RNA–Protein interactions for RNA: ENST00000477612.5

COL9A3-211, Transcript of collagen type IX alpha 3 chain, humanhuman

TSL 3

Gene COL9A3, Length 635 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A3-211ENST00000477612 CDK5RAP1Q96SZ6 601 aaKnown RBP22.88■■□□□ 1.25
COL9A3-211ENST00000477612 HESX1Q9UBX0 185 aa22.88■■□□□ 1.25
COL9A3-211ENST00000477612 DNMT3LQ9UJW3 386 aa22.88■■□□□ 1.25
COL9A3-211ENST00000477612 NAGPAQ9UK23 515 aa22.88■■□□□ 1.25
COL9A3-211ENST00000477612 CNTN6Q9UQ52 1028 aa22.88■■□□□ 1.25
COL9A3-211ENST00000477612 K7EQS6 105 aa22.87■■□□□ 1.25
COL9A3-211ENST00000477612 TULP2O00295 520 aa22.87■■□□□ 1.25
COL9A3-211ENST00000477612 SCAMP3O14828 347 aaKnown RBP22.87■■□□□ 1.25
COL9A3-211ENST00000477612 RALAP11233 206 aa22.87■■□□□ 1.25
COL9A3-211ENST00000477612 GAD2Q05329 585 aa22.87■■□□□ 1.25
COL9A3-211ENST00000477612 DMWDQ09019 674 aa22.87■■□□□ 1.25
COL9A3-211ENST00000477612 CNGA2Q16280 664 aa22.87■■□□□ 1.25
COL9A3-211ENST00000477612 GOLGA7BQ2TAP0 167 aa22.87■■□□□ 1.25
COL9A3-211ENST00000477612 LY6G5CQ5SRR4 150 aa22.87■■□□□ 1.25
COL9A3-211ENST00000477612 IRF2BP1Q8IU81 584 aa22.87■■□□□ 1.25
COL9A3-211ENST00000477612 ARHGEF19Q8IW93 802 aa22.87■■□□□ 1.25
COL9A3-211ENST00000477612 ARHGAP18Q8N392 663 aa22.87■■□□□ 1.25
COL9A3-211ENST00000477612 KCTD13Q8WZ19 329 aa22.87■■□□□ 1.25
COL9A3-211ENST00000477612 RUBCNQ92622 972 aa22.87■■□□□ 1.25
COL9A3-211ENST00000477612 SPHK2Q9NRA0 654 aa22.87■■□□□ 1.25
COL9A3-211ENST00000477612 LMBRD1Q9NUN5 540 aa22.87■■□□□ 1.25
COL9A3-211ENST00000477612 PCDHB4Q9Y5E5 795 aa22.87■■□□□ 1.25
COL9A3-211ENST00000477612 SPAG17Q6Q759 2223 aa22.87■■□□□ 1.25
COL9A3-211ENST00000477612 HOXC11O43248 304 aaPredicted RBP22.86■■□□□ 1.25
COL9A3-211ENST00000477612 SETSIPP0DME0 302 aa22.86■■□□□ 1.25
COL9A3-211ENST00000477612 ADH5P11766 374 aa22.86■■□□□ 1.25
COL9A3-211ENST00000477612 CD19P15391 556 aa22.86■■□□□ 1.25
COL9A3-211ENST00000477612 FNTBP49356 437 aa22.86■■□□□ 1.25
COL9A3-211ENST00000477612 ZNF132P52740 706 aa22.86■■□□□ 1.25
COL9A3-211ENST00000477612 GOLGA8FQ08AF8 430 aa22.86■■□□□ 1.25
COL9A3-211ENST00000477612 GOLGA8DPQ0D2H9 430 aa22.86■■□□□ 1.25
COL9A3-211ENST00000477612 STILQ15468 1287 aa22.86■■□□□ 1.25
