RNA–Protein interactions for RNA: ENST00000467464.1

PTPRF-211, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 3

Gene PTPRF, Length 571 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-211ENST00000467464 ARHGEF4Q9NR80 690 aa12.62□□□□□ -0.39
PTPRF-211ENST00000467464 TLR8Q9NR97 1041 aaKnown RBP12.62□□□□□ -0.39
PTPRF-211ENST00000467464 SGK1O00141 431 aa12.61□□□□□ -0.39
PTPRF-211ENST00000467464 TULP2O00295 520 aa12.61□□□□□ -0.39
PTPRF-211ENST00000467464 SLC30A4O14863 429 aa12.61□□□□□ -0.39
PTPRF-211ENST00000467464 STX10O60499 249 aa12.61□□□□□ -0.39
PTPRF-211ENST00000467464 TULP3O75386 442 aa12.61□□□□□ -0.39
PTPRF-211ENST00000467464 CCDC192P0DO97 292 aa12.61□□□□□ -0.39
PTPRF-211ENST00000467464 IRF1P10914 325 aa12.61□□□□□ -0.39
PTPRF-211ENST00000467464 GRIA2P42262 883 aa12.61□□□□□ -0.39
PTPRF-211ENST00000467464 FKBP3Q00688 224 aaKnown RBP12.61□□□□□ -0.39
PTPRF-211ENST00000467464 GAD2Q05329 585 aa12.61□□□□□ -0.39
PTPRF-211ENST00000467464 LRRC63Q05C16 580 aa12.61□□□□□ -0.39
PTPRF-211ENST00000467464 BECN1Q14457 450 aa12.61□□□□□ -0.39
PTPRF-211ENST00000467464 CCDC6Q16204 474 aa12.61□□□□□ -0.39
PTPRF-211ENST00000467464 ARHGAP17Q68EM7 881 aa12.61□□□□□ -0.39
PTPRF-211ENST00000467464 ELOA2Q8IYF1 753 aaPredicted RBP12.61□□□□□ -0.39
PTPRF-211ENST00000467464 ALLCQ8N6M5 410 aa12.61□□□□□ -0.39
PTPRF-211ENST00000467464 MDGA1Q8NFP4 955 aa12.61□□□□□ -0.39
PTPRF-211ENST00000467464 CCDC26Q8TAB7 109 aa12.61□□□□□ -0.39
PTPRF-211ENST00000467464 OLIG1Q8TAK6 271 aa12.61□□□□□ -0.39
PTPRF-211ENST00000467464 SMARCE1Q969G3 411 aa12.61□□□□□ -0.39
PTPRF-211ENST00000467464 CCDC34Q96HJ3 373 aa12.61□□□□□ -0.39
PTPRF-211ENST00000467464 TMEM176AQ96HP8 235 aa12.61□□□□□ -0.39
PTPRF-211ENST00000467464 CNOT6LQ96LI5 555 aaKnown RBP12.61□□□□□ -0.39
PTPRF-211ENST00000467464 ARRDC1-AS1Q9H2J1 176 aa12.61□□□□□ -0.39
PTPRF-211ENST00000467464 FAM124BQ9H5Z6 455 aaPredicted RBP12.61□□□□□ -0.39
PTPRF-211ENST00000467464 ZDHHC4Q9NPG8 344 aa12.61□□□□□ -0.39
PTPRF-211ENST00000467464 RXFP3Q9NSD7 469 aa12.61□□□□□ -0.39
PTPRF-211ENST00000467464 MARK1Q9P0L2 795 aa12.61□□□□□ -0.39
PTPRF-211ENST00000467464 NUDT5Q9UKK9 219 aa12.61□□□□□ -0.39
PTPRF-211ENST00000467464 MAN1B1Q9UKM7 699 aa12.61□□□□□ -0.39
