RNA–Protein interactions for RNA: ENST00000477461.1

UBR3-209, Transcript of ubiquitin protein ligase E3 component n-recognin 3, humanhuman

TSL 4

Gene UBR3, Length 595 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UBR3-209ENST00000477461 NRACQ8N912 160 aa4.98□□□□□ -1.61
UBR3-209ENST00000477461 RUNDC1Q96C34 613 aa4.98□□□□□ -1.61
UBR3-209ENST00000477461 CCDC17Q96LX7 622 aa4.98□□□□□ -1.61
UBR3-209ENST00000477461 ZSCAN32Q9NX65 697 aa4.98□□□□□ -1.61
UBR3-209ENST00000477461 ASIC5Q9NY37 505 aa4.98□□□□□ -1.61
UBR3-209ENST00000477461 AMFRQ9UKV5 643 aa4.98□□□□□ -1.61
UBR3-209ENST00000477461 AFG3L2Q9Y4W6 797 aa4.98□□□□□ -1.61
UBR3-209ENST00000477461 DHX29Q7Z478 1369 aaKnown RBP4.98□□□□□ -1.61
UBR3-209ENST00000477461 RAB3GAP2Q9H2M9 1393 aa4.98□□□□□ -1.61
UBR3-209ENST00000477461 ATP10AO60312 1499 aa4.98□□□□□ -1.61
UBR3-209ENST00000477461 A2MP01023 1474 aa4.98□□□□□ -1.61
UBR3-209ENST00000477461 EIF2AK4Q9P2K8 1649 aaKnown RBP4.97□□□□□ -1.61
UBR3-209ENST00000477461 KANK1Q14678 1352 aa4.97□□□□□ -1.61
UBR3-209ENST00000477461 A0A087WWL8 130 aa4.97□□□□□ -1.61
UBR3-209ENST00000477461 GOLGA6CA6NDK9 693 aa4.97□□□□□ -1.61
UBR3-209ENST00000477461 GOLGA6BA6NDN3 693 aa4.97□□□□□ -1.61
UBR3-209ENST00000477461 PSMD9O00233 223 aa4.97□□□□□ -1.61
UBR3-209ENST00000477461 KIF3BO15066 747 aa4.97□□□□□ -1.61
UBR3-209ENST00000477461 USP1O94782 785 aa4.97□□□□□ -1.61
UBR3-209ENST00000477461 UBXN7O94888 489 aa4.97□□□□□ -1.61
UBR3-209ENST00000477461 GOLGA6DP0CG33 693 aa4.97□□□□□ -1.61
UBR3-209ENST00000477461 POLGP54098 1239 aaPredicted RBP4.97□□□□□ -1.61
UBR3-209ENST00000477461 SHC4Q6S5L8 630 aa4.97□□□□□ -1.61
UBR3-209ENST00000477461 ZDHHC24Q6UX98 284 aa4.97□□□□□ -1.61
UBR3-209ENST00000477461 GAS2L3Q86XJ1 694 aa4.97□□□□□ -1.61
UBR3-209ENST00000477461 DENND1CQ8IV53 801 aa4.97□□□□□ -1.61
UBR3-209ENST00000477461 MYO1HQ8N1T3 1032 aa4.97□□□□□ -1.61
UBR3-209ENST00000477461 OR6B3Q8NGW1 331 aa4.97□□□□□ -1.61
UBR3-209ENST00000477461 ADAMTS18Q8TE60 1221 aa4.97□□□□□ -1.61
UBR3-209ENST00000477461 TAAR9Q96RI9 348 aa4.97□□□□□ -1.61
UBR3-209ENST00000477461 ACO2Q99798 780 aaKnown RBP4.97□□□□□ -1.61
UBR3-209ENST00000477461 FAM118BQ9BPY3 351 aa4.97□□□□□ -1.61
UBR3-209ENST00000477461 TRIM54Q9BYV2 358 aa4.97□□□□□ -1.61
UBR3-209ENST00000477461 ZMAT3Q9HA38 289 aaKnown RBP4.97□□□□□ -1.61
UBR3-209ENST00000477461 GOLGA6AQ9NYA3 693 aa4.97□□□□□ -1.61
UBR3-209ENST00000477461 GABBR1Q9UBS5 961 aa4.97□□□□□ -1.61
UBR3-209ENST00000477461 TTC3P53804 2025 aa4.97□□□□□ -1.61
UBR3-209ENST00000477461 REREQ9P2R6 1566 aa4.96□□□□□ -1.62
UBR3-209ENST00000477461 TMEM232C9JQI7 657 aa4.96□□□□□ -1.62
UBR3-209ENST00000477461 E5RJQ4 531 aa4.96□□□□□ -1.62
UBR3-209ENST00000477461 DSCR3O14972 297 aa4.96□□□□□ -1.62
UBR3-209ENST00000477461 PMPCBO75439 489 aa4.96□□□□□ -1.62
UBR3-209ENST00000477461 PARNO95453 639 aaKnown RBP4.96□□□□□ -1.62
UBR3-209ENST00000477461 CHRM5P08912 532 aaPredicted RBP4.96□□□□□ -1.62
UBR3-209ENST00000477461 CYP19A1P11511 503 aaPredicted RBP4.96□□□□□ -1.62
UBR3-209ENST00000477461 MYCLP12524 364 aaPredicted RBP4.96□□□□□ -1.62
UBR3-209ENST00000477461 HOXD9P28356 352 aaPredicted RBP4.96□□□□□ -1.62
UBR3-209ENST00000477461 WNT3P56703 355 aa4.96□□□□□ -1.62
UBR3-209ENST00000477461 SLC13A2Q13183 592 aa4.96□□□□□ -1.62
