RNA–Protein interactions for RNA: ENST00000481019.5

PTPRF-213, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 3

Gene PTPRF, Length 459 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-213ENST00000481019 WDTC1Q8N5D0 677 aa12.86□□□□□ -0.35
PTPRF-213ENST00000481019 PRSS33Q8NF86 280 aa12.86□□□□□ -0.35
PTPRF-213ENST00000481019 ZNF606Q8WXB4 792 aa12.86□□□□□ -0.35
PTPRF-213ENST00000481019 NUP58Q9BVL2 599 aa12.86□□□□□ -0.35
PTPRF-213ENST00000481019 KLF16Q9BXK1 252 aaPredicted RBP12.86□□□□□ -0.35
PTPRF-213ENST00000481019 KIF9Q9HAQ2 790 aa12.86□□□□□ -0.35
PTPRF-213ENST00000481019 TRPV5Q9NQA5 729 aa12.86□□□□□ -0.35
PTPRF-213ENST00000481019 RTN4Q9NQC3 1192 aaKnown RBP12.86□□□□□ -0.35
PTPRF-213ENST00000481019 MTPAPQ9NVV4 582 aaKnown RBP eCLIP12.86□□□□□ -0.35
PTPRF-213ENST00000481019 HESX1Q9UBX0 185 aa12.86□□□□□ -0.35
PTPRF-213ENST00000481019 TJP2Q9UDY2 1190 aa12.86□□□□□ -0.35
PTPRF-213ENST00000481019 A0A1W2PQC6 194 aa12.85□□□□□ -0.35
PTPRF-213ENST00000481019 KANSL1LA0AUZ9 987 aa12.85□□□□□ -0.35
PTPRF-213ENST00000481019 YJEFN3A6XGL0 299 aa12.85□□□□□ -0.35
PTPRF-213ENST00000481019 E7ENQ6 273 aa12.85□□□□□ -0.35
PTPRF-213ENST00000481019 STK25O00506 426 aa12.85□□□□□ -0.35
PTPRF-213ENST00000481019 THAP12O43422 761 aa12.85□□□□□ -0.35
PTPRF-213ENST00000481019 ZBED1O96006 694 aa12.85□□□□□ -0.35
PTPRF-213ENST00000481019 SETSIPP0DME0 302 aa12.85□□□□□ -0.35
PTPRF-213ENST00000481019 IRF1P10914 325 aa12.85□□□□□ -0.35
PTPRF-213ENST00000481019 LCP1P13796 627 aa12.85□□□□□ -0.35
PTPRF-213ENST00000481019 UCHL3P15374 230 aa12.85□□□□□ -0.35
PTPRF-213ENST00000481019 PFKLP17858 780 aa12.85□□□□□ -0.35
PTPRF-213ENST00000481019 GNA15P30679 374 aa12.85□□□□□ -0.35
PTPRF-213ENST00000481019 TUBP50607 506 aa12.85□□□□□ -0.35
PTPRF-213ENST00000481019 CLCN5P51795 746 aa12.85□□□□□ -0.35
PTPRF-213ENST00000481019 UBXN1Q04323 297 aa12.85□□□□□ -0.35
PTPRF-213ENST00000481019 PRKCQQ04759 706 aa12.85□□□□□ -0.35
PTPRF-213ENST00000481019 RAPGEF1Q13905 1077 aa12.85□□□□□ -0.35
PTPRF-213ENST00000481019 SYCP1Q15431 976 aa12.85□□□□□ -0.35
PTPRF-213ENST00000481019 EML3Q32P44 896 aa12.85□□□□□ -0.35
PTPRF-213ENST00000481019 SPECC1LQ69YQ0 1117 aa12.85□□□□□ -0.35