PTPRF-211ENST00000467464 SH3BP1Q9Y3L3 701 aa12.61□□□□□ -0.39
PTPRF-211ENST00000467464 CEP250Q9BV73 2442 aa12.61□□□□□ -0.39
PTPRF-211ENST00000467464 CACNG3O60359 315 aa12.6□□□□□ -0.39
PTPRF-211ENST00000467464 SMC2O95347 1197 aa12.6□□□□□ -0.39
PTPRF-211ENST00000467464 KLF8O95600 359 aaPredicted RBP12.6□□□□□ -0.39
PTPRF-211ENST00000467464 KLKB1P03952 638 aa12.6□□□□□ -0.39
PTPRF-211ENST00000467464 APODP05090 189 aa12.6□□□□□ -0.39
PTPRF-211ENST00000467464 ZNF806P0C7X5 589 aa12.6□□□□□ -0.39
PTPRF-211ENST00000467464 RARGP13631 454 aa12.6□□□□□ -0.39
PTPRF-211ENST00000467464 ATP5C1P36542 298 aaKnown RBP12.6□□□□□ -0.39
PTPRF-211ENST00000467464 TNFRSF4P43489 277 aa12.6□□□□□ -0.39
PTPRF-211ENST00000467464 CUL2Q13617 745 aa12.6□□□□□ -0.39
PTPRF-211ENST00000467464 SF3A2Q15428 464 aaKnown RBP12.6□□□□□ -0.39
PTPRF-211ENST00000467464 HSF5Q4G112 596 aaPredicted RBP12.6□□□□□ -0.39
PTPRF-211ENST00000467464 DCAF17Q5H9S7 520 aaPredicted RBP12.6□□□□□ -0.39
PTPRF-211ENST00000467464 TTI2Q6NXR4 508 aa12.6□□□□□ -0.39
PTPRF-211ENST00000467464 MIB1Q86YT6 1006 aa12.6□□□□□ -0.39
PTPRF-211ENST00000467464 NAT16Q8N8M0 369 aa12.6□□□□□ -0.39
PTPRF-211ENST00000467464 TERB1Q8NA31 727 aa12.6□□□□□ -0.39
PTPRF-211ENST00000467464 TXNDC5Q8NBS9 432 aaKnown RBP12.6□□□□□ -0.39
PTPRF-211ENST00000467464 CCDC150Q8NCX0 1101 aa12.6□□□□□ -0.39
PTPRF-211ENST00000467464 TSTD1Q8NFU3 115 aa12.6□□□□□ -0.39
PTPRF-211ENST00000467464 NETO1Q8TDF5 533 aa12.6□□□□□ -0.39
PTPRF-211ENST00000467464 HEXIM2Q96MH2 286 aaKnown RBP12.6□□□□□ -0.39
PTPRF-211ENST00000467464 TSG101Q99816 390 aa12.6□□□□□ -0.39
PTPRF-211ENST00000467464 RTKNQ9BST9 563 aa12.6□□□□□ -0.39
PTPRF-211ENST00000467464 TPSD1Q9BZJ3 242 aa12.6□□□□□ -0.39
PTPRF-211ENST00000467464 UBXN6Q9BZV1 441 aa12.6□□□□□ -0.39
PTPRF-211ENST00000467464 SMOC1Q9H4F8 434 aa12.6□□□□□ -0.39
PTPRF-211ENST00000467464 CD248Q9HCU0 757 aa12.6□□□□□ -0.39
PTPRF-211ENST00000467464 CDV3Q9UKY7 258 aaKnown RBP12.6□□□□□ -0.39
PTPRF-211ENST00000467464 PCDHGA5Q9Y5G8 931 aa12.6□□□□□ -0.39
PTPRF-211ENST00000467464 ZNF638Q14966 1978 aaKnown RBP12.6□□□□□ -0.39
PTPRF-211ENST00000467464 MYO16Q9Y6X6 1858 aa12.59□□□□□ -0.39
