RNA–Protein interactions for RNA: ENST00000467885.6

USP39-213, Transcript of ubiquitin specific peptidase 39, humanhuman

TSL 5

Gene USP39, Length 338 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP39-213ENST00000467885 MOCS3O95396 460 aa6.24□□□□□ -1.41
USP39-213ENST00000467885 TFE3P19532 575 aaPredicted RBP6.24□□□□□ -1.41
USP39-213ENST00000467885 YWHAQP27348 245 aa6.24□□□□□ -1.41
USP39-213ENST00000467885 FLT3P36888 993 aa6.24□□□□□ -1.41
USP39-213ENST00000467885 NOP2P46087 812 aaKnown RBP6.24□□□□□ -1.41
USP39-213ENST00000467885 ALDH1A3P47895 512 aa6.24□□□□□ -1.41
USP39-213ENST00000467885 PEX5P50542 639 aa6.24□□□□□ -1.41
USP39-213ENST00000467885 SLC5A3P53794 718 aa6.24□□□□□ -1.41
USP39-213ENST00000467885 RNASE9P60153 205 aaKnown RBP6.24□□□□□ -1.41
USP39-213ENST00000467885 PRR20EP86478 221 aa6.24□□□□□ -1.41
USP39-213ENST00000467885 PRR20CP86479 221 aa6.24□□□□□ -1.41
USP39-213ENST00000467885 PRR20DP86480 221 aa6.24□□□□□ -1.41
USP39-213ENST00000467885 PRR20BP86481 221 aa6.24□□□□□ -1.41
USP39-213ENST00000467885 PRR20AP86496 221 aa6.24□□□□□ -1.41
USP39-213ENST00000467885 ZNF252P-AS1Q0IIN9 211 aa6.24□□□□□ -1.41
USP39-213ENST00000467885 ADIGQ0VDE8 80 aa6.24□□□□□ -1.41
USP39-213ENST00000467885 TWF1Q12792 350 aa6.24□□□□□ -1.41
USP39-213ENST00000467885 HYAL1Q12794 435 aa6.24□□□□□ -1.41
USP39-213ENST00000467885 TAF10Q12962 218 aa6.24□□□□□ -1.41
USP39-213ENST00000467885 CTC1Q2NKJ3 1217 aa6.24□□□□□ -1.41
USP39-213ENST00000467885 RAB6CQ53S08 254 aa6.24□□□□□ -1.41
USP39-213ENST00000467885 DENND5BQ6ZUT9 1274 aa6.24□□□□□ -1.41
USP39-213ENST00000467885 CPNE8Q86YQ8 564 aa6.24□□□□□ -1.41
USP39-213ENST00000467885 RHOT2Q8IXI1 618 aa6.24□□□□□ -1.41
USP39-213ENST00000467885 DEFB106AQ8N104 65 aa6.24□□□□□ -1.41
USP39-213ENST00000467885 EMC1Q8N766 993 aa6.24□□□□□ -1.41
USP39-213ENST00000467885 RXFP2Q8WXD0 754 aa6.24□□□□□ -1.41
USP39-213ENST00000467885 RFFLQ8WZ73 363 aa6.24□□□□□ -1.41
USP39-213ENST00000467885 PSMG2Q969U7 264 aa6.24□□□□□ -1.41
USP39-213ENST00000467885 ZNF707Q96C28 371 aaPredicted RBP6.24□□□□□ -1.41
USP39-213ENST00000467885 TRIM11Q96F44 468 aa6.24□□□□□ -1.41
USP39-213ENST00000467885 BTBD6Q96KE9 485 aa6.24□□□□□ -1.41
USP39-213ENST00000467885 CALR3Q96L12 384 aaKnown RBP6.24□□□□□ -1.41
USP39-213ENST00000467885 SLC2A13Q96QE2 648 aa6.24□□□□□ -1.41
USP39-213ENST00000467885 NPY6RQ99463 290 aa6.24□□□□□ -1.41
USP39-213ENST00000467885 NUP85Q9BW27 656 aa6.24□□□□□ -1.41
USP39-213ENST00000467885 RNF38Q9H0F5 515 aa6.24□□□□□ -1.41
USP39-213ENST00000467885 RAB6CQ9H0N0 254 aa6.24□□□□□ -1.41
USP39-213ENST00000467885 PRDM12Q9H4Q4 367 aa6.24□□□□□ -1.41
USP39-213ENST00000467885 ZNF334Q9HCZ1 680 aaPredicted RBP6.24□□□□□ -1.41
USP39-213ENST00000467885 MRPL47Q9HD33 250 aaKnown RBP6.24□□□□□ -1.41
USP39-213ENST00000467885 LUC7LQ9NQ29 371 aaKnown RBP6.24□□□□□ -1.41
USP39-213ENST00000467885 ASNSD1Q9NWL6 643 aa6.24□□□□□ -1.41
USP39-213ENST00000467885 CALCOCO1Q9P1Z2 691 aa6.24□□□□□ -1.41
USP39-213ENST00000467885 CTTNBP2NLQ9P2B4 639 aa6.24□□□□□ -1.41
USP39-213ENST00000467885 CHD7Q9P2D1 2997 aa6.24□□□□□ -1.41
USP39-213ENST00000467885 DNMT3BQ9UBC3 853 aaKnown RBP6.24□□□□□ -1.41
USP39-213ENST00000467885 FBXW11Q9UKB1 542 aa6.24□□□□□ -1.41
USP39-213ENST00000467885 STRIP2Q9ULQ0 834 aa6.24□□□□□ -1.41
