RNA–Protein interactions for RNA: ENST00000478840.1

UPF3B-203, Transcript of UPF3B, regulator of nonsense mediated mRNA decay, humanhuman

TSL 3

Gene UPF3B, Length 748 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3B-203ENST00000478840 CENPIQ92674 756 aaPredicted RBP5.83□□□□□ -1.48
UPF3B-203ENST00000478840 NACC2Q96BF6 587 aa5.83□□□□□ -1.48
UPF3B-203ENST00000478840 RSPRY1Q96DX4 576 aa5.83□□□□□ -1.48
UPF3B-203ENST00000478840 RRP36Q96EU6 259 aaKnown RBP5.83□□□□□ -1.48
UPF3B-203ENST00000478840 FAM89AQ96GI7 184 aa5.83□□□□□ -1.48
UPF3B-203ENST00000478840 C17orf80Q9BSJ5 609 aa5.83□□□□□ -1.48
UPF3B-203ENST00000478840 BRD8Q9H0E9 1235 aa5.83□□□□□ -1.48
UPF3B-203ENST00000478840 CHODLQ9H9P2 273 aa5.83□□□□□ -1.48
UPF3B-203ENST00000478840 KCNK9Q9NPC2 374 aa5.83□□□□□ -1.48
UPF3B-203ENST00000478840 LIN7CQ9NUP9 197 aaKnown RBP5.83□□□□□ -1.48
UPF3B-203ENST00000478840 EIF2B4Q9UI10 523 aaKnown RBP5.83□□□□□ -1.48
UPF3B-203ENST00000478840 DNAJC16Q9Y2G8 782 aa5.83□□□□□ -1.48
UPF3B-203ENST00000478840 ZBTB1Q9Y2K1 713 aa5.83□□□□□ -1.48
UPF3B-203ENST00000478840 RRP7AQ9Y3A4 280 aaKnown RBP5.83□□□□□ -1.48
UPF3B-203ENST00000478840 LOC105369274A0A096LPK9 316 aa5.82□□□□□ -1.48
UPF3B-203ENST00000478840 LOC102723532A0A0G2JNH3 316 aa5.82□□□□□ -1.48
UPF3B-203ENST00000478840 CTIFO43310 598 aaKnown RBP5.82□□□□□ -1.48
UPF3B-203ENST00000478840 RECQL4O94761 1208 aa5.82□□□□□ -1.48
UPF3B-203ENST00000478840 LMNAP02545 664 aaKnown RBP5.82□□□□□ -1.48
UPF3B-203ENST00000478840 CYP21A2P08686 494 aa5.82□□□□□ -1.48
UPF3B-203ENST00000478840 CD19P15391 556 aa5.82□□□□□ -1.48
UPF3B-203ENST00000478840 CNR2P34972 360 aa5.82□□□□□ -1.48
UPF3B-203ENST00000478840 SF3A3Q12874 501 aaKnown RBP eCLIP5.82□□□□□ -1.48
UPF3B-203ENST00000478840 PDE1CQ14123 709 aaPredicted RBP5.82□□□□□ -1.48
UPF3B-203ENST00000478840 DEPDC1Q5TB30 811 aa5.82□□□□□ -1.48
UPF3B-203ENST00000478840 FAM90A2PQ658T7 463 aa5.82□□□□□ -1.48
UPF3B-203ENST00000478840 ATG16L1Q676U5 607 aa5.82□□□□□ -1.48
UPF3B-203ENST00000478840 ARMC6Q6NXE6 501 aa5.82□□□□□ -1.48
UPF3B-203ENST00000478840 CLEC9AQ6UXN8 241 aa5.82□□□□□ -1.48
UPF3B-203ENST00000478840 NEK10Q6ZWH5 1172 aa5.82□□□□□ -1.48
UPF3B-203ENST00000478840 SYT13Q7L8C5 426 aa5.82□□□□□ -1.48
