RNA–Protein interactions for RNA: ENST00000478279.5

APTX-222, Transcript of aprataxin, human

TSL 1 (best)

Gene APTX, Length 684 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
APTX-222	ENST00000478279	PTPN1	P18031	435 aa	Known RBP	11.24	□□□□□ -0.61
APTX-222	ENST00000478279	GNL1	P36915	607 aa	Predicted RBP	11.24	□□□□□ -0.61
APTX-222	ENST00000478279	ABCG1	P45844	678 aa		11.24	□□□□□ -0.61
APTX-222	ENST00000478279	CACNA2D1	P54289	1103 aa		11.24	□□□□□ -0.61
APTX-222	ENST00000478279	BNC1	Q01954	994 aa		11.24	□□□□□ -0.61
APTX-222	ENST00000478279	HLA-B	Q31612	363 aa		11.24	□□□□□ -0.61
APTX-222	ENST00000478279	L1TD1	Q5T7N2	865 aa	Known RBP	11.24	□□□□□ -0.61
APTX-222	ENST00000478279	SNX30	Q5VWJ9	437 aa		11.24	□□□□□ -0.61
APTX-222	ENST00000478279	CADM4	Q8NFZ8	388 aa		11.24	□□□□□ -0.61
APTX-222	ENST00000478279	RASSF8	Q8NHQ8	419 aa		11.24	□□□□□ -0.61
APTX-222	ENST00000478279	WBP2	Q969T9	261 aa		11.24	□□□□□ -0.61
APTX-222	ENST00000478279	XPO6	Q96QU8	1125 aa	Known RBP	11.24	□□□□□ -0.61
APTX-222	ENST00000478279	MMS19	Q96T76	1030 aa		11.24	□□□□□ -0.61
APTX-222	ENST00000478279	GPR174	Q9BXC1	333 aa		11.24	□□□□□ -0.61
APTX-222	ENST00000478279	ELOVL4	Q9GZR5	314 aa		11.24	□□□□□ -0.61
APTX-222	ENST00000478279	MIR1-1HG	Q9H1L0	117 aa		11.24	□□□□□ -0.61
APTX-222	ENST00000478279	MRPL44	Q9H9J2	332 aa	Known RBP	11.24	□□□□□ -0.61
APTX-222	ENST00000478279	ITM2C	Q9NQX7	267 aa		11.24	□□□□□ -0.61
APTX-222	ENST00000478279	TMEM30A	Q9NV96	361 aa		11.24	□□□□□ -0.61
APTX-222	ENST00000478279	SEL1L	Q9UBV2	794 aa		11.24	□□□□□ -0.61
APTX-222	ENST00000478279	CHORDC1	Q9UHD1	332 aa	Predicted RBP	11.24	□□□□□ -0.61
APTX-222	ENST00000478279	FNDC3A	Q9Y2H6	1198 aa	Known RBP	11.24	□□□□□ -0.61
APTX-222	ENST00000478279	RAD54B	Q9Y620	910 aa		11.24	□□□□□ -0.61
APTX-222	ENST00000478279	GOLGA8CP	A6NN73	597 aa		11.23	□□□□□ -0.61
APTX-222	ENST00000478279	WASH3P	C4AMC7	463 aa		11.23	□□□□□ -0.61
APTX-222	ENST00000478279		E9PAM4	449 aa		11.23	□□□□□ -0.61
APTX-222	ENST00000478279	BCAT2	O15382	392 aa	Predicted RBP	11.23	□□□□□ -0.61
APTX-222	ENST00000478279	CACNG3	O60359	315 aa		11.23	□□□□□ -0.61
APTX-222	ENST00000478279	TACC1	O75410	805 aa		11.23	□□□□□ -0.61
APTX-222	ENST00000478279	C1QL1	O75973	258 aa		11.23	□□□□□ -0.61
APTX-222	ENST00000478279	TNNC2	P02585	160 aa		11.23	□□□□□ -0.61
