQU3 841 aa8.45□□□□□ -1.06
USP40-216ENST00000485943 ZSCAN23Q3MJ62 389 aa8.45□□□□□ -1.06
USP40-216ENST00000485943 CRTC2Q53ET0 693 aaPredicted RBP8.45□□□□□ -1.06
USP40-216ENST00000485943 STXBP5Q5T5C0 1151 aa8.45□□□□□ -1.06
USP40-216ENST00000485943 ZNF852Q6ZMS4 543 aa8.45□□□□□ -1.06
USP40-216ENST00000485943 TPRG1Q6ZUI0 275 aa8.45□□□□□ -1.06
USP40-216ENST00000485943 LIMS2Q7Z4I7 341 aa8.45□□□□□ -1.06
USP40-216ENST00000485943 MIB1Q86YT6 1006 aa8.45□□□□□ -1.06
USP40-216ENST00000485943 TMC8Q8IU68 726 aa8.45□□□□□ -1.06
USP40-216ENST00000485943 MFSD6LQ8IWD5 586 aa8.45□□□□□ -1.06
USP40-216ENST00000485943 SCAMP5Q8TAC9 235 aa8.45□□□□□ -1.06
USP40-216ENST00000485943 STK32AQ8WU08 396 aa8.45□□□□□ -1.06
USP40-216ENST00000485943 DNASE1L2Q92874 299 aa8.45□□□□□ -1.06
USP40-216ENST00000485943 ATP2A3Q93084 1043 aa8.45□□□□□ -1.06
USP40-216ENST00000485943 RNF34Q969K3 372 aa8.45□□□□□ -1.06
USP40-216ENST00000485943 MYRFLQ96LU7 910 aa8.45□□□□□ -1.06
USP40-216ENST00000485943 TWNKQ96RR1 684 aa8.45□□□□□ -1.06
USP40-216ENST00000485943 BPIFA3Q9BQP9 254 aa8.45□□□□□ -1.06
USP40-216ENST00000485943 SMG9Q9H0W8 520 aaKnown RBP8.45□□□□□ -1.06
USP40-216ENST00000485943 C8orf33Q9H7E9 229 aaPredicted RBP8.45□□□□□ -1.06
USP40-216ENST00000485943 CD320Q9NPF0 282 aa8.45□□□□□ -1.06
USP40-216ENST00000485943 NLRC4Q9NPP4 1024 aa8.45□□□□□ -1.06
USP40-216ENST00000485943 OLA1Q9NTK5 396 aaKnown RBP8.45□□□□□ -1.06
USP40-216ENST00000485943 TBC1D14Q9P2M4 693 aa8.45□□□□□ -1.06
USP40-216ENST00000485943 NDRG2Q9UN36 371 aaKnown RBP8.45□□□□□ -1.06
USP40-216ENST00000485943 DAAM1Q9Y4D1 1078 aa8.45□□□□□ -1.06
USP40-216ENST00000485943 CPQQ9Y646 472 aa8.45□□□□□ -1.06
USP40-216ENST00000485943 NCOR1O75376 2440 aa8.45□□□□□ -1.06
USP40-216ENST00000485943 NUP210Q8TEM1 1887 aaPredicted RBP8.45□□□□□ -1.06
USP40-216ENST00000485943 C2orf78A6NCI8 922 aa8.44□□□□□ -1.06
USP40-216ENST00000485943 CHADO15335 359 aa8.44□□□□□ -1.06
USP40-216ENST00000485943 ZBTB24O43167 697 aaPredicted RBP8.44□□□□□ -1.06
USP40-216ENST00000485943 CYP26A1O43174 497 aa8.44□□□□□ -1.06
USP40-216ENST00000485943 NARSO43776 548 aaKnown RBP8.44□□□□□ -1.06
USP40-216ENST00000485943 FBXO21O94952 628 aa8.44□□□□□ -1.06
USP40-216ENST00000485943 VNN2O95498 520 aa8.44□□□□□ -1.06
USP40-216ENST00000485943 ZBED1O96006 694 aa8.44□□□□□ -1.06
USP40-216ENST00000485943 F11P03951 625 aa8.44□□□□□ -1.06
USP40-216ENST00000485943 CYBBP04839 570 aa8.44□□□□□ -1.06
USP40-216ENST00000485943 HMBSP08397 361 aa8.44□□□□□ -1.06
USP40-216ENST00000485943 RARGP13631 454 aa8.44□□□□□ -1.06
USP40-216ENST00000485943 HMGA1P17096 107 aaKnown RBP8.44□□□□□ -1.06
USP40-216ENST00000485943 UBASH3AP57075 661 aa8.44□□□□□ -1.06
USP40-216ENST00000485943 POLR2FP61218 127 aaKnown RBP8.44□□□□□ -1.06
USP40-216ENST00000485943 YWHAGP61981 247 aaKnown RBP eCLIP8.44□□□□□ -1.06