COL9A3-211ENST00000477612 SYT13Q7L8C5 426 aa22.86■■□□□ 1.25
COL9A3-211ENST00000477612 BHLHA9Q7RTU4 235 aa22.86■■□□□ 1.25
COL9A3-211ENST00000477612 WDR5BQ86VZ2 330 aa22.86■■□□□ 1.25
COL9A3-211ENST00000477612 ETFBKMTQ8IXQ9 262 aa22.86■■□□□ 1.25
COL9A3-211ENST00000477612 SCML4Q8N228 414 aa22.86■■□□□ 1.25
COL9A3-211ENST00000477612 CAMKK1Q8N5S9 505 aa22.86■■□□□ 1.25
COL9A3-211ENST00000477612 TFAP2BQ92481 460 aa22.86■■□□□ 1.25
COL9A3-211ENST00000477612 PNKPQ96T60 521 aa22.86■■□□□ 1.25
COL9A3-211ENST00000477612 ZBED1O96006 694 aa22.85■■□□□ 1.25
COL9A3-211ENST00000477612 SLC6A11P48066 632 aa22.85■■□□□ 1.25
COL9A3-211ENST00000477612 TKTL1P51854 596 aa22.85■■□□□ 1.25
COL9A3-211ENST00000477612 SMYD5Q6GMV2 418 aa22.85■■□□□ 1.25
COL9A3-211ENST00000477612 Q6ZNB5 142 aa22.85■■□□□ 1.25
COL9A3-211ENST00000477612 RRAGAQ7L523 313 aa22.85■■□□□ 1.25
COL9A3-211ENST00000477612 C12orf40Q86WS4 652 aa22.85■■□□□ 1.25
COL9A3-211ENST00000477612 PHTF2Q8N3S3 785 aa22.85■■□□□ 1.25
COL9A3-211ENST00000477612 RPLP0P6Q8NHW5 317 aa22.85■■□□□ 1.25
COL9A3-211ENST00000477612 SLC35F5Q8WV83 523 aa22.85■■□□□ 1.25
COL9A3-211ENST00000477612 CNOT6LQ96LI5 555 aaKnown RBP22.85■■□□□ 1.25
COL9A3-211ENST00000477612 KREMEN1Q96MU8 473 aa22.85■■□□□ 1.25
COL9A3-211ENST00000477612 ZSWIM1Q9BR11 485 aa22.85■■□□□ 1.25
COL9A3-211ENST00000477612 LSM7Q9UK45 103 aaKnown RBP22.85■■□□□ 1.25
COL9A3-211ENST00000477612 NUDT5Q9UKK9 219 aa22.85■■□□□ 1.25
COL9A3-211ENST00000477612 GPR179Q6PRD1 2367 aa22.85■■□□□ 1.25
COL9A3-211ENST00000477612 PALM2-AKAP2B1ALY0 433 aaPredicted RBP22.84■■□□□ 1.25
COL9A3-211ENST00000477612 MDM4O15151 490 aa22.84■■□□□ 1.25
COL9A3-211ENST00000477612 HRO43593 1189 aa22.84■■□□□ 1.25
COL9A3-211ENST00000477612 IRF1P10914 325 aa22.84■■□□□ 1.25
COL9A3-211ENST00000477612 CHRM1P11229 460 aaPredicted RBP22.84■■□□□ 1.25
COL9A3-211ENST00000477612 HOXC13P31276 330 aa22.84■■□□□ 1.25
COL9A3-211ENST00000477612 C10orf120Q5SQS8 335 aa22.84■■□□□ 1.25
COL9A3-211ENST00000477612 UBA3Q8TBC4 463 aa22.84■■□□□ 1.25
COL9A3-211ENST00000477612 USP33Q8TEY7 942 aa22.84■■□□□ 1.25
COL9A3-211ENST00000477612 ACDQ96AP0 544 aa22.84■■□□□ 1.25
COL9A3-211ENST00000477612 ULBP1Q9BZM6 244 aa22.84■■□□□ 1.25