PTPRF-213ENST00000481019 SUGP1Q8IWZ8 645 aaKnown RBP12.85□□□□□ -0.35
PTPRF-213ENST00000481019 PJA1Q8NG27 643 aa12.85□□□□□ -0.35
PTPRF-213ENST00000481019 OSCP1Q8WVF1 389 aa12.85□□□□□ -0.35
PTPRF-213ENST00000481019 KCTD13Q8WZ19 329 aa12.85□□□□□ -0.35
PTPRF-213ENST00000481019 P2RY11Q96G91 374 aa12.85□□□□□ -0.35
PTPRF-213ENST00000481019 DNAI2Q9GZS0 605 aa12.85□□□□□ -0.35
PTPRF-213ENST00000481019 LTB4R2Q9NPC1 389 aa12.85□□□□□ -0.35
PTPRF-213ENST00000481019 PLCB1Q9NQ66 1216 aa12.85□□□□□ -0.35
PTPRF-213ENST00000481019 CYLDQ9NQC7 956 aa12.85□□□□□ -0.35
PTPRF-213ENST00000481019 TLR8Q9NR97 1041 aaKnown RBP12.85□□□□□ -0.35
PTPRF-213ENST00000481019 FAM207AQ9NSI2 230 aaPredicted RBP12.85□□□□□ -0.35
PTPRF-213ENST00000481019 DUS2Q9NX74 493 aaKnown RBP12.85□□□□□ -0.35
PTPRF-213ENST00000481019 NAGPAQ9UK23 515 aa12.85□□□□□ -0.35
PTPRF-213ENST00000481019 FAM170BA6NMN3 283 aa12.84□□□□□ -0.35
PTPRF-213ENST00000481019 SPECC1L-ADORA2AF8WAN1 911 aa12.84□□□□□ -0.35
PTPRF-213ENST00000481019 RPL34P49207 117 aaKnown RBP12.84□□□□□ -0.35
PTPRF-213ENST00000481019 KPNA1P52294 538 aaPredicted RBP12.84□□□□□ -0.35
PTPRF-213ENST00000481019 DAOAP59103 153 aa12.84□□□□□ -0.35
PTPRF-213ENST00000481019 YWHAGP61981 247 aaKnown RBP eCLIP12.84□□□□□ -0.35
PTPRF-213ENST00000481019 RUNX3Q13761 415 aa12.84□□□□□ -0.35
PTPRF-213ENST00000481019 UBXN2BQ14CS0 331 aa12.84□□□□□ -0.35
PTPRF-213ENST00000481019 GAB4Q2WGN9 574 aa12.84□□□□□ -0.35
PTPRF-213ENST00000481019 PASD1Q8IV76 773 aa12.84□□□□□ -0.35
PTPRF-213ENST00000481019 CSGALNACT1Q8TDX6 532 aa12.84□□□□□ -0.35
PTPRF-213ENST00000481019 NAP1L5Q96NT1 182 aaPredicted RBP12.84□□□□□ -0.35
PTPRF-213ENST00000481019 FBRSL1Q9HCM7 1045 aaKnown RBP12.84□□□□□ -0.35
PTPRF-213ENST00000481019 THG1LQ9NWX6 298 aaKnown RBP12.84□□□□□ -0.35
PTPRF-213ENST00000481019 NDRG2Q9UN36 371 aaKnown RBP12.84□□□□□ -0.35
PTPRF-213ENST00000481019 MIA3Q5JRA6 1907 aa12.84□□□□□ -0.35
PTPRF-213ENST00000481019 VPS13AQ96RL7 3174 aa12.83□□□□□ -0.36
PTPRF-213ENST00000481019 ANTXRLA6NF34 631 aa12.83□□□□□ -0.36
PTPRF-213ENST00000481019 F8VZ95 297 aa12.83□□□□□ -0.36
PTPRF-213ENST00000481019 CTHP32929 405 aa12.83□□□□□ -0.36
PTPRF-213ENST00000481019 JAM2P57087 298 aa12.83□□□□□ -0.36