UBR3-209ENST00000477461 GGT6Q6P531 493 aa4.96□□□□□ -1.62
UBR3-209ENST00000477461 MTHFD1LQ6UB35 978 aa4.96□□□□□ -1.62
UBR3-209ENST00000477461 IRF2BP2Q7Z5L9 587 aa4.96□□□□□ -1.62
UBR3-209ENST00000477461 KCTD20Q7Z5Y7 419 aa4.96□□□□□ -1.62
UBR3-209ENST00000477461 SPARTQ8N0X7 666 aa4.96□□□□□ -1.62
UBR3-209ENST00000477461 DNAJB14Q8TBM8 379 aa4.96□□□□□ -1.62
UBR3-209ENST00000477461 ZBTB45Q96K62 511 aaPredicted RBP4.96□□□□□ -1.62
UBR3-209ENST00000477461 ZC3H10Q96K80 434 aaKnown RBP4.96□□□□□ -1.62
UBR3-209ENST00000477461 NUP155O75694 1391 aa4.95□□□□□ -1.62
UBR3-209ENST00000477461 PRPF3O43395 683 aaKnown RBP4.95□□□□□ -1.62
UBR3-209ENST00000477461 SNHG28P0DPA3 235 aa4.95□□□□□ -1.62
UBR3-209ENST00000477461 PRKAR1BP31321 381 aa4.95□□□□□ -1.62
UBR3-209ENST00000477461 GKP32189 559 aa4.95□□□□□ -1.62
UBR3-209ENST00000477461 ARFIP2P53365 341 aa4.95□□□□□ -1.62
UBR3-209ENST00000477461 ITGA8P53708 1063 aa4.95□□□□□ -1.62
UBR3-209ENST00000477461 GHRHRQ02643 423 aa4.95□□□□□ -1.62
UBR3-209ENST00000477461 DCAF12L1Q5VU92 463 aa4.95□□□□□ -1.62
UBR3-209ENST00000477461 FMNL3Q8IVF7 1028 aa4.95□□□□□ -1.62
UBR3-209ENST00000477461 TMEM79Q9BSE2 394 aa4.95□□□□□ -1.62
UBR3-209ENST00000477461 C1orf112Q9NSG2 853 aa4.95□□□□□ -1.62
UBR3-209ENST00000477461 CHPF2Q9P2E5 772 aa4.95□□□□□ -1.62
UBR3-209ENST00000477461 DRG1Q9Y295 367 aaKnown RBP4.95□□□□□ -1.62
UBR3-209ENST00000477461 UNC13BO14795 1591 aa4.95□□□□□ -1.62
UBR3-209ENST00000477461 BCORL1Q5H9F3 1711 aa4.94□□□□□ -1.62
UBR3-209ENST00000477461 AGLP35573 1532 aa4.94□□□□□ -1.62
UBR3-209ENST00000477461 SOCS2O14508 198 aa4.94□□□□□ -1.62
UBR3-209ENST00000477461 KCNAB3O43448 404 aa4.94□□□□□ -1.62
UBR3-209ENST00000477461 RGS10O43665 173 aa4.94□□□□□ -1.62
UBR3-209ENST00000477461 RASAL1O95294 804 aa4.94□□□□□ -1.62
UBR3-209ENST00000477461 AGFG1P52594 562 aaKnown RBP4.94□□□□□ -1.62
UBR3-209ENST00000477461 FOXG1P55316 489 aaPredicted RBP4.94□□□□□ -1.62
UBR3-209ENST00000477461 ZNF91Q05481 1191 aa4.94□□□□□ -1.62
UBR3-209ENST00000477461 LMAN2Q12907 356 aa4.94□□□□□ -1.62
UBR3-209ENST00000477461 CCNIQ14094 377 aa4.94□□□□□ -1.62
UBR3-209ENST00000477461 GBX1Q14549 363 aa4.94□□□□□ -1.62
UBR3-209ENST00000477461 RBMS2Q15434 407 aaKnown RBP4.94□□□□□ -1.62
UBR3-209ENST00000477461 GFOD2Q3B7J2 385 aa4.94□□□□□ -1.62
UBR3-209ENST00000477461 CACHD1Q5VU97 1274 aa4.94□□□□□ -1.62
UBR3-209ENST00000477461 ZNF813Q6ZN06 617 aa4.94□□□□□ -1.62
UBR3-209ENST00000477461 ZBTB34Q8NCN2 500 aa4.94□□□□□ -1.62
UBR3-209ENST00000477461 KBTBD7Q8WVZ9 684 aa4.94□□□□□ -1.62
UBR3-209ENST00000477461 TSR2Q969E8 191 aaKnown RBP4.94□□□□□ -1.62
UBR3-209ENST00000477461 C8orf48Q96LL4 319 aa4.94□□□□□ -1.62
UBR3-209ENST00000477461 FYTTD1Q96QD9 318 aaKnown RBP4.94□□□□□ -1.62
UBR3-209ENST00000477461 TMEM60Q9H2L4 133 aa4.94□□□□□ -1.62
UBR3-209ENST00000477461 SMURF2Q9HAU4 748 aa4.94□□□□□ -1.62
UBR3-209ENST00000477461 MTMR4Q9NYA4 1195 aa4.94□□□□□ -1.62
UBR3-209ENST00000477461 USP22Q9UPT9 525 aa4.94□□□□□ -1.62
UBR3-209ENST00000477461 USP19O94966 1318 aa4.94□□□□□ -1.62
UBR3-209ENST00000477461 RNF17Q9BXT8 1623 aaKnown RBP4.94□□□□□ -1.62
UBR3-209ENST00000477461 CTNND1O60716 968 aaKnown RBP4.93□□□□□ -1.62
Retrieved 100 of 20,778 RNA–protein pairs in 21.5 ms