RNA–Protein interactions for RNA: ENST00000471834.1

SYNE1-220, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 1 (best)

Gene SYNE1, Length 7,229 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-220ENST00000471834 TAS2R40P59535 323 aa5.56□□□□□ -1.52
SYNE1-220ENST00000471834 GRIK2Q13002 908 aa5.56□□□□□ -1.52
SYNE1-220ENST00000471834 TBC1D10BQ4KMP7 808 aaPredicted RBP5.56□□□□□ -1.52
SYNE1-220ENST00000471834 INTS11Q5TA45 600 aaKnown RBP5.56□□□□□ -1.52
SYNE1-220ENST00000471834 TAS1R3Q7RTX0 852 aa5.56□□□□□ -1.52
SYNE1-220ENST00000471834 PIWIL2Q8TC59 973 aaKnown RBP5.56□□□□□ -1.52
SYNE1-220ENST00000471834 DDI1Q8WTU0 396 aa5.56□□□□□ -1.52
SYNE1-220ENST00000471834 PAFAH2Q99487 392 aa5.56□□□□□ -1.52
SYNE1-220ENST00000471834 NEURL2Q9BR09 285 aa5.56□□□□□ -1.52
SYNE1-220ENST00000471834 MED10Q9BTT4 135 aa5.56□□□□□ -1.52
SYNE1-220ENST00000471834 SLC24A3Q9HC58 644 aa5.56□□□□□ -1.52
SYNE1-220ENST00000471834 ARMC1Q9NVT9 282 aa5.56□□□□□ -1.52
SYNE1-220ENST00000471834 SUN2Q9UH99 717 aa5.56□□□□□ -1.52
SYNE1-220ENST00000471834 TTLL3Q9Y4R7 772 aa5.56□□□□□ -1.52
SYNE1-220ENST00000471834 NRCAMQ92823 1304 aa5.55□□□□□ -1.52
SYNE1-220ENST00000471834 MYH10P35580 1976 aa5.55□□□□□ -1.52
SYNE1-220ENST00000471834 ATP2A1O14983 1001 aa5.55□□□□□ -1.52
SYNE1-220ENST00000471834 TLR3O15455 904 aaKnown RBP5.55□□□□□ -1.52
SYNE1-220ENST00000471834 THRAP10827 490 aa5.55□□□□□ -1.52
SYNE1-220ENST00000471834 PLS3P13797 630 aa5.55□□□□□ -1.52
SYNE1-220ENST00000471834 OSBPP22059 807 aa5.55□□□□□ -1.52
SYNE1-220ENST00000471834 OGDHQ02218 1023 aa5.55□□□□□ -1.52
SYNE1-220ENST00000471834 POU5F1BQ06416 359 aa5.55□□□□□ -1.52
SYNE1-220ENST00000471834 TARBP2Q15633 366 aaKnown RBP5.55□□□□□ -1.52
SYNE1-220ENST00000471834 ARHGAP44Q17R89 818 aa5.55□□□□□ -1.52
SYNE1-220ENST00000471834 FAM133BQ5BKY9 247 aaKnown RBP5.55□□□□□ -1.52
SYNE1-220ENST00000471834 TMEM154Q6P9G4 183 aa5.55□□□□□ -1.52
SYNE1-220ENST00000471834 DPP8Q6V1X1 898 aaPredicted RBP5.55□□□□□ -1.52
SYNE1-220ENST00000471834 MTDHQ86UE4 582 aaKnown RBP5.55□□□□□ -1.52
SYNE1-220ENST00000471834 LONP2Q86WA8 852 aa5.55□□□□□ -1.52
SYNE1-220ENST00000471834 PPIL6Q8IXY8 311 aa5.55□□□□□ -1.52
SYNE1-220ENST00000471834 SRRM1Q8IYB3 904 aaKnown RBP5.55□□□□□ -1.52
