RNA–Protein interactions for RNA: ENST00000479656.5

APTX-223, Transcript of aprataxin, human

TSL 1 (best)

Gene APTX, Length 1,881 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
APTX-223	ENST00000479656	KRIT1	O00522	736 aa		11.71	□□□□□ -0.53
APTX-223	ENST00000479656	TEX28	O15482	410 aa		11.71	□□□□□ -0.53
APTX-223	ENST00000479656	PRPSAP2	O60256	369 aa		11.71	□□□□□ -0.53
APTX-223	ENST00000479656	CSPG5	O95196	566 aa		11.71	□□□□□ -0.53
APTX-223	ENST00000479656	KRT1	P04264	644 aa		11.71	□□□□□ -0.53
APTX-223	ENST00000479656	KRT7	P08729	469 aa		11.71	□□□□□ -0.53
APTX-223	ENST00000479656	ATF2	P15336	505 aa		11.71	□□□□□ -0.53
APTX-223	ENST00000479656	TUFM	P49411	452 aa	Known RBP	11.71	□□□□□ -0.53
APTX-223	ENST00000479656	ERVFC1	P60507	584 aa		11.71	□□□□□ -0.53
APTX-223	ENST00000479656	YWHAG	P61981	247 aa	Known RBP eCLIP	11.71	□□□□□ -0.53
APTX-223	ENST00000479656	RPL10A	P62906	217 aa	Known RBP	11.71	□□□□□ -0.53
APTX-223	ENST00000479656	MTMR3	Q13615	1198 aa		11.71	□□□□□ -0.53
APTX-223	ENST00000479656	SMC1A	Q14683	1233 aa	Known RBP	11.71	□□□□□ -0.53
APTX-223	ENST00000479656	ODF2	Q5BJF6	829 aa		11.71	□□□□□ -0.53
APTX-223	ENST00000479656	TPGS2	Q68CL5	300 aa		11.71	□□□□□ -0.53
APTX-223	ENST00000479656	DENND5B	Q6ZUT9	1274 aa		11.71	□□□□□ -0.53
APTX-223	ENST00000479656	CYP4V2	Q6ZWL3	525 aa	Predicted RBP	11.71	□□□□□ -0.53
APTX-223	ENST00000479656	TMC7	Q7Z402	723 aa		11.71	□□□□□ -0.53
APTX-223	ENST00000479656	SCD5	Q86SK9	330 aa		11.71	□□□□□ -0.53
APTX-223	ENST00000479656	SLC13A5	Q86YT5	568 aa	Predicted RBP	11.71	□□□□□ -0.53
APTX-223	ENST00000479656	ADAM32	Q8TC27	787 aa		11.71	□□□□□ -0.53
APTX-223	ENST00000479656	UBXN4	Q92575	508 aa		11.71	□□□□□ -0.53
APTX-223	ENST00000479656	HSPH1	Q92598	858 aa		11.71	□□□□□ -0.53
APTX-223	ENST00000479656	NT5C3B	Q969T7	300 aa		11.71	□□□□□ -0.53
APTX-223	ENST00000479656	SPATA17	Q96L03	361 aa		11.71	□□□□□ -0.53
APTX-223	ENST00000479656	PLVAP	Q9BX97	442 aa		11.71	□□□□□ -0.53
APTX-223	ENST00000479656	HEMGN	Q9BXL5	484 aa		11.71	□□□□□ -0.53
APTX-223	ENST00000479656	EPC1	Q9H2F5	836 aa		11.71	□□□□□ -0.53
APTX-223	ENST00000479656	CYP4F11	Q9HBI6	524 aa		11.71	□□□□□ -0.53
APTX-223	ENST00000479656	COX16	Q9P0S2	106 aa		11.71	□□□□□ -0.53
APTX-223	ENST00000479656	STK39	Q9UEW8	545 aa		11.71	□□□□□ -0.53
APTX-223	ENST00000479656	MTUS1	Q9ULD2	1270 aa		11.71	□□□□□ -0.53