UPF3B-203ENST00000478840 CIR1Q86X95 450 aaPredicted RBP5.82□□□□□ -1.48
UPF3B-203ENST00000478840 OR4N4Q8N0Y3 316 aa5.82□□□□□ -1.48
UPF3B-203ENST00000478840 ZNF808Q8N4W9 903 aaPredicted RBP5.82□□□□□ -1.48
UPF3B-203ENST00000478840 SYT8Q8NBV8 401 aa5.82□□□□□ -1.48
UPF3B-203ENST00000478840 ADAMTS18Q8TE60 1221 aa5.82□□□□□ -1.48
UPF3B-203ENST00000478840 ATRIPQ8WXE1 791 aa5.82□□□□□ -1.48
UPF3B-203ENST00000478840 ST8SIA4Q92187 359 aa5.82□□□□□ -1.48
UPF3B-203ENST00000478840 KTI12Q96EK9 354 aaPredicted RBP5.82□□□□□ -1.48
UPF3B-203ENST00000478840 C7orf26Q96N11 449 aa5.82□□□□□ -1.48
UPF3B-203ENST00000478840 HAPLN3Q96S86 360 aa5.82□□□□□ -1.48
UPF3B-203ENST00000478840 TEX101Q9BY14 249 aa5.82□□□□□ -1.48
UPF3B-203ENST00000478840 INTS13Q9NVM9 706 aa5.82□□□□□ -1.48
UPF3B-203ENST00000478840 STEAP1Q9UHE8 339 aa5.82□□□□□ -1.48
UPF3B-203ENST00000478840 KCND3Q9UK17 655 aa5.82□□□□□ -1.48
UPF3B-203ENST00000478840 TBX20Q9UMR3 447 aa5.82□□□□□ -1.48
UPF3B-203ENST00000478840 AFG3L2Q9Y4W6 797 aa5.82□□□□□ -1.48
UPF3B-203ENST00000478840 ADAMTS20P59510 1910 aa5.82□□□□□ -1.48
UPF3B-203ENST00000478840 SLC38A8A6NNN8 435 aa5.81□□□□□ -1.48
UPF3B-203ENST00000478840 A8MVJ9 347 aa5.81□□□□□ -1.48
UPF3B-203ENST00000478840 KIF28PB7ZC32 967 aa5.81□□□□□ -1.48
UPF3B-203ENST00000478840 TIMM44O43615 452 aa5.81□□□□□ -1.48
UPF3B-203ENST00000478840 KRT38O76015 456 aa5.81□□□□□ -1.48
UPF3B-203ENST00000478840 TMEM63AO94886 807 aa5.81□□□□□ -1.48
UPF3B-203ENST00000478840 WDR47O94967 919 aa5.81□□□□□ -1.48
UPF3B-203ENST00000478840 GATA3P23771 443 aa5.81□□□□□ -1.48
UPF3B-203ENST00000478840 VAV2P52735 878 aa5.81□□□□□ -1.48
UPF3B-203ENST00000478840 PRKG2Q13237 762 aa5.81□□□□□ -1.48
UPF3B-203ENST00000478840 DCTN1Q14203 1278 aa5.81□□□□□ -1.48
UPF3B-203ENST00000478840 KCNJ12Q14500 433 aa5.81□□□□□ -1.48
UPF3B-203ENST00000478840 GEN1Q17RS7 908 aa5.81□□□□□ -1.48
UPF3B-203ENST00000478840 GPATCH4Q5T3I0 446 aaKnown RBP5.81□□□□□ -1.48
UPF3B-203ENST00000478840 NAA35Q5VZE5 725 aa5.81□□□□□ -1.48
UPF3B-203ENST00000478840 SLC9A4Q6AI14 798 aa5.81□□□□□ -1.48
UPF3B-203ENST00000478840 FSTL5Q8N475 847 aaPredicted RBP5.81□□□□□ -1.48
UPF3B-203ENST00000478840 METTL25Q8N6Q8 603 aa5.81□□□□□ -1.48