SYNE1-220ENST00000471834 VPS52Q8N1B4 723 aa5.55□□□□□ -1.52
SYNE1-220ENST00000471834 ZC3H8Q8N5P1 291 aaKnown RBP eCLIP5.55□□□□□ -1.52
SYNE1-220ENST00000471834 TTC8Q8TAM2 541 aa5.55□□□□□ -1.52
SYNE1-220ENST00000471834 NT5C3BQ969T7 300 aa5.55□□□□□ -1.52
SYNE1-220ENST00000471834 EFHD2Q96C19 240 aaPredicted RBP5.55□□□□□ -1.52
SYNE1-220ENST00000471834 CTRCQ99895 268 aa5.55□□□□□ -1.52
SYNE1-220ENST00000471834 YIPF3Q9GZM5 350 aa5.55□□□□□ -1.52
SYNE1-220ENST00000471834 AS3MTQ9HBK9 375 aa5.55□□□□□ -1.52
SYNE1-220ENST00000471834 XPO7Q9UIA9 1087 aaKnown RBP5.55□□□□□ -1.52
SYNE1-220ENST00000471834 TMX2Q9Y320 296 aa5.55□□□□□ -1.52
SYNE1-220ENST00000471834 FADS3Q9Y5Q0 445 aa5.55□□□□□ -1.52
SYNE1-220ENST00000471834 ARFGEF1Q9Y6D6 1849 aa5.55□□□□□ -1.52
SYNE1-220ENST00000471834 RSPH10B2B2RC85 870 aa5.55□□□□□ -1.52
SYNE1-220ENST00000471834 NOL3O60936 208 aaKnown RBP5.55□□□□□ -1.52
SYNE1-220ENST00000471834 SUPT7LO94864 414 aa5.55□□□□□ -1.52
SYNE1-220ENST00000471834 RSPH10BP0C881 870 aa5.55□□□□□ -1.52
SYNE1-220ENST00000471834 SERPINB3P29508 390 aa5.55□□□□□ -1.52
SYNE1-220ENST00000471834 ATXN3P54252 364 aaPredicted RBP5.55□□□□□ -1.52
SYNE1-220ENST00000471834 TRIM71Q2Q1W2 868 aaKnown RBP5.55□□□□□ -1.52
SYNE1-220ENST00000471834 ARTNQ5T4W7 220 aa5.55□□□□□ -1.52
SYNE1-220ENST00000471834 PPP4R4Q6NUP7 873 aa5.55□□□□□ -1.52
SYNE1-220ENST00000471834 PDCD6IPQ8WUM4 868 aaKnown RBP5.55□□□□□ -1.52
SYNE1-220ENST00000471834 SLC45A3Q96JT2 553 aa5.55□□□□□ -1.52
SYNE1-220ENST00000471834 GAS2L1Q99501 681 aaPredicted RBP5.55□□□□□ -1.52
SYNE1-220ENST00000471834 NAT9Q9BTE0 207 aa5.55□□□□□ -1.52
SYNE1-220ENST00000471834 BTBD2Q9BX70 525 aa5.55□□□□□ -1.52
SYNE1-220ENST00000471834 AP5M1Q9H0R1 490 aa5.55□□□□□ -1.52
SYNE1-220ENST00000471834 C15orf38-AP3S2A0A0A6YYH1 394 aa5.55□□□□□ -1.52
SYNE1-220ENST00000471834 CAPN9O14815 690 aa5.55□□□□□ -1.52
SYNE1-220ENST00000471834 KCNA3P22001 575 aa5.55□□□□□ -1.52
SYNE1-220ENST00000471834 DCKP27707 260 aa5.55□□□□□ -1.52
SYNE1-220ENST00000471834 SNX16P57768 344 aa5.55□□□□□ -1.52
SYNE1-220ENST00000471834 SPP2Q13103 211 aa5.55□□□□□ -1.52
SYNE1-220ENST00000471834 SEMA5AQ13591 1074 aa5.55□□□□□ -1.52