USP39-213ENST00000467885 ASB3Q9Y575 518 aa6.24□□□□□ -1.41
USP39-213ENST00000467885 INSL5Q9Y5Q6 135 aa6.24□□□□□ -1.41
USP39-213ENST00000467885 HCFC2Q9Y5Z7 792 aa6.24□□□□□ -1.41
USP39-213ENST00000467885 MTCH2Q9Y6C9 303 aa6.24□□□□□ -1.41
USP39-213ENST00000467885 RALGAPA2Q2PPJ7 1873 aa6.24□□□□□ -1.41
USP39-213ENST00000467885 NCANO14594 1321 aa6.24□□□□□ -1.41
USP39-213ENST00000467885 TDRD15B5MCY1 1934 aaKnown RBP6.23□□□□□ -1.41
USP39-213ENST00000467885 TMEM265A0A087WTH1 108 aa6.23□□□□□ -1.41
USP39-213ENST00000467885 CCDC195A0A1B0GUA6 201 aa6.23□□□□□ -1.41
USP39-213ENST00000467885 A0A1W2PQH9 124 aa6.23□□□□□ -1.41
USP39-213ENST00000467885 MACROD2A1Z1Q3 448 aa6.23□□□□□ -1.41
USP39-213ENST00000467885 GRID2IPA4D2P6 1211 aa6.23□□□□□ -1.41
USP39-213ENST00000467885 PRRG1O14668 218 aa6.23□□□□□ -1.41
USP39-213ENST00000467885 LINC01565O15544 149 aa6.23□□□□□ -1.41
USP39-213ENST00000467885 MOSPD3O75425 235 aa6.23□□□□□ -1.41
USP39-213ENST00000467885 PALMO75781 387 aa6.23□□□□□ -1.41
USP39-213ENST00000467885 PROSCO94903 275 aa6.23□□□□□ -1.41
USP39-213ENST00000467885 RTN3O95197 1032 aaPredicted RBP6.23□□□□□ -1.41
USP39-213ENST00000467885 TBX18O95935 607 aa6.23□□□□□ -1.41
USP39-213ENST00000467885 GLUD1P00367 558 aa6.23□□□□□ -1.41
USP39-213ENST00000467885 C8AP07357 584 aa6.23□□□□□ -1.41
USP39-213ENST00000467885 HNRNPA1P09651 372 aaKnown RBP eCLIP6.23□□□□□ -1.41
USP39-213ENST00000467885 CSH1P0DML2 217 aa6.23□□□□□ -1.41
USP39-213ENST00000467885 CSH2P0DML3 217 aa6.23□□□□□ -1.41
USP39-213ENST00000467885 PDGFRAP16234 1089 aa6.23□□□□□ -1.41
USP39-213ENST00000467885 PTPN2P17706 415 aa6.23□□□□□ -1.41
USP39-213ENST00000467885 NOS2P35228 1153 aa6.23□□□□□ -1.41
USP39-213ENST00000467885 LTBRP36941 435 aa6.23□□□□□ -1.41
USP39-213ENST00000467885 MATKP42679 507 aa6.23□□□□□ -1.41
USP39-213ENST00000467885 NRIP1P48552 1158 aa6.23□□□□□ -1.41
USP39-213ENST00000467885 ZNF143P52747 638 aaPredicted RBP6.23□□□□□ -1.41
USP39-213ENST00000467885 EPHB3P54753 998 aa6.23□□□□□ -1.41
USP39-213ENST00000467885 EPHA5P54756 1037 aa6.23□□□□□ -1.41
USP39-213ENST00000467885 YWHAGP61981 247 aaKnown RBP eCLIP6.23□□□□□ -1.41
USP39-213ENST00000467885 ETF1P62495 437 aaKnown RBP6.23□□□□□ -1.41
USP39-213ENST00000467885 PITX1P78337 314 aaPredicted RBP6.23□□□□□ -1.41
USP39-213ENST00000467885 PIGHQ14442 188 aaPredicted RBP6.23□□□□□ -1.41
USP39-213ENST00000467885 MESDQ14696 234 aa6.23□□□□□ -1.41
USP39-213ENST00000467885 COL19A1Q14993 1142 aa6.23□□□□□ -1.41
USP39-213ENST00000467885 ACAP1Q15027 740 aa6.23□□□□□ -1.41
USP39-213ENST00000467885 SLC25A52Q3SY17 297 aa6.23□□□□□ -1.41
USP39-213ENST00000467885 ATP13A4Q4VNC1 1196 aa6.23□□□□□ -1.41
USP39-213ENST00000467885 TCEAL5Q5H9L2 206 aa6.23□□□□□ -1.41
USP39-213ENST00000467885 ZNF569Q5MCW4 686 aa6.23□□□□□ -1.41
USP39-213ENST00000467885 ARTNQ5T4W7 220 aa6.23□□□□□ -1.41
USP39-213ENST00000467885 PRPF38BQ5VTL8 546 aaKnown RBP6.23□□□□□ -1.41
USP39-213ENST00000467885 CC2D1AQ6P1N0 951 aaPredicted RBP6.23□□□□□ -1.41
USP39-213ENST00000467885 CCDC149Q6ZUS6 474 aa6.23□□□□□ -1.41
USP39-213ENST00000467885 GAREM2Q75VX8 874 aa6.23□□□□□ -1.41
USP39-213ENST00000467885 NT5DC3Q86UY8 548 aa6.23□□□□□ -1.41
USP39-213ENST00000467885 C12orf76Q8N812 135 aaPredicted RBP6.23□□□□□ -1.41
Retrieved 100 of 20,778 RNA–protein pairs in 29.8 ms