APTX-222	ENST00000478279	FAM163B	P0C2L3	166 aa		11.23	□□□□□ -0.61
APTX-222	ENST00000478279	TYR	P14679	529 aa		11.23	□□□□□ -0.61
APTX-222	ENST00000478279	TUB	P50607	506 aa		11.23	□□□□□ -0.61
APTX-222	ENST00000478279	SUZ12	Q15022	739 aa	Known RBP	11.23	□□□□□ -0.61
APTX-222	ENST00000478279	SURF1	Q15526	300 aa		11.23	□□□□□ -0.61
APTX-222	ENST00000478279	DUOXA2	Q1HG44	320 aa		11.23	□□□□□ -0.61
APTX-222	ENST00000478279	HTR3D	Q70Z44	454 aa		11.23	□□□□□ -0.61
APTX-222	ENST00000478279	DYM	Q7RTS9	669 aa		11.23	□□□□□ -0.61
APTX-222	ENST00000478279	SYCP3	Q8IZU3	236 aa		11.23	□□□□□ -0.61
APTX-222	ENST00000478279	LSM14A	Q8ND56	463 aa	Known RBP	11.23	□□□□□ -0.61
APTX-222	ENST00000478279	OR5B17	Q8NGF7	314 aa		11.23	□□□□□ -0.61
APTX-222	ENST00000478279	NOC3L	Q8WTT2	800 aa	Known RBP	11.23	□□□□□ -0.61
APTX-222	ENST00000478279	MRPL45	Q9BRJ2	306 aa	Known RBP	11.23	□□□□□ -0.61
APTX-222	ENST00000478279	CBWD1	Q9BRT8	395 aa		11.23	□□□□□ -0.61
APTX-222	ENST00000478279	ZNF518B	Q9C0D4	1074 aa		11.23	□□□□□ -0.61
APTX-222	ENST00000478279	SNX25	Q9H3E2	840 aa		11.23	□□□□□ -0.61
APTX-222	ENST00000478279	PCIF1	Q9H4Z3	704 aa		11.23	□□□□□ -0.61
APTX-222	ENST00000478279	CCSER2	Q9H7U1	834 aa		11.23	□□□□□ -0.61
APTX-222	ENST00000478279	MARK1	Q9P0L2	795 aa		11.23	□□□□□ -0.61
APTX-222	ENST00000478279	WDR35	Q9P2L0	1181 aa		11.23	□□□□□ -0.61
APTX-222	ENST00000478279	NME7	Q9Y5B8	376 aa		11.23	□□□□□ -0.61
APTX-222	ENST00000478279	PCDHB13	Q9Y5F0	798 aa		11.23	□□□□□ -0.61
APTX-222	ENST00000478279	MYO18B	Q8IUG5	2567 aa		11.23	□□□□□ -0.61
APTX-222	ENST00000478279	MGA	Q8IWI9	3026 aa		11.23	□□□□□ -0.61
APTX-222	ENST00000478279	FAM149A	A5PLN7	773 aa		11.22	□□□□□ -0.61
APTX-222	ENST00000478279	METTL12	A8MUP2	240 aa		11.22	□□□□□ -0.61
APTX-222	ENST00000478279	NEDD8-MDP1	E9PL57	170 aa		11.22	□□□□□ -0.61
APTX-222	ENST00000478279	ATXN7	O15265	892 aa	Predicted RBP	11.22	□□□□□ -0.61
APTX-222	ENST00000478279	GCNT3	O95395	438 aa		11.22	□□□□□ -0.61
APTX-222	ENST00000478279	SPTA1	P02549	2419 aa		11.22	□□□□□ -0.61
APTX-222	ENST00000478279	CISD3	P0C7P0	127 aa		11.22	□□□□□ -0.61
APTX-222	ENST00000478279	ZDHHC11B	P0C7U3	371 aa		11.22	□□□□□ -0.61
APTX-222	ENST00000478279	IRF1	P10914	325 aa		11.22	□□□□□ -0.61
APTX-222	ENST00000478279	GAP43	P17677	238 aa		11.22	□□□□□ -0.61
APTX-222	ENST00000478279	OXTR	P30559	389 aa		11.22	□□□□□ -0.61