APTX-223	ENST00000479656	STAP1	Q9ULZ2	295 aa		11.71	□□□□□ -0.53
APTX-223	ENST00000479656	NR2E1	Q9Y466	385 aa		11.71	□□□□□ -0.53
APTX-223	ENST00000479656		A0A1W2PQH9	124 aa		11.7	□□□□□ -0.54
APTX-223	ENST00000479656	TCRBV7S2A1N4T	A0A589	114 aa		11.7	□□□□□ -0.54
APTX-223	ENST00000479656	ENDOD1	O94919	500 aa		11.7	□□□□□ -0.54
APTX-223	ENST00000479656	CNP	P09543	421 aa	Known RBP	11.7	□□□□□ -0.54
APTX-223	ENST00000479656	ATF6	P18850	670 aa		11.7	□□□□□ -0.54
APTX-223	ENST00000479656	NME3	Q13232	169 aa		11.7	□□□□□ -0.54
APTX-223	ENST00000479656	OTUD1	Q5VV17	481 aa	Predicted RBP	11.7	□□□□□ -0.54
APTX-223	ENST00000479656	BTBD8	Q5XKL5	378 aa		11.7	□□□□□ -0.54
APTX-223	ENST00000479656	MFSD7	Q6UXD7	560 aa		11.7	□□□□□ -0.54
APTX-223	ENST00000479656	STRADA	Q7RTN6	431 aa		11.7	□□□□□ -0.54
APTX-223	ENST00000479656	GPR65	Q8IYL9	337 aa		11.7	□□□□□ -0.54
APTX-223	ENST00000479656	ZDHHC14	Q8IZN3	488 aa		11.7	□□□□□ -0.54
APTX-223	ENST00000479656	KCTD6	Q8NC69	237 aa		11.7	□□□□□ -0.54
APTX-223	ENST00000479656	CMAS	Q8NFW8	434 aa	Predicted RBP	11.7	□□□□□ -0.54
APTX-223	ENST00000479656	SLC7A14	Q8TBB6	771 aa		11.7	□□□□□ -0.54
APTX-223	ENST00000479656	SLITRK1	Q96PX8	696 aa		11.7	□□□□□ -0.54
APTX-223	ENST00000479656	NCAPG	Q9BPX3	1015 aa		11.7	□□□□□ -0.54
APTX-223	ENST00000479656	HERPUD2	Q9BSE4	406 aa		11.7	□□□□□ -0.54
APTX-223	ENST00000479656	FBXO44	Q9H4M3	255 aa		11.7	□□□□□ -0.54
APTX-223	ENST00000479656	NMUR1	Q9HB89	426 aa		11.7	□□□□□ -0.54
APTX-223	ENST00000479656	RXFP1	Q9HBX9	757 aa		11.7	□□□□□ -0.54
APTX-223	ENST00000479656	APOBEC3C	Q9NRW3	190 aa	Known RBP eCLIP	11.7	□□□□□ -0.54
APTX-223	ENST00000479656	IL37	Q9NZH6	218 aa		11.7	□□□□□ -0.54
APTX-223	ENST00000479656	FNIP2	Q9P278	1114 aa		11.7	□□□□□ -0.54
APTX-223	ENST00000479656	SCML2	Q9UQR0	700 aa		11.7	□□□□□ -0.54
APTX-223	ENST00000479656	SSX2IP	Q9Y2D8	614 aa		11.7	□□□□□ -0.54
APTX-223	ENST00000479656	LRRD1	A4D1F6	860 aa		11.7	□□□□□ -0.54
APTX-223	ENST00000479656	SLC38A8	A6NNN8	435 aa		11.7	□□□□□ -0.54
APTX-223	ENST00000479656	FSCN2	O14926	492 aa		11.7	□□□□□ -0.54
APTX-223	ENST00000479656	RTN3	O95197	1032 aa	Predicted RBP	11.7	□□□□□ -0.54
APTX-223	ENST00000479656	SPATA31D3	P0C874	917 aa		11.7	□□□□□ -0.54
APTX-223	ENST00000479656	RALA	P11233	206 aa		11.7	□□□□□ -0.54
