RNA–Protein interactions for RNA: ENST00000468534.1

CCDC88A-210, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 3

Gene CCDC88A, Length 536 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-210ENST00000468534 FSD2A1L4K1 749 aa5.32□□□□□ -1.56
CCDC88A-210ENST00000468534 MANSC4A6NHS7 340 aaPredicted RBP5.32□□□□□ -1.56
CCDC88A-210ENST00000468534 C2orf81A6NN90 581 aa5.32□□□□□ -1.56
CCDC88A-210ENST00000468534 RASA4BC9J798 803 aa5.32□□□□□ -1.56
CCDC88A-210ENST00000468534 H7C0S8 307 aa5.32□□□□□ -1.56
CCDC88A-210ENST00000468534 K7ESF4 209 aa5.32□□□□□ -1.56
CCDC88A-210ENST00000468534 TPP1O14773 563 aa5.32□□□□□ -1.56
CCDC88A-210ENST00000468534 MPPED1O15442 326 aa5.32□□□□□ -1.56
CCDC88A-210ENST00000468534 APBB3O95704 486 aa5.32□□□□□ -1.56
CCDC88A-210ENST00000468534 TBX18O95935 607 aa5.32□□□□□ -1.56
CCDC88A-210ENST00000468534 MYBL2P10244 700 aa5.32□□□□□ -1.56
CCDC88A-210ENST00000468534 KRT13P13646 458 aa5.32□□□□□ -1.56
CCDC88A-210ENST00000468534 CCND1P24385 295 aa5.32□□□□□ -1.56
CCDC88A-210ENST00000468534 KRT9P35527 623 aa5.32□□□□□ -1.56
CCDC88A-210ENST00000468534 GRIA3P42263 894 aa5.32□□□□□ -1.56
CCDC88A-210ENST00000468534 CLNS1AP54105 237 aaKnown RBP5.32□□□□□ -1.56
CCDC88A-210ENST00000468534 RPS7P62081 194 aaKnown RBP5.32□□□□□ -1.56
CCDC88A-210ENST00000468534 MC2RQ01718 297 aa5.32□□□□□ -1.56
CCDC88A-210ENST00000468534 MECOMQ03112 1051 aa5.32□□□□□ -1.56
CCDC88A-210ENST00000468534 TNFAIP2Q03169 654 aa5.32□□□□□ -1.56
CCDC88A-210ENST00000468534 ZNF844Q08AG5 666 aa5.32□□□□□ -1.56
CCDC88A-210ENST00000468534 CCDC15Q0P6D6 951 aa5.32□□□□□ -1.56
CCDC88A-210ENST00000468534 SHROOM1Q2M3G4 852 aaPredicted RBP5.32□□□□□ -1.56
CCDC88A-210ENST00000468534 INAVAQ3KP66 663 aa5.32□□□□□ -1.56
CCDC88A-210ENST00000468534 KIAA0895LQ68EN5 471 aa5.32□□□□□ -1.56
CCDC88A-210ENST00000468534 CNSTQ6PJW8 725 aa5.32□□□□□ -1.56
CCDC88A-210ENST00000468534 FIP1L1Q6UN15 594 aaKnown RBP5.32□□□□□ -1.56
CCDC88A-210ENST00000468534 MFSD6Q6ZSS7 791 aa5.32□□□□□ -1.56
CCDC88A-210ENST00000468534 CCDC149Q6ZUS6 474 aa5.32□□□□□ -1.56
CCDC88A-210ENST00000468534 VSIG1Q86XK7 387 aa5.32□□□□□ -1.56
CCDC88A-210ENST00000468534 PCYOX1LQ8NBM8 494 aa5.32□□□□□ -1.56
CCDC88A-210ENST00000468534 NEK9Q8TD19 979 aa5.32□□□□□ -1.56