PTPRF-213ENST00000481019 POLR2FP61218 127 aaKnown RBP12.83□□□□□ -0.36
PTPRF-213ENST00000481019 MESP2Q0VG99 397 aa12.83□□□□□ -0.36
PTPRF-213ENST00000481019 TCF15Q12870 199 aa12.83□□□□□ -0.36
PTPRF-213ENST00000481019 STILQ15468 1287 aa12.83□□□□□ -0.36
PTPRF-213ENST00000481019 TSR1Q2NL82 804 aaKnown RBP12.83□□□□□ -0.36
PTPRF-213ENST00000481019 ITPRIPL2Q3MIP1 535 aa12.83□□□□□ -0.36
PTPRF-213ENST00000481019 C10orf120Q5SQS8 335 aa12.83□□□□□ -0.36
PTPRF-213ENST00000481019 VSTM4Q8IW00 320 aa12.83□□□□□ -0.36
PTPRF-213ENST00000481019 BBS7Q8IWZ6 715 aa12.83□□□□□ -0.36
PTPRF-213ENST00000481019 ZNF397Q8NF99 534 aaPredicted RBP12.83□□□□□ -0.36
PTPRF-213ENST00000481019 DDX1Q92499 740 aaKnown RBP12.83□□□□□ -0.36
PTPRF-213ENST00000481019 FAM3CQ92520 227 aa12.83□□□□□ -0.36
PTPRF-213ENST00000481019 EDEM1Q92611 657 aa12.83□□□□□ -0.36
PTPRF-213ENST00000481019 PIWIL1Q96J94 861 aaKnown RBP12.83□□□□□ -0.36
PTPRF-213ENST00000481019 SLC4A5Q9BY07 1137 aa12.83□□□□□ -0.36
PTPRF-213ENST00000481019 STK33Q9BYT3 514 aa12.83□□□□□ -0.36
PTPRF-213ENST00000481019 MIS12Q9H081 205 aa12.83□□□□□ -0.36
PTPRF-213ENST00000481019 ECT2Q9H8V3 914 aa12.83□□□□□ -0.36
PTPRF-213ENST00000481019 LRRC4Q9HBW1 653 aa12.83□□□□□ -0.36
PTPRF-213ENST00000481019 NLRC4Q9NPP4 1024 aa12.83□□□□□ -0.36
PTPRF-213ENST00000481019 RBM12Q9NTZ6 932 aaKnown RBP12.83□□□□□ -0.36
PTPRF-213ENST00000481019 CLIC5Q9NZA1 410 aa12.83□□□□□ -0.36
PTPRF-213ENST00000481019 SIT1Q9Y3P8 196 aa12.83□□□□□ -0.36
PTPRF-213ENST00000481019 DAAM1Q9Y4D1 1078 aa12.83□□□□□ -0.36
PTPRF-213ENST00000481019 MYOFQ9NZM1 2061 aa12.83□□□□□ -0.36
PTPRF-213ENST00000481019 ITIH6Q6UXX5 1313 aa12.83□□□□□ -0.36
PTPRF-213ENST00000481019 WDR87Q6ZQQ6 2873 aa12.82□□□□□ -0.36
PTPRF-213ENST00000481019 PAPSS1O43252 624 aaPredicted RBP12.82□□□□□ -0.36
PTPRF-213ENST00000481019 AP5Z1O43299 807 aa12.82□□□□□ -0.36
PTPRF-213ENST00000481019 KLKB1P03952 638 aa12.82□□□□□ -0.36
PTPRF-213ENST00000481019 CYP17A1P05093 508 aa12.82□□□□□ -0.36
PTPRF-213ENST00000481019 FYNP06241 537 aa12.82□□□□□ -0.36
PTPRF-213ENST00000481019 HMBSP08397 361 aa12.82□□□□□ -0.36
PTPRF-213ENST00000481019 HOXC13P31276 330 aa12.82□□□□□ -0.36
Retrieved 100 of 20,778 RNA–protein pairs in 34.4 ms