APTX-222	ENST00000478279	LONP1	P36776	959 aa	Known RBP	11.22	□□□□□ -0.61
APTX-222	ENST00000478279	PTPRJ	Q12913	1337 aa		11.22	□□□□□ -0.61
APTX-222	ENST00000478279	STARD3	Q14849	445 aa		11.22	□□□□□ -0.61
APTX-222	ENST00000478279	SMAD1	Q15797	465 aa	Known RBP	11.22	□□□□□ -0.61
APTX-222	ENST00000478279	DCAF12L1	Q5VU92	463 aa		11.22	□□□□□ -0.61
APTX-222	ENST00000478279	GPD1L	Q8N335	351 aa		11.22	□□□□□ -0.61
APTX-222	ENST00000478279	OR6B3	Q8NGW1	331 aa		11.22	□□□□□ -0.61
APTX-222	ENST00000478279	PIP4K2C	Q8TBX8	421 aa		11.22	□□□□□ -0.61
APTX-222	ENST00000478279	DCBLD2	Q96PD2	775 aa		11.22	□□□□□ -0.61
APTX-222	ENST00000478279	BBS2	Q9BXC9	721 aa		11.22	□□□□□ -0.61
APTX-222	ENST00000478279	B3GNT5	Q9BYG0	378 aa		11.22	□□□□□ -0.61
APTX-222	ENST00000478279	IL37	Q9NZH6	218 aa		11.22	□□□□□ -0.61
APTX-222	ENST00000478279	TBC1D7	Q9P0N9	293 aa		11.22	□□□□□ -0.61
APTX-222	ENST00000478279	USP36	Q9P275	1121 aa	Known RBP	11.22	□□□□□ -0.61
APTX-222	ENST00000478279	WDR3	Q9UNX4	943 aa	Known RBP eCLIP	11.22	□□□□□ -0.61
APTX-222	ENST00000478279	BTBD3	Q9Y2F9	522 aa		11.22	□□□□□ -0.61
APTX-222	ENST00000478279	KIF3A	Q9Y496	699 aa		11.22	□□□□□ -0.61
APTX-222	ENST00000478279	ATM	Q13315	3056 aa		11.21	□□□□□ -0.61
APTX-222	ENST00000478279	FAM92A	A1XBS5	289 aa		11.21	□□□□□ -0.61
APTX-222	ENST00000478279	KCNJ18	B7U540	433 aa		11.21	□□□□□ -0.61
APTX-222	ENST00000478279	CLDN5	O00501	218 aa		11.21	□□□□□ -0.61
APTX-222	ENST00000478279	TNFSF14	O43557	240 aa		11.21	□□□□□ -0.61
APTX-222	ENST00000478279	GREM1	O60565	184 aa		11.21	□□□□□ -0.61
APTX-222	ENST00000478279	EIF5B	O60841	1220 aa	Known RBP	11.21	□□□□□ -0.61
APTX-222	ENST00000478279	PLA2G2A	P14555	144 aa		11.21	□□□□□ -0.61
APTX-222	ENST00000478279	DGKG	P49619	791 aa		11.21	□□□□□ -0.61
APTX-222	ENST00000478279	ZNF132	P52740	706 aa		11.21	□□□□□ -0.61
APTX-222	ENST00000478279	GRIN1	Q05586	938 aa		11.21	□□□□□ -0.61
APTX-222	ENST00000478279	PTPRN	Q16849	979 aa		11.21	□□□□□ -0.61
APTX-222	ENST00000478279	FUT11	Q495W5	492 aa		11.21	□□□□□ -0.61
APTX-222	ENST00000478279	TRAPPC11	Q7Z392	1133 aa		11.21	□□□□□ -0.61
APTX-222	ENST00000478279	ZNF605	Q86T29	641 aa		11.21	□□□□□ -0.61
APTX-222	ENST00000478279	C1orf216	Q8TAB5	229 aa		11.21	□□□□□ -0.61
APTX-222	ENST00000478279	SCAMP5	Q8TAC9	235 aa		11.21	□□□□□ -0.61

Retrieved 100 of 20,778 RNA–protein pairs in 20.5 ms