CCDC88A-210ENST00000468534 SMG7Q92540 1137 aaKnown RBP5.32□□□□□ -1.56
CCDC88A-210ENST00000468534 ZNF75CPQ92670 426 aaPredicted RBP5.32□□□□□ -1.56
CCDC88A-210ENST00000468534 TEKT1Q969V4 418 aa5.32□□□□□ -1.56
CCDC88A-210ENST00000468534 ZNF396Q96N95 335 aaPredicted RBP5.32□□□□□ -1.56
CCDC88A-210ENST00000468534 NUP88Q99567 741 aaPredicted RBP5.32□□□□□ -1.56
CCDC88A-210ENST00000468534 DESI2Q9BSY9 194 aa5.32□□□□□ -1.56
CCDC88A-210ENST00000468534 PACSIN1Q9BY11 444 aa5.32□□□□□ -1.56
CCDC88A-210ENST00000468534 RWDD1Q9H446 243 aaPredicted RBP5.32□□□□□ -1.56
CCDC88A-210ENST00000468534 STARD7Q9NQZ5 370 aa5.32□□□□□ -1.56
CCDC88A-210ENST00000468534 ZNF277Q9NRM2 450 aaPredicted RBP5.32□□□□□ -1.56
CCDC88A-210ENST00000468534 PLSCR4Q9NRQ2 329 aa5.32□□□□□ -1.56
CCDC88A-210ENST00000468534 IFT80Q9P2H3 777 aaPredicted RBP5.32□□□□□ -1.56
CCDC88A-210ENST00000468534 ST3GAL5Q9UNP4 418 aa5.32□□□□□ -1.56
CCDC88A-210ENST00000468534 KNSTRNQ9Y448 316 aa5.32□□□□□ -1.56
CCDC88A-210ENST00000468534 MTF2Q9Y483 593 aaPredicted RBP5.32□□□□□ -1.56
CCDC88A-210ENST00000468534 SQORQ9Y6N5 450 aa5.32□□□□□ -1.56
CCDC88A-210ENST00000468534 ZCCHC6Q5VYS8 1495 aaKnown RBP5.32□□□□□ -1.56
CCDC88A-210ENST00000468534 KAT6AQ92794 2004 aa5.31□□□□□ -1.56
CCDC88A-210ENST00000468534 SOS1Q07889 1333 aaPredicted RBP5.31□□□□□ -1.56
CCDC88A-210ENST00000468534 CCDC151A5D8V7 595 aa5.31□□□□□ -1.56
CCDC88A-210ENST00000468534 B4DLN1 442 aa5.31□□□□□ -1.56
CCDC88A-210ENST00000468534 ADM5C9JUS6 153 aa5.31□□□□□ -1.56
CCDC88A-210ENST00000468534 IPO7O95373 1038 aaKnown RBP5.31□□□□□ -1.56
CCDC88A-210ENST00000468534 ZBED1O96006 694 aa5.31□□□□□ -1.56
CCDC88A-210ENST00000468534 MT-ND3P03897 115 aa5.31□□□□□ -1.56
CCDC88A-210ENST00000468534 PARP1P09874 1014 aaKnown RBP5.31□□□□□ -1.56
CCDC88A-210ENST00000468534 ELFN1P0C7U0 828 aa5.31□□□□□ -1.56
CCDC88A-210ENST00000468534 CCNCP24863 283 aa5.31□□□□□ -1.56
CCDC88A-210ENST00000468534 IARSP41252 1262 aaKnown RBP5.31□□□□□ -1.56
CCDC88A-210ENST00000468534 TNNT3P45378 269 aaPredicted RBP5.31□□□□□ -1.56
CCDC88A-210ENST00000468534 EVCP57679 992 aa5.31□□□□□ -1.56
CCDC88A-210ENST00000468534 SPARCL1Q14515 664 aa5.31□□□□□ -1.56
CCDC88A-210ENST00000468534 ACAP2Q15057 778 aa5.31□□□□□ -1.56
CCDC88A-210ENST00000468534 PABPC1LQ4VXU2 614 aaKnown RBP5.31□□□□□ -1.56