COL9A3-211ENST00000477612 INTS2Q9H0H0 1204 aaKnown RBP22.84■■□□□ 1.25
COL9A3-211ENST00000477612 NUP62CLQ9H1M0 184 aa22.84■■□□□ 1.25
COL9A3-211ENST00000477612 MARK1Q9P0L2 795 aa22.84■■□□□ 1.25
COL9A3-211ENST00000477612 WDR3Q9UNX4 943 aaKnown RBP eCLIP22.84■■□□□ 1.25
COL9A3-211ENST00000477612 SMG5Q9UPR3 1016 aaKnown RBP22.84■■□□□ 1.25
COL9A3-211ENST00000477612 SLC8A2Q9UPR5 921 aa22.84■■□□□ 1.25
COL9A3-211ENST00000477612 RALGAPA1Q6GYQ0 2036 aa22.84■■□□□ 1.25
COL9A3-211ENST00000477612 GTPBP10A4D1E9 387 aaKnown RBP22.83■■□□□ 1.25
COL9A3-211ENST00000477612 STC2O76061 302 aa22.83■■□□□ 1.25
COL9A3-211ENST00000477612 ERCC5P28715 1186 aaPredicted RBP22.83■■□□□ 1.25
COL9A3-211ENST00000477612 YWHAGP61981 247 aaKnown RBP eCLIP22.83■■□□□ 1.25
COL9A3-211ENST00000477612 MRPS21P82921 87 aaKnown RBP22.83■■□□□ 1.25
COL9A3-211ENST00000477612 COG7P83436 770 aa22.83■■□□□ 1.25
COL9A3-211ENST00000477612 TMEM25Q86YD3 366 aa22.83■■□□□ 1.25
COL9A3-211ENST00000477612 RBBP8NLQ8NC74 664 aaPredicted RBP22.83■■□□□ 1.25
COL9A3-211ENST00000477612 FAM81BQ96LP2 452 aa22.83■■□□□ 1.25
COL9A3-211ENST00000477612 LRRC4Q9HBW1 653 aa22.83■■□□□ 1.25
COL9A3-211ENST00000477612 CNGB3Q9NQW8 809 aa22.83■■□□□ 1.25
COL9A3-211ENST00000477612 KAT7O95251 611 aa22.82■■□□□ 1.24
COL9A3-211ENST00000477612 APODP05090 189 aa22.82■■□□□ 1.24
COL9A3-211ENST00000477612 GRIA2P42262 883 aa22.82■■□□□ 1.24
COL9A3-211ENST00000477612 TNFRSF4P43489 277 aa22.82■■□□□ 1.24
COL9A3-211ENST00000477612 MESP2Q0VG99 397 aa22.82■■□□□ 1.24
COL9A3-211ENST00000477612 PREPLQ4J6C6 727 aaPredicted RBP22.82■■□□□ 1.24
COL9A3-211ENST00000477612 CT47A1Q5JQC4 288 aaPredicted RBP22.82■■□□□ 1.24
COL9A3-211ENST00000477612 ENOSF1Q7L5Y1 443 aa22.82■■□□□ 1.24
COL9A3-211ENST00000477612 THAP9Q9H5L6 903 aa22.82■■□□□ 1.24
COL9A3-211ENST00000477612 ZNF510Q9Y2H8 683 aa22.82■■□□□ 1.24
COL9A3-211ENST00000477612 RPL34P49207 117 aaKnown RBP22.81■■□□□ 1.24
COL9A3-211ENST00000477612 ADIGQ0VDE8 80 aa22.81■■□□□ 1.24
COL9A3-211ENST00000477612 DMC1Q14565 340 aa22.81■■□□□ 1.24
COL9A3-211ENST00000477612 MEA1Q16626 185 aa22.81■■□□□ 1.24
COL9A3-211ENST00000477612 DPCR1Q3MIW9 517 aa22.81■■□□□ 1.24
Retrieved 100 of 20,778 RNA–protein pairs in 25.8 ms