RNA–Protein interactions for RNA: ENST00000476085.1

MSH5-SAPCD1-205, Transcript of MSH5-SAPCD1 readthrough (NMD candidate), humanhuman

APPRIS ALT2 TSL 2

Gene MSH5-SAPCD1, Length 950 nt, Biotype nonsense mediated decay.

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH5-SAPCD1-205ENST00000476085 FAXDC2Q96IV6 333 aa12.95□□□□□ -0.34
MSH5-SAPCD1-205ENST00000476085 SPATA32Q96LK8 384 aa12.95□□□□□ -0.34
MSH5-SAPCD1-205ENST00000476085 TPSD1Q9BZJ3 242 aa12.95□□□□□ -0.34
MSH5-SAPCD1-205ENST00000476085 ARHGEF4Q9NR80 690 aa12.95□□□□□ -0.34
MSH5-SAPCD1-205ENST00000476085 MARK1Q9P0L2 795 aa12.95□□□□□ -0.34
MSH5-SAPCD1-205ENST00000476085 INVSQ9Y283 1065 aa12.95□□□□□ -0.34
MSH5-SAPCD1-205ENST00000476085 USP3Q9Y6I4 520 aa12.95□□□□□ -0.34
MSH5-SAPCD1-205ENST00000476085 FRYQ5TBA9 3013 aa12.94□□□□□ -0.34
MSH5-SAPCD1-205ENST00000476085 CACNA1EQ15878 2313 aa12.94□□□□□ -0.34
MSH5-SAPCD1-205ENST00000476085 TRIM24O15164 1050 aa12.94□□□□□ -0.34
MSH5-SAPCD1-205ENST00000476085 KLF8O95600 359 aaPredicted RBP12.94□□□□□ -0.34
MSH5-SAPCD1-205ENST00000476085 NR2F2P24468 414 aa12.94□□□□□ -0.34
MSH5-SAPCD1-205ENST00000476085 TIE1P35590 1138 aa12.94□□□□□ -0.34
MSH5-SAPCD1-205ENST00000476085 GCLMP48507 274 aa12.94□□□□□ -0.34
MSH5-SAPCD1-205ENST00000476085 KIF11P52732 1056 aa12.94□□□□□ -0.34
MSH5-SAPCD1-205ENST00000476085 KRT85P78386 507 aa12.94□□□□□ -0.34
MSH5-SAPCD1-205ENST00000476085 SHC2P98077 582 aa12.94□□□□□ -0.34
MSH5-SAPCD1-205ENST00000476085 CREB5Q02930 508 aa12.94□□□□□ -0.34
MSH5-SAPCD1-205ENST00000476085 MAP7D1Q3KQU3 841 aa12.94□□□□□ -0.34
MSH5-SAPCD1-205ENST00000476085 SPDYCQ5MJ68 293 aa12.94□□□□□ -0.34
MSH5-SAPCD1-205ENST00000476085 N4BP2L1Q5TBK1 243 aaPredicted RBP12.94□□□□□ -0.34
MSH5-SAPCD1-205ENST00000476085 CEP135Q66GS9 1140 aa12.94□□□□□ -0.34
MSH5-SAPCD1-205ENST00000476085 IL31Q6EBC2 164 aa12.94□□□□□ -0.34
MSH5-SAPCD1-205ENST00000476085 Q6ZNB5 142 aa12.94□□□□□ -0.34
MSH5-SAPCD1-205ENST00000476085 KRBA2Q6ZNG9 492 aa12.94□□□□□ -0.34
MSH5-SAPCD1-205ENST00000476085 CYFIP2Q96F07 1278 aa12.94□□□□□ -0.34
MSH5-SAPCD1-205ENST00000476085 P2RY11Q96G91 374 aa12.94□□□□□ -0.34
MSH5-SAPCD1-205ENST00000476085 NT5C1AQ9BXI3 368 aa12.94□□□□□ -0.34
MSH5-SAPCD1-205ENST00000476085 GOLPH3LQ9H4A5 285 aa12.94□□□□□ -0.34
MSH5-SAPCD1-205ENST00000476085 NMUR1Q9HB89 426 aa12.94□□□□□ -0.34
MSH5-SAPCD1-205ENST00000476085 TLR8Q9NR97 1041 aaKnown RBP12.94□□□□□ -0.34