SYNE1-220ENST00000471834 SUPT20HL1Q3ZLR7 823 aa5.55□□□□□ -1.52
SYNE1-220ENST00000471834 PDCD4Q53EL6 469 aaKnown RBP5.55□□□□□ -1.52
SYNE1-220ENST00000471834 KAZNQ674X7 775 aa5.55□□□□□ -1.52
SYNE1-220ENST00000471834 SPOCD1Q6ZMY3 1216 aa5.55□□□□□ -1.52
SYNE1-220ENST00000471834 TSHZ1Q6ZSZ6 1077 aa5.55□□□□□ -1.52
SYNE1-220ENST00000471834 ARPINQ7Z6K5 226 aa5.55□□□□□ -1.52
SYNE1-220ENST00000471834 PSTKQ8IV42 348 aaKnown RBP5.55□□□□□ -1.52
SYNE1-220ENST00000471834 DDX55Q8NHQ9 600 aaKnown RBP eCLIP5.55□□□□□ -1.52
SYNE1-220ENST00000471834 EIF2AK1Q9BQI3 630 aaKnown RBP5.55□□□□□ -1.52
SYNE1-220ENST00000471834 PARVAQ9NVD7 372 aa5.55□□□□□ -1.52
SYNE1-220ENST00000471834 HBS1LQ9Y450 684 aaKnown RBP5.55□□□□□ -1.52
SYNE1-220ENST00000471834 A0A1W2PPM1 405 aa5.55□□□□□ -1.52
SYNE1-220ENST00000471834 MAFGO15525 162 aa5.55□□□□□ -1.52
SYNE1-220ENST00000471834 ARFIP2P53365 341 aa5.55□□□□□ -1.52
SYNE1-220ENST00000471834 ZNF211Q13398 564 aaPredicted RBP5.55□□□□□ -1.52
SYNE1-220ENST00000471834 TGFBIQ15582 683 aa5.55□□□□□ -1.52
SYNE1-220ENST00000471834 TAF1BQ53T94 588 aaPredicted RBP5.55□□□□□ -1.52
SYNE1-220ENST00000471834 GJB7Q6PEY0 223 aa5.55□□□□□ -1.52
SYNE1-220ENST00000471834 LYSMD3Q7Z3D4 306 aa5.55□□□□□ -1.52
SYNE1-220ENST00000471834 PCGF5Q86SE9 256 aa5.55□□□□□ -1.52
SYNE1-220ENST00000471834 CROCCP3Q8IVE0 287 aa5.55□□□□□ -1.52
SYNE1-220ENST00000471834 PELI3Q8N2H9 469 aa5.55□□□□□ -1.52
SYNE1-220ENST00000471834 PPFIBP2Q8ND30 876 aa5.55□□□□□ -1.52
SYNE1-220ENST00000471834 CCDC110Q8TBZ0 833 aa5.55□□□□□ -1.52
SYNE1-220ENST00000471834 C9orf72Q96LT7 481 aa5.55□□□□□ -1.52
SYNE1-220ENST00000471834 HNRNPABQ99729 332 aaKnown RBP5.55□□□□□ -1.52
SYNE1-220ENST00000471834 PIM2Q9P1W9 311 aa5.55□□□□□ -1.52
SYNE1-220ENST00000471834 RCOR3Q9P2K3 495 aaPredicted RBP5.55□□□□□ -1.52
SYNE1-220ENST00000471834 MYH8P13535 1937 aa5.55□□□□□ -1.52
SYNE1-220ENST00000471834 A0A1B0GVG6 124 aa5.55□□□□□ -1.52
SYNE1-220ENST00000471834 TCRBV9S1A1TA0A576 114 aa5.55□□□□□ -1.52
SYNE1-220ENST00000471834 BCLAF3A2AJT9 711 aaKnown RBP5.55□□□□□ -1.52
SYNE1-220ENST00000471834 CLDN3O15551 220 aa5.55□□□□□ -1.52
SYNE1-220ENST00000471834 C4BPAP04003 597 aaKnown RBP5.55□□□□□ -1.52
Retrieved 100 of 20,778 RNA–protein pairs in 27.3 ms