RNA–Protein interactions for RNA: ENST00000482879.5

SDC1-206, Transcript of syndecan 1, humanhuman

TSL 4

Gene SDC1, Length 558 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC1-206ENST00000482879 ABCC13Q9NSE7 274 aa12.82□□□□□ -0.36
SDC1-206ENST00000482879 OSER1Q9NX31 292 aa12.82□□□□□ -0.36
SDC1-206ENST00000482879 CTTNBP2NLQ9P2B4 639 aa12.82□□□□□ -0.36
SDC1-206ENST00000482879 CD207Q9UJ71 328 aa12.82□□□□□ -0.36
SDC1-206ENST00000482879 TMEM59LQ9UK28 342 aa12.82□□□□□ -0.36
SDC1-206ENST00000482879 TFR2Q9UP52 801 aa12.82□□□□□ -0.36
SDC1-206ENST00000482879 SCINQ9Y6U3 715 aa12.82□□□□□ -0.36
SDC1-206ENST00000482879 DOCK8Q8NF50 2099 aa12.81□□□□□ -0.36
SDC1-206ENST00000482879 PPAN-P2RY11A0A0B4J1V8 794 aaPredicted RBP12.81□□□□□ -0.36
SDC1-206ENST00000482879 A0A1W2PRU2 124 aa12.81□□□□□ -0.36
SDC1-206ENST00000482879 RCCD1A6NED2 376 aa12.81□□□□□ -0.36
SDC1-206ENST00000482879 H3BQ06 376 aaPredicted RBP12.81□□□□□ -0.36
SDC1-206ENST00000482879 CAPN9O14815 690 aa12.81□□□□□ -0.36
SDC1-206ENST00000482879 TADA3O75528 432 aa12.81□□□□□ -0.36
SDC1-206ENST00000482879 DAB1O75553 588 aa12.81□□□□□ -0.36
SDC1-206ENST00000482879 FYNP06241 537 aa12.81□□□□□ -0.36
SDC1-206ENST00000482879 NCAM1P13591 858 aa12.81□□□□□ -0.36
SDC1-206ENST00000482879 RARGP13631 454 aa12.81□□□□□ -0.36
SDC1-206ENST00000482879 CCR2P41597 374 aa12.81□□□□□ -0.36
SDC1-206ENST00000482879 CYP4F8P98187 520 aa12.81□□□□□ -0.36
SDC1-206ENST00000482879 SLC5A9Q2M3M2 681 aa12.81□□□□□ -0.36
SDC1-206ENST00000482879 ARHGAP15Q53QZ3 475 aa12.81□□□□□ -0.36
SDC1-206ENST00000482879 PPP1R15BQ5SWA1 713 aa12.81□□□□□ -0.36
SDC1-206ENST00000482879 HECTD3Q5T447 861 aa12.81□□□□□ -0.36
SDC1-206ENST00000482879 SNX30Q5VWJ9 437 aa12.81□□□□□ -0.36
SDC1-206ENST00000482879 DEFB106AQ8N104 65 aa12.81□□□□□ -0.36
SDC1-206ENST00000482879 JOSD2Q8TAC2 188 aa12.81□□□□□ -0.36
SDC1-206ENST00000482879 SHKBP1Q8TBC3 707 aa12.81□□□□□ -0.36
SDC1-206ENST00000482879 SLC35G2Q8TBE7 412 aa12.81□□□□□ -0.36
SDC1-206ENST00000482879 RNF139Q8WU17 664 aa12.81□□□□□ -0.36
SDC1-206ENST00000482879 RIPOR3Q96MK2 946 aa12.81□□□□□ -0.36
SDC1-206ENST00000482879 MCEEQ96PE7 176 aa12.81□□□□□ -0.36
SDC1-206ENST00000482879 TRIM62Q9BVG3 475 aa12.81□□□□□ -0.36
SDC1-206ENST00000482879 LACRTQ9GZZ8 138 aa12.81□□□□□ -0.36
SDC1-206ENST00000482879 UBE2ZQ9H832 354 aaPredicted RBP12.81□□□□□ -0.36
SDC1-206ENST00000482879 POPDC2Q9HBU9 364 aa12.81□□□□□ -0.36
SDC1-206ENST00000482879 FASTKD2Q9NYY8 710 aaKnown RBP eCLIP12.81□□□□□ -0.36
SDC1-206ENST00000482879 CLIC5Q9NZA1 410 aa12.81□□□□□ -0.36
SDC1-206ENST00000482879 UVRAGQ9P2Y5 699 aa12.81□□□□□ -0.36
SDC1-206ENST00000482879 CDH22Q9UJ99 828 aa12.81□□□□□ -0.36
SDC1-206ENST00000482879 PYCARDQ9ULZ3 195 aa12.81□□□□□ -0.36
SDC1-206ENST00000482879 NAALADL1Q9UQQ1 740 aa12.81□□□□□ -0.36
SDC1-206ENST00000482879 PPP2R2CQ9Y2T4 447 aa12.81□□□□□ -0.36
SDC1-206ENST00000482879 MRPS23Q9Y3D9 190 aaKnown RBP12.81□□□□□ -0.36
SDC1-206ENST00000482879 A0A0U1RQJ8 604 aa12.8□□□□□ -0.36
SDC1-206ENST00000482879 NRG2O14511 850 aaPredicted RBP12.8□□□□□ -0.36
SDC1-206ENST00000482879 PJA2O43164 708 aa12.8□□□□□ -0.36
SDC1-206ENST00000482879 TLR5O60602 858 aa12.8□□□□□ -0.36
SDC1-206ENST00000482879 MOSPD3O75425 235 aa12.8□□□□□ -0.36