MSH5-SAPCD1-205ENST00000476085 FAM49BQ9NUQ9 324 aa12.94□□□□□ -0.34
MSH5-SAPCD1-205ENST00000476085 MTPAPQ9NVV4 582 aaKnown RBP eCLIP12.94□□□□□ -0.348e-7■□□□□ 10.6
MSH5-SAPCD1-205ENST00000476085 MBD1Q9UIS9 605 aaPredicted RBP12.94□□□□□ -0.34
MSH5-SAPCD1-205ENST00000476085 FBXO10Q9UK96 956 aa12.94□□□□□ -0.34
MSH5-SAPCD1-205ENST00000476085 LNP1A1A4G5 178 aa12.93□□□□□ -0.34
MSH5-SAPCD1-205ENST00000476085 CDX4O14627 284 aaPredicted RBP12.93□□□□□ -0.34
MSH5-SAPCD1-205ENST00000476085 CACNG3O60359 315 aa12.93□□□□□ -0.34
MSH5-SAPCD1-205ENST00000476085 KIF20AO95235 890 aa12.93□□□□□ -0.34
MSH5-SAPCD1-205ENST00000476085 KCNK5O95279 499 aa12.93□□□□□ -0.34
MSH5-SAPCD1-205ENST00000476085 CISD3P0C7P0 127 aa12.93□□□□□ -0.34
MSH5-SAPCD1-205ENST00000476085 FAM200BP0CF97 657 aa12.93□□□□□ -0.34
MSH5-SAPCD1-205ENST00000476085 TRIM49P0CI25 452 aa12.93□□□□□ -0.34
MSH5-SAPCD1-205ENST00000476085 TRIM49CP0CI26 452 aa12.93□□□□□ -0.34
MSH5-SAPCD1-205ENST00000476085 GTF2H1P32780 548 aa12.93□□□□□ -0.34
MSH5-SAPCD1-205ENST00000476085 ATP5C1P36542 298 aaKnown RBP12.93□□□□□ -0.34
MSH5-SAPCD1-205ENST00000476085 PIK3CAP42336 1068 aa12.93□□□□□ -0.34
MSH5-SAPCD1-205ENST00000476085 ADAM9Q13443 819 aa12.93□□□□□ -0.34
MSH5-SAPCD1-205ENST00000476085 EOGTQ5NDL2 527 aa12.93□□□□□ -0.34
MSH5-SAPCD1-205ENST00000476085 SCD5Q86SK9 330 aa12.93□□□□□ -0.34
MSH5-SAPCD1-205ENST00000476085 MIB1Q86YT6 1006 aa12.93□□□□□ -0.34
MSH5-SAPCD1-205ENST00000476085 FRMD1Q8N878 549 aa12.93□□□□□ -0.34
MSH5-SAPCD1-205ENST00000476085 NAT16Q8N8M0 369 aa12.93□□□□□ -0.34
MSH5-SAPCD1-205ENST00000476085 TERB1Q8NA31 727 aa12.93□□□□□ -0.34
MSH5-SAPCD1-205ENST00000476085 DUSP16Q9BY84 665 aa12.93□□□□□ -0.34
MSH5-SAPCD1-205ENST00000476085 TMEM8AQ9HCN3 771 aa12.93□□□□□ -0.34
MSH5-SAPCD1-205ENST00000476085 ZDHHC4Q9NPG8 344 aa12.93□□□□□ -0.34
MSH5-SAPCD1-205ENST00000476085 DEC1Q9P2X7 70 aa12.93□□□□□ -0.34
MSH5-SAPCD1-205ENST00000476085 SH3BP1Q9Y3L3 701 aa12.93□□□□□ -0.34
MSH5-SAPCD1-205ENST00000476085 PCDHA5Q9Y5H7 936 aa12.93□□□□□ -0.34
MSH5-SAPCD1-205ENST00000476085 CFAP47Q6ZTR5 3102 aa12.93□□□□□ -0.34
MSH5-SAPCD1-205ENST00000476085 A0A1W2PQF6 199 aa12.92□□□□□ -0.34
MSH5-SAPCD1-205ENST00000476085 TBC1D3BA6NDS4 549 aa12.92□□□□□ -0.34
MSH5-SAPCD1-205ENST00000476085 CYP26A1O43174 497 aa12.92□□□□□ -0.34
MSH5-SAPCD1-205ENST00000476085 ALDH1A2O94788 518 aa12.92□□□□□ -0.34
MSH5-SAPCD1-205ENST00000476085 ZNF202O95125 648 aa12.92□□□□□ -0.34