CCDC88A-210ENST00000468534 FAM205BPQ63HN1 556 aa5.31□□□□□ -1.56
CCDC88A-210ENST00000468534 CRTC1Q6UUV9 634 aa5.31□□□□□ -1.56
CCDC88A-210ENST00000468534 DSTYKQ6XUX3 929 aa5.31□□□□□ -1.56
CCDC88A-210ENST00000468534 SRGAP1Q7Z6B7 1085 aa5.31□□□□□ -1.56
CCDC88A-210ENST00000468534 EPHX4Q8IUS5 362 aa5.31□□□□□ -1.56
CCDC88A-210ENST00000468534 RNF168Q8IYW5 571 aaPredicted RBP5.31□□□□□ -1.56
CCDC88A-210ENST00000468534 MYCBPAPQ8TBZ2 947 aa5.31□□□□□ -1.56
CCDC88A-210ENST00000468534 HSPBAP1Q96EW2 488 aa5.31□□□□□ -1.56
CCDC88A-210ENST00000468534 KLHL32Q96NJ5 620 aa5.31□□□□□ -1.56
CCDC88A-210ENST00000468534 LZTS2Q9BRK4 669 aa5.31□□□□□ -1.56
CCDC88A-210ENST00000468534 IMPG2Q9BZV3 1241 aa5.31□□□□□ -1.56
CCDC88A-210ENST00000468534 ZWILCHQ9H900 591 aa5.31□□□□□ -1.56
CCDC88A-210ENST00000468534 ARFGAP3Q9NP61 516 aa5.31□□□□□ -1.56
CCDC88A-210ENST00000468534 UBN1Q9NPG3 1134 aa5.31□□□□□ -1.56
CCDC88A-210ENST00000468534 NMRK2Q9NPI5 230 aa5.31□□□□□ -1.56
CCDC88A-210ENST00000468534 CAMSAP3Q9P1Y5 1249 aaPredicted RBP5.31□□□□□ -1.56
CCDC88A-210ENST00000468534 CTTNBP2NLQ9P2B4 639 aa5.31□□□□□ -1.56
CCDC88A-210ENST00000468534 CFAP45Q9UL16 551 aa5.31□□□□□ -1.56
CCDC88A-210ENST00000468534 SLC45A2Q9UMX9 530 aa5.31□□□□□ -1.56
CCDC88A-210ENST00000468534 ENTPD2Q9Y5L3 495 aa5.31□□□□□ -1.56
CCDC88A-210ENST00000468534 CGB1A6NKQ9 187 aa5.3□□□□□ -1.56
CCDC88A-210ENST00000468534 LINC00473A8K010 186 aa5.3□□□□□ -1.56
CCDC88A-210ENST00000468534 VGLL3A8MV65 326 aa5.3□□□□□ -1.56
CCDC88A-210ENST00000468534 HOXC11O43248 304 aaPredicted RBP5.3□□□□□ -1.56
CCDC88A-210ENST00000468534 HSPA4LO95757 839 aa5.3□□□□□ -1.56
CCDC88A-210ENST00000468534 HRGP04196 525 aa5.3□□□□□ -1.56
CCDC88A-210ENST00000468534 CD1AP06126 327 aa5.3□□□□□ -1.56
CCDC88A-210ENST00000468534 PPP3CBP16298 524 aa5.3□□□□□ -1.56
CCDC88A-210ENST00000468534 HSPA6P17066 643 aa5.3□□□□□ -1.56
CCDC88A-210ENST00000468534 PHKA1P46020 1223 aa5.3□□□□□ -1.56
CCDC88A-210ENST00000468534 NPTX2P47972 431 aa5.3□□□□□ -1.56
CCDC88A-210ENST00000468534 ZNF81P51508 661 aa5.3□□□□□ -1.56
CCDC88A-210ENST00000468534 DCAF7P61962 342 aa5.3□□□□□ -1.56
CCDC88A-210ENST00000468534 KLF1Q13351 362 aaPredicted RBP5.3□□□□□ -1.56
Retrieved 100 of 20,778 RNA–protein pairs in 40.8 ms