USP40-216ENST00000485943 ARID5AQ03989 594 aa8.44□□□□□ -1.06
USP40-216ENST00000485943 ADIGQ0VDE8 80 aa8.44□□□□□ -1.06
USP40-216ENST00000485943 LRRC32Q14392 662 aa8.44□□□□□ -1.06
USP40-216ENST00000485943 DRAP1Q14919 205 aaPredicted RBP8.44□□□□□ -1.06
USP40-216ENST00000485943 PDGFRLQ15198 375 aa8.44□□□□□ -1.06
USP40-216ENST00000485943 NFKBIBQ15653 356 aa8.44□□□□□ -1.06
USP40-216ENST00000485943 CNGA2Q16280 664 aa8.44□□□□□ -1.06
USP40-216ENST00000485943 ITPRIPL2Q3MIP1 535 aa8.44□□□□□ -1.06
USP40-216ENST00000485943 SLC44A4Q53GD3 710 aa8.44□□□□□ -1.06
USP40-216ENST00000485943 ARHGAP17Q68EM7 881 aa8.44□□□□□ -1.06
USP40-216ENST00000485943 PHLDB3Q6NSJ2 640 aa8.44□□□□□ -1.06
USP40-216ENST00000485943 PIGZQ86VD9 579 aa8.44□□□□□ -1.06
USP40-216ENST00000485943 VPS36Q86VN1 386 aa8.44□□□□□ -1.06
USP40-216ENST00000485943 FBXL6Q8N531 539 aa8.44□□□□□ -1.06
USP40-216ENST00000485943 CCDC26Q8TAB7 109 aa8.44□□□□□ -1.06
USP40-216ENST00000485943 TTC8Q8TAM2 541 aa8.44□□□□□ -1.06
USP40-216ENST00000485943 SH3RF2Q8TEC5 729 aa8.44□□□□□ -1.06
USP40-216ENST00000485943 FAM3CQ92520 227 aa8.44□□□□□ -1.06
USP40-216ENST00000485943 SECISBP2LQ93073 1101 aaKnown RBP8.44□□□□□ -1.06
USP40-216ENST00000485943 MSANTD3Q96H12 275 aa8.44□□□□□ -1.06
USP40-216ENST00000485943 ZSWIM3Q96MP5 696 aa8.44□□□□□ -1.06
USP40-216ENST00000485943 MED15Q96RN5 788 aa8.44□□□□□ -1.06
USP40-216ENST00000485943 NELL2Q99435 816 aa8.44□□□□□ -1.06
USP40-216ENST00000485943 PKMYT1Q99640 499 aa8.44□□□□□ -1.06
USP40-216ENST00000485943 PRRX2Q99811 253 aa8.44□□□□□ -1.06
USP40-216ENST00000485943 SMOQ99835 787 aa8.44□□□□□ -1.06
USP40-216ENST00000485943 SLC46A2Q9BY10 475 aa8.44□□□□□ -1.06
USP40-216ENST00000485943 TBC1D17Q9HA65 648 aa8.44□□□□□ -1.06
USP40-216ENST00000485943 CFAP97Q9P2B7 532 aa8.44□□□□□ -1.06
USP40-216ENST00000485943 DNMT3LQ9UJW3 386 aa8.44□□□□□ -1.06
USP40-216ENST00000485943 SIT1Q9Y3P8 196 aa8.44□□□□□ -1.06
USP40-216ENST00000485943 PIAS3Q9Y6X2 628 aa8.44□□□□□ -1.06
USP40-216ENST00000485943 C5orf42Q9H799 3197 aa8.44□□□□□ -1.06
USP40-216ENST00000485943 XIRP2A4UGR9 3374 aa8.44□□□□□ -1.06
USP40-216ENST00000485943 DENND4CQ5VZ89 1909 aa8.43□□□□□ -1.06
USP40-216ENST00000485943 A0A1W2PQH9 124 aa8.43□□□□□ -1.06
USP40-216ENST00000485943 ANKRD62A6NC57 917 aa8.43□□□□□ -1.06
USP40-216ENST00000485943 ZNF840PA6NDX5 716 aa8.43□□□□□ -1.06
USP40-216ENST00000485943 LGALS16A8MUM7 142 aa8.43□□□□□ -1.06
USP40-216ENST00000485943 ANHXE9PGG2 379 aa8.43□□□□□ -1.06
USP40-216ENST00000485943 PIK3R2O00459 728 aa8.43□□□□□ -1.06
USP40-216ENST00000485943 GFPT2O94808 682 aa8.43□□□□□ -1.06
USP40-216ENST00000485943 ADH1CP00326 375 aa8.43□□□□□ -1.06
USP40-216ENST00000485943 UCHL3P15374 230 aa8.43□□□□□ -1.06
Retrieved 100 of 20,778 RNA–protein pairs in 17.8 ms