APTX-223	ENST00000479656	KRT10	P13645	584 aa		11.7	□□□□□ -0.54
APTX-223	ENST00000479656	KDELR1	P24390	212 aa		11.7	□□□□□ -0.54
APTX-223	ENST00000479656	DNAJB1	P25685	340 aa		11.7	□□□□□ -0.54
APTX-223	ENST00000479656	YWHAQ	P27348	245 aa		11.7	□□□□□ -0.54
APTX-223	ENST00000479656	DEUP1	Q05D60	604 aa		11.7	□□□□□ -0.54
APTX-223	ENST00000479656	ITIH3	Q06033	890 aa		11.7	□□□□□ -0.54
APTX-223	ENST00000479656	BOLA3	Q53S33	107 aa		11.7	□□□□□ -0.54
APTX-223	ENST00000479656	ZC3H12A	Q5D1E8	599 aa	Known RBP	11.7	□□□□□ -0.54
APTX-223	ENST00000479656	KAZN	Q674X7	775 aa		11.7	□□□□□ -0.54
APTX-223	ENST00000479656	SPATA31D4	Q6ZUB0	917 aa		11.7	□□□□□ -0.54
APTX-223	ENST00000479656	BNIPL	Q7Z465	357 aa		11.7	□□□□□ -0.54
APTX-223	ENST00000479656	MON1A	Q86VX9	555 aa		11.7	□□□□□ -0.54
APTX-223	ENST00000479656	FAM131B	Q86XD5	332 aa		11.7	□□□□□ -0.54
APTX-223	ENST00000479656	SPPL3	Q8TCT6	385 aa		11.7	□□□□□ -0.54
APTX-223	ENST00000479656	POF1B	Q8WVV4	589 aa		11.7	□□□□□ -0.54
APTX-223	ENST00000479656	RBM41	Q96IZ5	413 aa	Known RBP	11.7	□□□□□ -0.54
APTX-223	ENST00000479656	NAP1L3	Q99457	506 aa	Predicted RBP	11.7	□□□□□ -0.54
APTX-223	ENST00000479656	TCF25	Q9BQ70	676 aa		11.7	□□□□□ -0.54
APTX-223	ENST00000479656	MAGEB5	Q9BZ81	275 aa		11.7	□□□□□ -0.54
APTX-223	ENST00000479656	OSBPL8	Q9BZF1	889 aa		11.7	□□□□□ -0.54
APTX-223	ENST00000479656	ABCC13	Q9NSE7	274 aa		11.7	□□□□□ -0.54
APTX-223	ENST00000479656	GPATCH2L	Q9NWQ4	482 aa		11.7	□□□□□ -0.54
APTX-223	ENST00000479656	OSER1	Q9NX31	292 aa		11.7	□□□□□ -0.54
APTX-223	ENST00000479656	MAGED2	Q9UNF1	606 aa	Predicted RBP	11.7	□□□□□ -0.54
APTX-223	ENST00000479656	ZC3H11B	A0A1B0GUI2	810 aa	Predicted RBP	11.69	□□□□□ -0.54
APTX-223	ENST00000479656	C3orf70	A6NLC5	250 aa	Predicted RBP	11.69	□□□□□ -0.54
APTX-223	ENST00000479656	CA3	P07451	260 aa		11.69	□□□□□ -0.54
APTX-223	ENST00000479656	CD48	P09326	243 aa		11.69	□□□□□ -0.54
APTX-223	ENST00000479656	ELF1	P32519	619 aa		11.69	□□□□□ -0.54
APTX-223	ENST00000479656	CETN2	P41208	172 aa		11.69	□□□□□ -0.54
APTX-223	ENST00000479656	MRPS25	P82663	173 aa	Known RBP	11.69	□□□□□ -0.54
APTX-223	ENST00000479656	TAF10	Q12962	218 aa		11.69	□□□□□ -0.54
APTX-223	ENST00000479656	CLUL1	Q15846	466 aa		11.69	□□□□□ -0.54
APTX-223	ENST00000479656	CA9	Q16790	459 aa		11.69	□□□□□ -0.54

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