UPF3B-203ENST00000478840 HMGB4Q8WW32 186 aa5.81□□□□□ -1.48
UPF3B-203ENST00000478840 EDAQ92838 391 aa5.81□□□□□ -1.48
UPF3B-203ENST00000478840 TMEM125Q96AQ2 219 aa5.81□□□□□ -1.48
UPF3B-203ENST00000478840 NEUROD6Q96NK8 337 aa5.81□□□□□ -1.48
UPF3B-203ENST00000478840 TREX2Q9BQ50 279 aaPredicted RBP5.81□□□□□ -1.48
UPF3B-203ENST00000478840 MECRQ9BV79 373 aa5.81□□□□□ -1.48
UPF3B-203ENST00000478840 PAIP1Q9H074 479 aaKnown RBP5.81□□□□□ -1.48
UPF3B-203ENST00000478840 SERHL2Q9H4I8 314 aa5.81□□□□□ -1.48
UPF3B-203ENST00000478840 GALNT9Q9HCQ5 603 aa5.81□□□□□ -1.48
UPF3B-203ENST00000478840 TRPM5Q9NZQ8 1165 aa5.81□□□□□ -1.48
UPF3B-203ENST00000478840 SORCS3Q9UPU3 1222 aa5.81□□□□□ -1.48
UPF3B-203ENST00000478840 DRG1Q9Y295 367 aaKnown RBP5.81□□□□□ -1.48
UPF3B-203ENST00000478840 ZNF536O15090 1300 aa5.8□□□□□ -1.48
UPF3B-203ENST00000478840 VWA3AA6NCI4 1184 aa5.8□□□□□ -1.48
UPF3B-203ENST00000478840 EXOC5O00471 708 aa5.8□□□□□ -1.48
UPF3B-203ENST00000478840 KIAA0355O15063 1070 aa5.8□□□□□ -1.48
UPF3B-203ENST00000478840 ZSCAN22P10073 491 aaPredicted RBP5.8□□□□□ -1.48
UPF3B-203ENST00000478840 PBX1P40424 430 aa5.8□□□□□ -1.48
UPF3B-203ENST00000478840 MTHFSP49914 203 aa5.8□□□□□ -1.48
UPF3B-203ENST00000478840 RBM5P52756 815 aaKnown RBP eCLIP5.8□□□□□ -1.48
UPF3B-203ENST00000478840 DCAF7P61962 342 aa5.8□□□□□ -1.48
UPF3B-203ENST00000478840 SP2Q02086 613 aa5.8□□□□□ -1.48
UPF3B-203ENST00000478840 PKN1Q16512 942 aa5.8□□□□□ -1.48
UPF3B-203ENST00000478840 BAK1Q16611 211 aa5.8□□□□□ -1.48
UPF3B-203ENST00000478840 ST3GAL2Q16842 350 aa5.8□□□□□ -1.48
UPF3B-203ENST00000478840 LY6KQ17RY6 165 aa5.8□□□□□ -1.48
UPF3B-203ENST00000478840 AASDHQ4L235 1098 aaPredicted RBP5.8□□□□□ -1.48
UPF3B-203ENST00000478840 TMEM196Q5HYL7 178 aa5.8□□□□□ -1.48
UPF3B-203ENST00000478840 WDR45BQ5MNZ6 344 aa5.8□□□□□ -1.48
UPF3B-203ENST00000478840 SLC9C2Q5TAH2 1124 aa5.8□□□□□ -1.48
UPF3B-203ENST00000478840 SPATA1Q5VX52 437 aa5.8□□□□□ -1.48
UPF3B-203ENST00000478840 ANO7Q6IWH7 933 aa5.8□□□□□ -1.48
UPF3B-203ENST00000478840 CCDC144NLQ6NUI1 221 aa5.8□□□□□ -1.48
UPF3B-203ENST00000478840 TCP11L2Q8N4U5 519 aa5.8□□□□□ -1.48
Retrieved 100 of 20,778 RNA–protein pairs in 29.2 ms