MSH5-SAPCD1-205ENST00000476085 ADORA2BP29275 332 aa12.92□□□□□ -0.34
MSH5-SAPCD1-205ENST00000476085 GBP1P32455 592 aa12.92□□□□□ -0.34
MSH5-SAPCD1-205ENST00000476085 PSMC2P35998 433 aaKnown RBP12.92□□□□□ -0.34
MSH5-SAPCD1-205ENST00000476085 IRX4P78413 519 aa12.92□□□□□ -0.34
MSH5-SAPCD1-205ENST00000476085 KDSRQ06136 332 aa12.92□□□□□ -0.34
MSH5-SAPCD1-205ENST00000476085 EDRF1Q3B7T1 1238 aa12.92□□□□□ -0.34
MSH5-SAPCD1-205ENST00000476085 PREPLQ4J6C6 727 aaPredicted RBP12.92□□□□□ -0.34
MSH5-SAPCD1-205ENST00000476085 PPP1R26Q5T8A7 1209 aaPredicted RBP12.92□□□□□ -0.34
MSH5-SAPCD1-205ENST00000476085 PEAR1Q5VY43 1037 aaPredicted RBP12.92□□□□□ -0.34
MSH5-SAPCD1-205ENST00000476085 RNF43Q68DV7 783 aa12.92□□□□□ -0.34
MSH5-SAPCD1-205ENST00000476085 CCDC186Q7Z3E2 898 aa12.92□□□□□ -0.34
MSH5-SAPCD1-205ENST00000476085 FAM186BQ8IYM0 893 aa12.92□□□□□ -0.34
MSH5-SAPCD1-205ENST00000476085 RLN3Q8WXF3 142 aa12.92□□□□□ -0.34
MSH5-SAPCD1-205ENST00000476085 SEMA4DQ92854 862 aa12.92□□□□□ -0.34
MSH5-SAPCD1-205ENST00000476085 UBXN6Q9BZV1 441 aa12.92□□□□□ -0.34
MSH5-SAPCD1-205ENST00000476085 NIF3L1Q9GZT8 377 aa12.92□□□□□ -0.34
MSH5-SAPCD1-205ENST00000476085 SCAND2PQ9GZW5 306 aaPredicted RBP12.92□□□□□ -0.34
MSH5-SAPCD1-205ENST00000476085 FAM124BQ9H5Z6 455 aaPredicted RBP12.92□□□□□ -0.34
MSH5-SAPCD1-205ENST00000476085 POLMQ9NP87 494 aaPredicted RBP12.92□□□□□ -0.34
MSH5-SAPCD1-205ENST00000476085 EVLQ9UI08 416 aaPredicted RBP12.92□□□□□ -0.34
MSH5-SAPCD1-205ENST00000476085 MAPK8IP1Q9UQF2 711 aa12.92□□□□□ -0.34
MSH5-SAPCD1-205ENST00000476085 ASPMQ8IZT6 3477 aa12.92□□□□□ -0.34
MSH5-SAPCD1-205ENST00000476085 ZFHX4Q86UP3 3567 aa12.91□□□□□ -0.34
MSH5-SAPCD1-205ENST00000476085 A0A1W2PQH9 124 aa12.91□□□□□ -0.34
MSH5-SAPCD1-205ENST00000476085 C4orf47A7E2U8 309 aa12.91□□□□□ -0.34
MSH5-SAPCD1-205ENST00000476085 PATE3B3GLJ2 98 aa12.91□□□□□ -0.34
MSH5-SAPCD1-205ENST00000476085 PRRT4C9JH25 899 aa12.91□□□□□ -0.34
MSH5-SAPCD1-205ENST00000476085 KLKB1P03952 638 aa12.91□□□□□ -0.34
MSH5-SAPCD1-205ENST00000476085 RARGP13631 454 aa12.91□□□□□ -0.34
MSH5-SAPCD1-205ENST00000476085 GABRG2P18507 467 aa12.91□□□□□ -0.34
MSH5-SAPCD1-205ENST00000476085 ACO1P21399 889 aaKnown RBP12.91□□□□□ -0.34
MSH5-SAPCD1-205ENST00000476085 RPL13P26373 211 aaKnown RBP12.91□□□□□ -0.34
MSH5-SAPCD1-205ENST00000476085 PLA2G4AP47712 749 aa12.91□□□□□ -0.34
MSH5-SAPCD1-205ENST00000476085 PSEN1P49768 467 aa12.91□□□□□ -0.34
Retrieved 100 of 20,778 RNA–protein pairs in 23.4 ms