PTPRF-211ENST00000467464 LOC105378220A0A1B0GUY1 285 aaPredicted RBP12.59□□□□□ -0.39
PTPRF-211ENST00000467464 DCDC2BA2VCK2 349 aa12.59□□□□□ -0.39
PTPRF-211ENST00000467464 GOLGA6L4A6NEF3 574 aa12.59□□□□□ -0.39
PTPRF-211ENST00000467464 PALM2-AKAP2B1ALY0 433 aaPredicted RBP12.59□□□□□ -0.39
PTPRF-211ENST00000467464 PPP1R3GB7ZBB8 358 aa12.59□□□□□ -0.39
PTPRF-211ENST00000467464 GADD45BO75293 160 aaPredicted RBP12.59□□□□□ -0.39
PTPRF-211ENST00000467464 STC2O76061 302 aa12.59□□□□□ -0.39
PTPRF-211ENST00000467464 SDHBP21912 280 aa12.59□□□□□ -0.39
PTPRF-211ENST00000467464 BCKDHBP21953 392 aa12.59□□□□□ -0.39
PTPRF-211ENST00000467464 TIE1P35590 1138 aa12.59□□□□□ -0.39
PTPRF-211ENST00000467464 MPLP40238 635 aa12.59□□□□□ -0.39
PTPRF-211ENST00000467464 DGKEP52429 567 aa12.59□□□□□ -0.39
PTPRF-211ENST00000467464 PKDCCQ504Y2 493 aa12.59□□□□□ -0.39
PTPRF-211ENST00000467464 TCERG1LQ5VWI1 586 aa12.59□□□□□ -0.39
PTPRF-211ENST00000467464 PMS2CLQ68D20 193 aa12.59□□□□□ -0.39
PTPRF-211ENST00000467464 ANO7Q6IWH7 933 aa12.59□□□□□ -0.39
PTPRF-211ENST00000467464 PIGZQ86VD9 579 aa12.59□□□□□ -0.39
PTPRF-211ENST00000467464 TTC39CQ8N584 583 aa12.59□□□□□ -0.39
PTPRF-211ENST00000467464 ANKRD52Q8NB46 1076 aa12.59□□□□□ -0.39
PTPRF-211ENST00000467464 LMO3Q8TAP4 145 aa12.59□□□□□ -0.39
PTPRF-211ENST00000467464 NACA2Q9H009 215 aa12.59□□□□□ -0.39
PTPRF-211ENST00000467464 CLIC5Q9NZA1 410 aa12.59□□□□□ -0.39
PTPRF-211ENST00000467464 ARMCX3Q9UH62 379 aaPredicted RBP12.59□□□□□ -0.39
PTPRF-211ENST00000467464 DNMT3LQ9UJW3 386 aa12.59□□□□□ -0.39
PTPRF-211ENST00000467464 NAGPAQ9UK23 515 aa12.59□□□□□ -0.39
PTPRF-211ENST00000467464 INVSQ9Y283 1065 aa12.59□□□□□ -0.39
PTPRF-211ENST00000467464 TM4SF5O14894 197 aa12.58□□□□□ -0.4
PTPRF-211ENST00000467464 PMM2O15305 246 aa12.58□□□□□ -0.4
PTPRF-211ENST00000467464 TRIM21P19474 475 aaKnown RBP12.58□□□□□ -0.4
PTPRF-211ENST00000467464 PSEN1P49768 467 aa12.58□□□□□ -0.4
PTPRF-211ENST00000467464 LIMK1P53667 647 aa12.58□□□□□ -0.4
PTPRF-211ENST00000467464 MORC3Q14149 939 aa12.58□□□□□ -0.4
PTPRF-211ENST00000467464 C10orf120Q5SQS8 335 aa12.58□□□□□ -0.4
PTPRF-211ENST00000467464 PM20D1Q6GTS8 502 aa12.58□□□□□ -0.4
Retrieved 100 of 20,778 RNA–protein pairs in 46.4 ms