SDC1-206ENST00000482879 PDGFRAP16234 1089 aa12.8□□□□□ -0.36
SDC1-206ENST00000482879 KCNA5P22460 613 aa12.8□□□□□ -0.36
SDC1-206ENST00000482879 FSHRP23945 695 aa12.8□□□□□ -0.36
SDC1-206ENST00000482879 NOS2P35228 1153 aa12.8□□□□□ -0.36
SDC1-206ENST00000482879 RFC1P35251 1148 aaPredicted RBP12.8□□□□□ -0.36
SDC1-206ENST00000482879 FLT3P36888 993 aa12.8□□□□□ -0.36
SDC1-206ENST00000482879 MTHFRP42898 656 aa12.8□□□□□ -0.36
SDC1-206ENST00000482879 NOP2P46087 812 aaKnown RBP12.8□□□□□ -0.36
SDC1-206ENST00000482879 RPL7AP62424 266 aaKnown RBP12.8□□□□□ -0.36
SDC1-206ENST00000482879 KIF5AQ12840 1032 aa12.8□□□□□ -0.36
SDC1-206ENST00000482879 TEAD2Q15562 447 aa12.8□□□□□ -0.36
SDC1-206ENST00000482879 HS1BP3Q53T59 392 aa12.8□□□□□ -0.36
SDC1-206ENST00000482879 DCAF6Q58WW2 860 aa12.8□□□□□ -0.36
SDC1-206ENST00000482879 PRSS36Q5K4E3 855 aa12.8□□□□□ -0.36
SDC1-206ENST00000482879 SYPL2Q5VXT5 272 aa12.8□□□□□ -0.36
SDC1-206ENST00000482879 TXNDC8Q6A555 127 aa12.8□□□□□ -0.36
SDC1-206ENST00000482879 RSRC2Q7L4I2 434 aaKnown RBP12.8□□□□□ -0.36
SDC1-206ENST00000482879 BEND5Q7L4P6 421 aa12.8□□□□□ -0.36
SDC1-206ENST00000482879 ARCQ7LC44 396 aa12.8□□□□□ -0.36
SDC1-206ENST00000482879 RHOT2Q8IXI1 618 aa12.8□□□□□ -0.36
SDC1-206ENST00000482879 EMC1Q8N766 993 aa12.8□□□□□ -0.36
SDC1-206ENST00000482879 ITFG1Q8TB96 612 aa12.8□□□□□ -0.36
SDC1-206ENST00000482879 ZNF564Q8TBZ8 553 aaPredicted RBP12.8□□□□□ -0.36
SDC1-206ENST00000482879 RXFP2Q8WXD0 754 aa12.8□□□□□ -0.36
SDC1-206ENST00000482879 ATRIPQ8WXE1 791 aa12.8□□□□□ -0.36
SDC1-206ENST00000482879 RFFLQ8WZ73 363 aa12.8□□□□□ -0.36
SDC1-206ENST00000482879 HLA-CQ95604 372 aa12.8□□□□□ -0.36
SDC1-206ENST00000482879 SLC2A13Q96QE2 648 aa12.8□□□□□ -0.36
SDC1-206ENST00000482879 CDK5RAP1Q96SZ6 601 aaKnown RBP12.8□□□□□ -0.36
SDC1-206ENST00000482879 DDX23Q9BUQ8 820 aaKnown RBP12.8□□□□□ -0.36
SDC1-206ENST00000482879 CCSER2Q9H7U1 834 aa12.8□□□□□ -0.36
SDC1-206ENST00000482879 TRPC7Q9HCX4 862 aa12.8□□□□□ -0.36
SDC1-206ENST00000482879 WDR6Q9NNW5 1121 aaKnown RBP12.8□□□□□ -0.36
SDC1-206ENST00000482879 MTPAPQ9NVV4 582 aaKnown RBP eCLIP12.8□□□□□ -0.36
SDC1-206ENST00000482879 NUDT5Q9UKK9 219 aa12.8□□□□□ -0.36
SDC1-206ENST00000482879 A0A0A6YYK5 440 aaPredicted RBP12.79□□□□□ -0.36
SDC1-206ENST00000482879 C2orf78A6NCI8 922 aa12.79□□□□□ -0.36
SDC1-206ENST00000482879 TMEM191CA6NGB0 347 aa12.79□□□□□ -0.36
SDC1-206ENST00000482879 C2CD4BA6NLJ0 364 aa12.79□□□□□ -0.36
SDC1-206ENST00000482879 ZSCAN12O43309 604 aa12.79□□□□□ -0.36
SDC1-206ENST00000482879 TBX18O95935 607 aa12.79□□□□□ -0.36
SDC1-206ENST00000482879 CEBPBP17676 345 aa12.79□□□□□ -0.36
SDC1-206ENST00000482879 GPD1P21695 349 aa12.79□□□□□ -0.36
SDC1-206ENST00000482879 MATKP42679 507 aa12.79□□□□□ -0.36
SDC1-206ENST00000482879 TUBP50607 506 aa12.79□□□□□ -0.36
SDC1-206ENST00000482879 NAP1L1P55209 391 aaKnown RBP12.79□□□□□ -0.36
SDC1-206ENST00000482879 C10orf120Q5SQS8 335 aa12.79□□□□□ -0.36
SDC1-206ENST00000482879 GPR158Q5T848 1215 aa12.79□□□□□ -0.36
SDC1-206ENST00000482879 TRNP1Q6NT89 227 aa12.79□□□□□ -0.36
SDC1-206ENST00000482879 TADA2BQ86TJ2 420 aa12.79□□□□□ -0.36
SDC1-206ENST00000482879 ZNF276Q8N554 614 aa12.79□□□□□ -0.36
Retrieved 100 of 20,778 RNA–protein pairs in 26.4 ms